F183985

General Info

Members Datasets Scaffolds Average Seq Length
141 103 282 227

Family's Representative Sequence

Representative Sequence 3300050489|nmdc:mga03683_7006_c1|nmdc:mga03683_7006_c1_1700_2485
Length 261
Sequence LLDGDANITSVKALPRLPPSGGIAHDRVVRLLLVEDDATIADFVEGGLREAGFAVERAADGRSGLELAAAGPFDAAIVDVMLPHMDGLALIDALRAKGIRTPVLILSAKRTVDDRVRGLQRGGDDYLTKPFDFAELLARVQALIRRATGASEPTRLVAGDLTLDLLTRKVQRGAQPIDLRPREFALLEYLMRNAGRVVSKTSILSHVWGYNFDPNTNVVDVLVSRLRDRIDKPFPAKLLHTVRGVGYVLRPLDEARGGPPA

Samples

Sample ID Description Type Environment
1 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
18 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
19 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
20 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
21 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
22 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
23 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
24 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
34 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
35 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
36 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
49 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
50 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
51 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
52 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
53 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
54 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
55 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
56 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
57 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
58 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
59 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
60 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
61 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
62 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
63 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
64 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
65 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
66 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
67 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
68 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
69 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
70 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
71 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
74 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
78 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
79 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
80 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
81 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
82 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
83 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
84 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
85 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
86 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
87 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
92 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
93 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
94 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
95 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
96 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
97 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
98 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
99 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
100 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
101 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
102 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
103 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.4
Nodule 0
Rhizoplane 0
Rhizosphere 74.47
Stem 0
Stem Tuber 0
Unclassified 2.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga03683_7006_c1 3300050489 Bacteria 3889
2 JGI24735J21928_10009629 3300002067 Bacteria 3097
3 Ga0065712_10078151 3300005290 Bacteria 3386
4 Ga0065712_10097475 3300005290 Bacteria 2146
5 Ga0065715_10242935 3300005293 Bacteria 1193
6 Ga0065715_10273933 3300005293 Bacteria 1103
7 Ga0070670_100004084 3300005331 Bacteria 12192
8 Ga0070669_100231870 3300005353 Bacteria 1464
9 Ga0070675_100303902 3300005354 Bacteria 1406
10 Ga0070675_100933778 3300005354 Bacteria 796
11 Ga0070674_100057188 3300005356 Bacteria 2707
12 Ga0070706_100242669 3300005467 Bacteria 1682
13 Ga0070699_100133624 3300005518 Bacteria 2188
14 Ga0070696_100193703 3300005546 Bacteria 1514
15 Ga0068855_100004313 3300005563 Bacteria 17388
16 Ga0068855_100342145 3300005563 Bacteria 1649
