F183435

General Info

Members Datasets Scaffolds Average Seq Length
141 85 141 329

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0020828|Ga0451577_0020828_346_1485
Length 379
Sequence MNATPEWGNAPKEIPGQDLDQQVSCLVAGVVARVIPLVKPRCVHYFQVMLRKCGLALVAAVLGIAAAGGADVIQLKDKAAVSGRILAEKPDQVVLDLGYTVLLVPREQIAKITRGEVETSVKRVASPKASDASPIRTAAAAEMERNGFYTPSSRAGSARSVRELVTELGESVVQVRTPSALGSGFIINEEGFLLTNFHVIEGETQISIELYLQRNGQLERKTCKQVRIVAMNKFQDLALLKIDDKDAPKFRAVVLGNSDALAVGEGVFAIGSPLGLERTVTEGILSTKTRQMAGELYLQTTAQINPGNSGGPLFNLSGEVVGITNMKITFGEGLGFAIPVEAVKFFLDHRDAYAYANDNPSNAYRYLEPPSRARIPVPE

Samples

Sample ID Description Type Environment
1 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
2 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
3 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
9 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
10 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
11 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
12 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
15 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
16 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
17 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
19 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
20 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
21 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
22 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
23 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
24 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
25 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
26 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
35 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
36 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
37 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
38 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
39 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
40 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
41 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
42 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
43 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
44 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
45 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
46 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
47 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
48 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
49 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
50 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
51 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
52 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
53 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
54 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
55 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
56 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
57 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
58 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
59 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
60 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
61 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
62 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
63 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
64 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
65 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
66 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
67 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
68 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
69 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
70 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
71 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
72 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
73 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
74 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
75 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
76 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
77 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
78 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
79 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
80 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
81 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
82 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
83 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
84 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
85 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.13
Rhizosphere 97.87
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070690_100000826 3300005330 Bacteria 15722
2 Ga0070689_100001194 3300005340 Bacteria 16430
3 Ga0070689_100018291 3300005340 Bacteria 5161
4 Ga0070688_100027429 3300005365 Bacteria 3393
5 Ga0070714_100025829 3300005435 Unclassified 4851
6 Ga0070705_100118984 3300005440 Unclassified 1702
7 Ga0070708_100053822 3300005445 Bacteria 3573
8 Ga0070681_10375521 3300005458 Bacteria 1332
9 Ga0070698_100337469 3300005471 Bacteria 1438
10 Ga0070686_100000544 3300005544 Bacteria 22500
11 Ga0068857_100046619 3300005577 Bacteria 3846
12 Ga0068864_100039806 3300005618 Bacteria 4017
13 Ga0068863_100064582 3300005841 Bacteria 3462
14 Ga0075428_100003861 3300006844 Bacteria 16462
15 Ga0075434_100251181 3300006871 Bacteria 1788
16 Ga0075435_100136057 3300007076 Unclassified 2058
17 Ga0105240_10008760 3300009093 Bacteria 14422
18 Ga0111539_10010954 3300009094 Bacteria 11414
19 Ga0111539_10068744 3300009094 Unclassified 4182
20 Ga0111539_10439447 3300009094 Bacteria 1519
21 Ga0111539_10450796 3300009094 Unclassified 1498
22 Ga0105242_10320455 3300009176 Unclassified 1421