17 Ga0070664_100687962 3300005564 Bacteria 952
18 Ga0068856_100731216 3300005614 Bacteria 1010
19 Ga0068852_100199027 3300005616 Bacteria 1895
20 Ga0068864_100535947 3300005618 Bacteria 1130
21 Ga0075365_10048528 3300006038 Bacteria 2795
22 Ga0075368_10007398 3300006042 Bacteria 3874
23 Ga0075368_10029203 3300006042 Bacteria 2132
24 Ga0075364_10001527 3300006051 Bacteria 12608
25 Ga0075364_10026748 3300006051 Bacteria 3683
26 Ga0075364_10193444 3300006051 Bacteria 1378
27 Ga0075362_10008476 3300006177 Bacteria 3933
28 Ga0075367_10008143 3300006178 Bacteria 5414
29 Ga0075367_10029216 3300006178 Bacteria 3151
30 Ga0075367_10049707 3300006178 Bacteria 2473
31 Ga0075367_10057058 3300006178 Bacteria 2321
32 Ga0075369_10235424 3300006186 Bacteria 849
33 Ga0075366_10025837 3300006195 Bacteria 3435
34 Ga0075366_10053667 3300006195 Bacteria 2394
35 Ga0075366_10225105 3300006195 Bacteria 1143
36 Ga0075370_10012708 3300006353 Bacteria 4458
37 Ga0075428_100492947 3300006844 Bacteria 1311
38 Ga0075430_100049877 3300006846 Bacteria 3532
39 Ga0105240_10086160 3300009093 Bacteria 3847
40 Ga0105240_10105679 3300009093 Bacteria 3417
41 Ga0111539_10029338 3300009094 Bacteria 6703
42 Ga0111539_10090496 3300009094 Bacteria 3596
43 Ga0111539_10318917 3300009094 Bacteria 1809
44 Ga0111539_10666654 3300009094 Bacteria 1211
45 Ga0105245_10020744 3300009098 Bacteria 5760
46 Ga0105247_10632236 3300009101 Bacteria 797
47 Ga0114129_10093868 3300009147 Unclassified 4156
48 Ga0114129_10475682 3300009147 Bacteria 1635
49 Ga0105249_10137384 3300009553 Bacteria 2341
50 Ga0157374_10064569 3300013296 Bacteria 3435
51 Ga0157380_10287510 3300014326 Bacteria 1508
52 Ga0157380_10607097 3300014326 Bacteria 1083
53 Ga0157376_10650033 3300014969 Bacteria 1055
54 Ga0207682_10175141 3300025893 Bacteria 978
55 Ga0207684_10067622 3300025910 Bacteria 3037
56 Ga0207695_10102731 3300025913 Bacteria 2851
57 Ga0207657_10366076 3300025919 Bacteria 1136
58 Ga0207649_10203559 3300025920 Bacteria 1400
59 Ga0207706_10433122 3300025933 Bacteria 1139
60 Ga0207670_10261419 3300025936 Bacteria 1342
61 Ga0207669_10462717 3300025937 Bacteria 1007
62 Ga0207667_10110208 3300025949 Bacteria 2840
63 Ga0207667_10350091 3300025949 Bacteria 1507
64 Ga0207667_10627349 3300025949 Unclassified 1082
65 Ga0207712_10098045 3300025961 Bacteria 2173
66 Ga0207668_10107522 3300025972 Bacteria 2086
67 Ga0207676_10872681 3300026095 Bacteria 881
68 Ga0209813_10040960 3300027866 Bacteria 1410
69 Ga0209813_10057558 3300027866 Bacteria 1233
70 Ga0207428_10147945 3300027907 Bacteria 1789
71 Ga0265326_10001708 3300028558 Bacteria 7605
72 Ga0265334_10036943 3300028573 Unclassified 1927
73 Ga0265323_10003803 3300028653 Bacteria 6582
74 Ga0265322_10004389 3300028654 Bacteria 4204
75 Ga0265322_10008303 3300028654 Bacteria 3026
76 Ga0265330_10038883 3300031235 Bacteria 2115
77 Ga0265320_10064407 3300031240 Bacteria 1741
78 Ga0265325_10054624 3300031241 Bacteria 2044
79 Ga0265316_10005973 3300031344 Bacteria 11717
80 Ga0265316_10040403 3300031344 Bacteria 3740
81 Ga0265316_10184385 3300031344 Bacteria 1553
82 Ga0316579_10135542 3300031691 Bacteria 1186
83 Ga0265342_10139062 3300031712 Bacteria 1356
84 Ga0316576_10010012 3300031727 Bacteria 6140
85 Ga0316576_10193455 3300031727 Unclassified 1533
86 Ga0316577_10000616 3300031733 Bacteria 14731
87 Ga0307409_100306145 3300031995 Bacteria 1481
88 Ga0307416_100349441 3300032002 Bacteria 1496
89 Ga0307416_100862576 3300032002 Bacteria 1004
90 Ga0316580_10035552 3300032139 Bacteria 1542
91 Ga0373955_0108327 3300035172 Bacteria 1604
92 Ga0316574_0003998 3300035398 Bacteria 7680
93 Ga0373947_0211492 3300035725 Bacteria 1272
94 Ga0373937_0329011 3300036401 Bacteria 1446
95 Ga0316582_0010876 3300036647 Bacteria 5006
96 Ga0316582_0067646 3300036647 Bacteria 2305
97 Ga0316582_0097906 3300036647 Bacteria 1939
98 Ga0316584_0404628 3300036712 Bacteria 972
99 Ga0373925_0101367 3300037068 Bacteria 2214
100 Ga0395905_0216405 3300037471 Bacteria 1794
101 Ga0436364_0719925 3300037853 Bacteria 2073
102 Ga0436364_1271513 3300037853 Bacteria 998
103 Ga0436363_0471448 3300039450 Bacteria 892
104 Ga0453684_0391816 3300044712 Bacteria 1558
105 Ga0451576_0078117 3300045051 Bacteria 3445
106 Ga0495638_0044132 3300046460 Bacteria 2810
107 Ga0495580_0254435 3300046472 Bacteria 1202
108 Ga0495639_0150114 3300046475 Bacteria 1124
109 Ga0495662_0023039 3300046476 Bacteria 3007
110 Ga0495594_0266424 3300046499 Bacteria 976
111 Ga0495586_0157734 3300046535 Bacteria 1279
112 Ga0495635_0394520 3300046663 Bacteria 920
113 Ga0495658_0139809 3300046683 Bacteria 1480
114 Ga0495613_0003659 3300046689 Bacteria 11521
115 Ga0495674_0279671 3300047319 Bacteria 1367
116 Ga0495672_0030568 3300047320 Bacteria 3376
117 Ga0501034_0042334 3300049571 Bacteria 4610
118 Ga0501034_0580785 3300049571 Bacteria 1028
119 Ga0501043_0221358 3300049579 Bacteria 1464
120 Ga0501047_0072658 3300049581 Bacteria 3311
121 Ga0501074_0400119 3300049590 Bacteria 974
122 nmdc:mga03n38_111520_c1 3300050490 Bacteria 1332
123 nmdc:mga03n38_140025_c1 3300050490 Bacteria 1207
124 nmdc:mga03n38_248105_c1 3300050490 Bacteria 939
125 nmdc:mga00v17_14394_c1 3300050491 Bacteria 4414
126 nmdc:mga0yw44_73006_c1 3300050492 Bacteria 2134
127 nmdc:mga0k408_22755_c1 3300050493 Bacteria 3531
128 nmdc:mga0k408_45901_c1 3300050493 Bacteria 2522
129 nmdc:mga06z11_170994_c1 3300050494 Bacteria 1248
130 nmdc:mga06z11_49394_c1 3300050494 Bacteria 2146
131 nmdc:mga04h51_20990_c1 3300050495 Bacteria 1959
132 nmdc:mga04h51_31915_c1 3300050495 Bacteria 1667
133 nmdc:mga07m45_24926_c1 3300050496 Bacteria 3279
134 nmdc:mga05p37_248000_c1 3300050507 Bacteria 2137
135 nmdc:mga08y16_254660_c1 3300050511 Bacteria 1814
136 nmdc:mga08y16_68623_c1 3300050511 Bacteria 3696
137 nmdc:mga08y16_693204_c1 3300050511 Bacteria 1019
138 nmdc:mga08y16_97946_c1 3300050511 Bacteria 3054
139 nmdc:mga0rr50_544114_c1 3300050513 Bacteria 988
140 nmdc:mga0sz30_218103_c1 3300050516 Bacteria 848
141 Ga0500568_0001167 3300053139 Bacteria 17550
142 nmdc:mga03683_7006_c1
143 JGI24735J21928_10009629
144 Ga0065712_10078151
145 Ga0065712_10097475
146 Ga0065715_10242935
147 Ga0065715_10273933
148 Ga0070670_100004084
149 Ga0070669_100231870
150 Ga0070675_100303902
151 Ga0070675_100933778
152 Ga0070674_100057188
153 Ga0070706_100242669
154 Ga0070699_100133624
155 Ga0070696_100193703
156 Ga0068855_100004313
157 Ga0068855_100342145
158 Ga0070664_100687962
159 Ga0068856_100731216
160 Ga0068852_100199027
161 Ga0068864_100535947
162 Ga0075365_10048528
163 Ga0075368_10007398
164 Ga0075368_10029203
165 Ga0075364_10001527
166 Ga0075364_10026748
167 Ga0075364_10193444
168 Ga0075362_10008476
169 Ga0075367_10008143
170 Ga0075367_10029216
171 Ga0075367_10049707
172 Ga0075367_10057058
173 Ga0075369_10235424
174 Ga0075366_10025837
175 Ga0075366_10053667
176 Ga0075366_10225105
177 Ga0075370_10012708
178 Ga0075428_100492947
179 Ga0075430_100049877
180 Ga0105240_10086160
181 Ga0105240_10105679
182 Ga0111539_10029338
183 Ga0111539_10090496
184 Ga0111539_10318917
185 Ga0111539_10666654
186 Ga0105245_10020744
187 Ga0105247_10632236
188 Ga0114129_10093868
189 Ga0114129_10475682
190 Ga0105249_10137384
191 Ga0157374_10064569
192 Ga0157380_10287510
193 Ga0157380_10607097
194 Ga0157376_10650033
195 Ga0207682_10175141
196 Ga0207684_10067622
197 Ga0207695_10102731
198 Ga0207657_10366076
199 Ga0207649_10203559
200 Ga0207706_10433122
201 Ga0207670_10261419
202 Ga0207669_10462717
203 Ga0207667_10110208
204 Ga0207667_10350091
205 Ga0207667_10627349
206 Ga0207712_10098045
207 Ga0207668_10107522
208 Ga0207676_10872681
209 Ga0209813_10040960
210 Ga0209813_10057558
211 Ga0207428_10147945
212 Ga0265326_10001708
213 Ga0265334_10036943
214 Ga0265323_10003803
215 Ga0265322_10004389
216 Ga0265322_10008303
217 Ga0265330_10038883
218 Ga0265320_10064407
219 Ga0265325_10054624
220 Ga0265316_10005973
221 Ga0265316_10040403
222 Ga0265316_10184385
223 Ga0316579_10135542
224 Ga0265342_10139062
225 Ga0316576_10010012
226 Ga0316576_10193455
227 Ga0316577_10000616
228 Ga0307409_100306145
229 Ga0307416_100349441
230 Ga0307416_100862576
231 Ga0316580_10035552
232 Ga0373955_0108327
233 Ga0316574_0003998
234 Ga0373947_0211492
235 Ga0373937_0329011
236 Ga0316582_0010876
237 Ga0316582_0067646
238 Ga0316582_0097906
239 Ga0316584_0404628
240 Ga0373925_0101367
241 Ga0395905_0216405
242 Ga0436364_0719925
243 Ga0436364_1271513
244 Ga0436363_0471448
245 Ga0453684_0391816
246 Ga0451576_0078117
247 Ga0495638_0044132
248 Ga0495580_0254435
249 Ga0495639_0150114
250 Ga0495662_0023039
251 Ga0495594_0266424
252 Ga0495586_0157734
253 Ga0495635_0394520
254 Ga0495658_0139809
255 Ga0495613_0003659
256 Ga0495674_0279671
257 Ga0495672_0030568
258 Ga0501034_0042334
259 Ga0501034_0580785
260 Ga0501043_0221358
261 Ga0501047_0072658
262 Ga0501074_0400119
263 nmdc:mga03n38_111520_c1
264 nmdc:mga03n38_140025_c1
265 nmdc:mga03n38_248105_c1
266 nmdc:mga00v17_14394_c1
267 nmdc:mga0yw44_73006_c1
268 nmdc:mga0k408_22755_c1
269 nmdc:mga0k408_45901_c1
270 nmdc:mga06z11_170994_c1
271 nmdc:mga06z11_49394_c1
272 nmdc:mga04h51_20990_c1
273 nmdc:mga04h51_31915_c1
274 nmdc:mga07m45_24926_c1
275 nmdc:mga05p37_248000_c1
276 nmdc:mga08y16_254660_c1
277 nmdc:mga08y16_68623_c1
278 nmdc:mga08y16_693204_c1
279 nmdc:mga08y16_97946_c1
280 nmdc:mga0rr50_544114_c1
281 nmdc:mga0sz30_218103_c1
282 Ga0500568_0001167