23 Ga0157371_10082052 3300013102 Bacteria 2283
24 Ga0157374_10044084 3300013296 Unclassified 4123
25 Ga0157378_10169090 3300013297 Bacteria 2049
26 Ga0157372_10061565 3300013307 Bacteria 4203
27 Ga0157375_10000045 3300013308 Bacteria 151387
28 Ga0163163_10000083 3300014325 Bacteria 104503
29 Ga0163163_10108987 3300014325 Bacteria 2797
30 Ga0157379_10418322 3300014968 Bacteria 1234
31 Ga0207695_10066172 3300025913 Bacteria 3713
32 Ga0207693_10184908 3300025915 Archaea 1640
33 Ga0207664_10036017 3300025929 Bacteria 3823
34 Ga0207670_10037815 3300025936 Bacteria 3148
35 Ga0207677_10099620 3300026023 Bacteria 2135
36 Ga0207641_10015128 3300026088 Bacteria 6322
37 Ga0207641_10049913 3300026088 Unclassified 3538
38 Ga0207648_10407097 3300026089 Bacteria 1233
39 Ga0207674_10081353 3300026116 Bacteria 3241
40 Ga0207428_10053841 3300027907 Bacteria 3207
41 Ga0207428_10060722 3300027907 Unclassified 2994
42 Ga0265319_1000004 3300028563 Bacteria 305085
43 Ga0265323_10000305 3300028653 Bacteria 28362
44 Ga0265338_10000009 3300028800 Bacteria 448611
45 Ga0265338_10000240 3300028800 Bacteria 101444
46 Ga0265338_10004027 3300028800 Bacteria 20163
47 Ga0265338_10004376 3300028800 Bacteria 19111
48 Ga0265338_10009223 3300028800 Bacteria 11811
49 Ga0265338_10012472 3300028800 Bacteria 9689
50 Ga0265338_10014900 3300028800 Bacteria 8597
51 Ga0265338_10025482 3300028800 Bacteria 5999
52 Ga0265338_10026957 3300028800 Bacteria 5780
53 Ga0265338_10041787 3300028800 Bacteria 4283
54 Ga0265338_10049699 3300028800 Bacteria 3798
55 Ga0265338_10269361 3300028800 Unclassified 1248
56 Ga0265324_10004752 3300029957 Viruses 6018
57 Ga0265320_10022949 3300031240 Bacteria 3330
58 Ga0265325_10025128 3300031241 Unclassified 3235
59 Ga0265340_10019511 3300031247 Bacteria 3491
60 Ga0265340_10124711 3300031247 Unclassified 1184
61 Ga0265339_10034501 3300031249 Bacteria 2843
62 Ga0265339_10073289 3300031249 Bacteria 1821
63 Ga0265327_10008516 3300031251 Bacteria 7621
64 Ga0265316_10002823 3300031344 Bacteria 17777
65 Ga0265316_10006294 3300031344 Bacteria 11367
66 Ga0265313_10003459 3300031595 Bacteria 12766
67 Ga0265313_10010296 3300031595 Bacteria 5939
68 Ga0265314_10000554 3300031711 Bacteria 47642
69 Ga0265314_10011834 3300031711 Bacteria 7168
70 Ga0373947_0005524 3300035725 Bacteria 7378
71 Ga0373947_0084941 3300035725 Bacteria 1965
72 Ga0373937_0033512 3300036401 Bacteria 4665
73 Ga0373937_0038444 3300036401 Bacteria 4360
74 Ga0373925_0034462 3300037068 Unclassified 3731
75 Ga0373925_0108091 3300037068 Bacteria 2146
76 Ga0395905_0286311 3300037471 Bacteria 1535
77 Ga0451577_0020828 3300042876 Bacteria 6010
78 Ga0451577_0023613 3300042876 Bacteria 5605
79 Ga0451577_0089892 3300042876 Bacteria 2740
80 Ga0451577_0273147 3300042876 Bacteria 1531
81 Ga0453684_0007044 3300044712 Bacteria 21008
82 Ga0453684_0058449 3300044712 Unclassified 4981
83 Ga0451576_0042477 3300045051 Unclassified 4799
84 Ga0451576_0057646 3300045051 Unclassified 4060
85 Ga0451576_0074908 3300045051 Unclassified 3522
86 Ga0451576_0301431 3300045051 Bacteria 1676
87 Ga0451576_0513619 3300045051 Bacteria 1259
88 Ga0495592_0002002 3300046454 Bacteria 14358
89 Ga0495592_0067994 3300046454 Unclassified 2602
90 Ga0495629_0099920 3300046459 Bacteria 2025
91 Ga0495582_0037380 3300046473 Unclassified 2670
92 Ga0495639_0053321 3300046475 Bacteria 1842
93 Ga0495662_0048469 3300046476 Bacteria 2051
94 Ga0495662_0075685 3300046476 Bacteria 1633
95 Ga0495664_0017808 3300046477 Bacteria 4062
96 Ga0495618_0026871 3300046514 Bacteria 3580
97 Ga0495628_0002950 3300046516 Bacteria 15254
98 Ga0495628_0252830 3300046516 Bacteria 1315
99 Ga0495630_0000047 3300046517 Bacteria 98136
100 Ga0495630_0008788 3300046517 Bacteria 7254
101 Ga0495630_0098200 3300046517 Unclassified 2215
102 Ga0495630_0149180 3300046517 Bacteria 1779
103 Ga0495666_0061443 3300046526 Bacteria 1795
104 Ga0495640_0007036 3300046533 Bacteria 8857
105 Ga0495640_0075414 3300046533 Bacteria 2253
106 Ga0495586_0000003 3300046535 Bacteria 192041
107 Ga0495586_0017693 3300046535 Bacteria 3791
108 Ga0495586_0028817 3300046535 Bacteria 2971
109 Ga0495586_0036585 3300046535 Bacteria 2635
110 Ga0495586_0114666 3300046535 Bacteria 1502
111 Ga0495587_0126207 3300046536 Bacteria 1464
112 Ga0495645_0056598 3300046543 Bacteria 2847
113 Ga0495645_0174254 3300046543 Bacteria 1478
114 Ga0495667_0039077 3300046559 Bacteria 3158
115 Ga0495667_0285071 3300046559 Bacteria 1048
116 Ga0495634_0001352 3300046642 Bacteria 22321
117 Ga0495634_0005633 3300046642 Bacteria 9591
118 Ga0495634_0056073 3300046642 Bacteria 2634
119 Ga0495635_0014197 3300046663 Bacteria 5575
120 Ga0495657_0052573 3300046675 Bacteria 2730
121 Ga0495599_0006294 3300046678 Bacteria 7153
122 Ga0495647_0049349 3300046681 Bacteria 1630
123 Ga0495658_0006999 3300046683 Bacteria 5565
124 Ga0495658_0032968 3300046683 Bacteria 2833
125 Ga0495613_0005621 3300046689 Bacteria 9407
126 Ga0495613_0022619 3300046689 Bacteria 4683
127 Ga0495624_0091478 3300046690 Bacteria 1877
128 Ga0495624_0167211 3300046690 Unclassified 1342
129 Ga0495624_0220582 3300046690 Bacteria 1150
130 Ga0495674_0000675 3300047319 Bacteria 32150
131 Ga0495674_0011727 3300047319 Bacteria 8267
132 Ga0495680_0013065 3300047322 Bacteria 7263
133 Ga0496107_0349573 3300048910 Bacteria 1100
134 Ga0496112_0272477 3300048915 Unclassified 1641
135 Ga0496115_0005402 3300048918 Bacteria 9292
136 nmdc:mga06r32_81898_c1 3300050510 Bacteria 3143
137 nmdc:mga08y16_409363_c1 3300050511 Bacteria 1387
138 nmdc:mga08y16_52612_c1 3300050511 Bacteria 4260
139 nmdc:mga08y16_88465_c1 3300050511 Bacteria 3228
140 nmdc:mga0n895_265876_c1 3300050512 Bacteria 1740
141 nmdc:mga0a205_431326_c1 3300050515 Bacteria 1179