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

31

141

0.99

PF00486

Trans_reg_C

Transcriptional regulatory protein, C terminal

174

249

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
8fk2-assembly1.cif.gz_B the n-terminal vicr from streptococcus mutans 0.9803 1 121
6is2-assembly1.cif.gz_A crystal structure of staphylococcus aureus response regulator arlr receiver domain in complex with mg 0.9768 2 119
1nxx-assembly1.cif.gz_A-2 micarec ph 5.5 0.9726 3 119
5hm6-assembly1.cif.gz_A n-terminal domain of bfmr from acinetobacter baumannii 0.9685 1 119
1zh4-assembly1.cif.gz_A crystal structure of the mg+2/bef3-bound receiver domain of kdp potassium transport system response regulator kdpe 0.9679 1 121
ID Description Score Start End Superfamily
af_O07776_22_102_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9946 1 81 3.40.50.2300
af_Q2FXN6_3_86_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9944 3 84 3.40.50.2300
af_Q9KJN4_1_80_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9874 1 81 3.40.50.2300
af_P76340_1_79_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9836 3 81 3.40.50.2300
af_Q2G2U6_3_86_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9829 3 85 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A4R7EXH8-F1-model_v4 DNA-binding response OmpR family regulator 0.8386 1 222 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A841NZD2-F1-model_v4 deleted 0.8384 3 223
AF-A0A366EVM4-F1-model_v4 Two-component system OmpR family response regulator 0.8368 2 222 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A4R7EXH8-F1-model_v4 DNA-binding response OmpR family regulator 0.8254 1 222 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A366EVM4-F1-model_v4 Two-component system OmpR family response regulator 0.8173 2 222 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993

Map