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026089 Ga0207648_10407097 Ga0207648_104070972 281
2 3300014325 Ga0163163_10000083 Ga0163163_100000837 302
3 3300048910 Ga0496107_0349573 Ga0496107_0349573_23_967 302
4 3300050510 nmdc:mga06r32_81898_c1 nmdc:mga06r32_81898_c1_599_1630 304
5 3300005340 Ga0070689_100018291 Ga0070689_1000182911 306
6 3300036401 Ga0373937_0033512 Ga0373937_0033512_3658_4629 306
7 3300046535 Ga0495586_0028817 Ga0495586_0028817_885_1856 306
8 3300046559 Ga0495667_0285071 Ga0495667_0285071_12_983 306
9 3300046642 Ga0495634_0001352 Ga0495634_0001352_21142_22113 306
10 3300046663 Ga0495635_0014197 Ga0495635_0014197_1980_2951 306
11 3300047322 Ga0495680_0013065 Ga0495680_0013065_2542_3513 306
12 3300045051 Ga0451576_0057646 Ga0451576_0057646_1668_2687 307
13 3300013308 Ga0157375_10000045 Ga0157375_1000004542 308
14 3300005458 Ga0070681_10375521 Ga0070681_103755211 309
15 3300042876 Ga0451577_0089892 Ga0451577_0089892_1446_2468 309
16 3300005435 Ga0070714_100025829 Ga0070714_1000258295 310
17 3300005440 Ga0070705_100118984 Ga0070705_1001189842 310
18 3300028800 Ga0265338_10009223 Ga0265338_100092236 310
19 3300028800 Ga0265338_10014900 Ga0265338_100149002 310
20 3300045051 Ga0451576_0074908 Ga0451576_0074908_1679_2644 310
21 3300048918 Ga0496115_0005402 Ga0496115_0005402_3734_4729 310
22 3300026023 Ga0207677_10099620 Ga0207677_100996202 311
23 3300046454 Ga0495592_0002002 Ga0495592_0002002_11248_12204 311
24 3300046476 Ga0495662_0075685 Ga0495662_0075685_475_1431 311
25 3300046477 Ga0495664_0017808 Ga0495664_0017808_1823_2779 311
26 3300046514 Ga0495618_0026871 Ga0495618_0026871_1524_2480 311
27 3300046516 Ga0495628_0002950 Ga0495628_0002950_10007_10963 311
28 3300046517 Ga0495630_0008788 Ga0495630_0008788_2967_3923 311
29 3300046533 Ga0495640_0007036 Ga0495640_0007036_571_1527 311
30 3300046535 Ga0495586_0017693 Ga0495586_0017693_210_1166 311
31 3300046543 Ga0495645_0056598 Ga0495645_0056598_543_1499 311
32 3300047319 Ga0495674_0011727 Ga0495674_0011727_6656_7612 311
33 3300044712 Ga0453684_0058449 Ga0453684_0058449_2652_3656 312
34 3300005544 Ga0070686_100000544 Ga0070686_10000054411 313
35 3300028800 Ga0265338_10049699 Ga0265338_100496992 313
36 3300037471 Ga0395905_0286311 Ga0395905_0286311_299_1270 313
37 3300046559 Ga0495667_0039077 Ga0495667_0039077_1254_2216 313
38 3300006844 Ga0075428_100003861 Ga0075428_1000038612 314
39 3300009094 Ga0111539_10010954 Ga0111539_100109545 314
40 3300025936 Ga0207670_10037815 Ga0207670_100378153 314
41 3300027907 Ga0207428_10053841 Ga0207428_100538413 314
42 3300028563 Ga0265319_1000004 Ga0265319_1000004302 314
43 3300028800 Ga0265338_10012472 Ga0265338_100124724 314
44 3300031251 Ga0265327_10008516 Ga0265327_100085165 314
45 3300031595 Ga0265313_10003459 Ga0265313_100034599 314
46 3300050511 nmdc:mga08y16_88465_c1 nmdc:mga08y16_88465_c1_1384_2397 314
47 3300007076 Ga0075435_100136057 Ga0075435_1001360572 315
48 3300028800 Ga0265338_10000009 Ga0265338_1000000970 315
49 3300028800 Ga0265338_10000240 Ga0265338_1000024041 315
50 3300029957 Ga0265324_10004752 Ga0265324_100047525 315
51 3300031247 Ga0265340_10019511 Ga0265340_100195116 315
52 3300031249 Ga0265339_10034501 Ga0265339_100345012 315
53 3300031249 Ga0265339_10073289 Ga0265339_100732891 315
54 3300042876 Ga0451577_0023613 Ga0451577_0023613_2306_3304 315
55 3300046475 Ga0495639_0053321 Ga0495639_0053321_784_1809 315
56 3300046526 Ga0495666_0061443 Ga0495666_0061443_273_1298 315
57 3300046533 Ga0495640_0075414 Ga0495640_0075414_353_1378 315
58 3300046535 Ga0495586_0036585 Ga0495586_0036585_1504_2529 315
59 3300046642 Ga0495634_0056073 Ga0495634_0056073_1204_2229 315
60 3300046683 Ga0495658_0006999 Ga0495658_0006999_2623_3648 315
61 3300046683 Ga0495658_0032968 Ga0495658_0032968_1340_2362 315
62 3300046689 Ga0495613_0005621 Ga0495613_0005621_3260_4285 315
63 3300046690 Ga0495624_0167211 Ga0495624_0167211_278_1303 315
64 3300009094 Ga0111539_10068744 Ga0111539_100687443 316
65 3300009094 Ga0111539_10439447 Ga0111539_104394471 316
66 3300009094 Ga0111539_10450796 Ga0111539_104507961 316
67 3300027907 Ga0207428_10060722 Ga0207428_100607222 316
68 3300028800 Ga0265338_10004027 Ga0265338_100040272 316
69 3300028800 Ga0265338_10025482 Ga0265338_100254823 316
70 3300028800 Ga0265338_10269361 Ga0265338_102693612 316
71 3300031241 Ga0265325_10025128 Ga0265325_100251281 316
72 3300031247 Ga0265340_10124711 Ga0265340_101247112 316
73 3300031344 Ga0265316_10002823 Ga0265316_100028238 316
74 3300031344 Ga0265316_10006294 Ga0265316_1000629411 316
75 3300031595 Ga0265313_10010296 Ga0265313_100102963 316
76 3300031711 Ga0265314_10011834 Ga0265314_100118343 316
77 3300050511 nmdc:mga08y16_52612_c1 nmdc:mga08y16_52612_c1_996_2021 316
78 3300005340 Ga0070689_100001194 Ga0070689_10000119413 317
79 3300005365 Ga0070688_100027429 Ga0070688_1000274292 317
80 3300005445 Ga0070708_100053822 Ga0070708_1000538222 317
81 3300005471 Ga0070698_100337469 Ga0070698_1003374692 317
82 3300005577 Ga0068857_100046619 Ga0068857_1000466192 317
83 3300005618 Ga0068864_100039806 Ga0068864_1000398063 317
84 3300005841 Ga0068863_100064582 Ga0068863_1000645821 317
85 3300006871 Ga0075434_100251181 Ga0075434_1002511812 317
86 3300009093 Ga0105240_10008760 Ga0105240_100087608 317
87 3300013102 Ga0157371_10082052 Ga0157371_100820522 317
88 3300013296 Ga0157374_10044084 Ga0157374_100440842 317
89 3300013297 Ga0157378_10169090 Ga0157378_101690901 317
90 3300013307 Ga0157372_10061565 Ga0157372_100615656 317
91 3300014325 Ga0163163_10108987 Ga0163163_101089873 317
92 3300014968 Ga0157379_10418322 Ga0157379_104183221 317
93 3300025913 Ga0207695_10066172 Ga0207695_100661724 317
94 3300025915 Ga0207693_10184908 Ga0207693_101849082 317
95 3300025929 Ga0207664_10036017 Ga0207664_100360172 317
96 3300026088 Ga0207641_10015128 Ga0207641_100151282 317
97 3300026088 Ga0207641_10049913 Ga0207641_100499132 317
98 3300026116 Ga0207674_10081353 Ga0207674_100813532 317
99 3300028653 Ga0265323_10000305 Ga0265323_1000030515 317
100 3300028800 Ga0265338_10004376 Ga0265338_1000437612 317
101 3300028800 Ga0265338_10026957 Ga0265338_100269572 317
102 3300028800 Ga0265338_10041787 Ga0265338_100417873 317
103 3300031240 Ga0265320_10022949 Ga0265320_100229492 317
104 3300031711 Ga0265314_10000554 Ga0265314_1000055429 317
105 3300035725 Ga0373947_0084941 Ga0373947_0084941_474_1475 317
106 3300036401 Ga0373937_0038444 Ga0373937_0038444_1056_2057 317
107 3300037068 Ga0373925_0108091 Ga0373925_0108091_622_1623 317
108 3300042876 Ga0451577_0020828 Ga0451577_0020828_346_1485 317
109 3300042876 Ga0451577_0273147 Ga0451577_0273147_476_1489 317
110 3300044712 Ga0453684_0007044 Ga0453684_0007044_13235_14242 317
111 3300045051 Ga0451576_0042477 Ga0451576_0042477_2785_3765 317
112 3300045051 Ga0451576_0513619 Ga0451576_0513619_44_1030 317
113 3300046459 Ga0495629_0099920 Ga0495629_0099920_85_1086 317
114 3300046473 Ga0495582_0037380 Ga0495582_0037380_1402_2403 317
115 3300046476 Ga0495662_0048469 Ga0495662_0048469_524_1525 317
116 3300046516 Ga0495628_0252830 Ga0495628_0252830_287_1270 317
117 3300046517 Ga0495630_0000047 Ga0495630_0000047_55899_56900 317
118 3300046517 Ga0495630_0149180 Ga0495630_0149180_121_1104 317
119 3300046535 Ga0495586_0000003 Ga0495586_0000003_140962_141963 317
120 3300046535 Ga0495586_0114666 Ga0495586_0114666_47_1030 317
121 3300046536 Ga0495587_0126207 Ga0495587_0126207_154_1137 317
122 3300046543 Ga0495645_0174254 Ga0495645_0174254_133_1116 317
123 3300046642 Ga0495634_0005633 Ga0495634_0005633_6317_7318 317
124 3300046675 Ga0495657_0052573 Ga0495657_0052573_1231_2202 317
125 3300046678 Ga0495599_0006294 Ga0495599_0006294_4017_5000 317
126 3300046681 Ga0495647_0049349 Ga0495647_0049349_101_1102 317
127 3300046689 Ga0495613_0022619 Ga0495613_0022619_629_1630 317
128 3300046690 Ga0495624_0091478 Ga0495624_0091478_811_1794 317
129 3300047319 Ga0495674_0000675 Ga0495674_0000675_22614_23615 317
130 3300048915 Ga0496112_0272477 Ga0496112_0272477_471_1484 317
131 3300050511 nmdc:mga08y16_409363_c1 nmdc:mga08y16_409363_c1_303_1274 317
132 3300050512 nmdc:mga0n895_265876_c1 nmdc:mga0n895_265876_c1_527_1516 317
133 3300050515 nmdc:mga0a205_431326_c1 nmdc:mga0a205_431326_c1_185_1159 317
134 3300005330 Ga0070690_100000826 Ga0070690_10000082613 318
135 3300009176 Ga0105242_10320455 Ga0105242_103204552 318
136 3300035725 Ga0373947_0005524 Ga0373947_0005524_4804_5934 318
137 3300037068 Ga0373925_0034462 Ga0373925_0034462_778_1908 318
138 3300045051 Ga0451576_0301431 Ga0451576_0301431_378_1415 318
139 3300046454 Ga0495592_0067994 Ga0495592_0067994_961_1977 318
140 3300046517 Ga0495630_0098200 Ga0495630_0098200_340_1470 318
141 3300046690 Ga0495624_0220582 Ga0495624_0220582_122_1132 318

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13365

Trypsin_2

Trypsin-like peptidase domain

182

323

0.9

PF00089

Trypsin

Trypsin

167

347

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
3nwu-assembly1.cif.gz_B substrate induced remodeling of the active site regulates htra1 activity 0.8976 99 284
5t63-assembly1.cif.gz_A the hhoa protease from synechocystis sp. pcc 6803 0.8955 99 286
5b6l-assembly1.cif.gz_A structure of deg protease hhoa from synechocystis sp. pcc 6803 0.8952 99 286
5gnd-assembly1.cif.gz_A structure of deg protease hhoa from synechocystis sp. pcc 6803 0.8937 99 288
8auk-assembly1.cif.gz_E cryo-em structure of human birc6 in complex with htra2. 0.8917 99 282
ID Description Score Start End Superfamily
4x9dF00 Mainly Beta;Roll;SH3 type barrels.; 0.8919 22 65 2.30.30.100
5t69A01 Mainly Beta;Beta Barrel;Thrombin, subunit H; 0.8856 99 286 2.40.10.120
af_Q8I1Q3_26_106_2.30.30.100 Mainly Beta;Roll;SH3 type barrels.; 0.8819 23 68 2.30.30.100
3tjnD02 Mainly Beta;Beta Barrel;Thrombin, subunit H;Trypsin-like serine proteases 0.8747 193 286 2.40.10.10
1l1jB02 Mainly Beta;Beta Barrel;Thrombin, subunit H;Trypsin-like serine proteases 0.8582 192 286 2.40.10.10
ID Description Score Start End GO Terms
AF-A0A3D6A6Y4-F1-model_v4 Serine protease 0.9433 77 298 GO:0004252
GO:0006508
AF-A0A3D6A6Y4-F1-model_v4 Serine protease 0.931 77 298 GO:0004252
GO:0006508
AF-X1KT42-F1-model_v4 Peptidase S1 domain-containing protein 0.9212 122 279 GO:0004252
GO:0006508
AF-A0A2G9N8V4-F1-model_v4 Serine protease 0.9091 98 286 GO:0004252
GO:0006508
GO:0016020
AF-A0A3C1V810-F1-model_v4 Peptidase S1 0.9066 71 250 GO:0004252
GO:0006508

Feature Viewer

pLDDT pTM Quality
77.39 0.66 Medium
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Predicted Structure (AlphaFold2)

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