F182831

General Info

Members Datasets Scaffolds Average Seq Length
141 106 282 333

Family's Representative Sequence

Representative Sequence 3300025928|Ga0207700_10143651|Ga0207700_101436512
Length 388
Sequence MARVATRTQTVRRTGTMAAAEKPDAAAPDEARRSAGMAEPGRNSSSEEFGRLTDPFRHELLAHCYRMLGSVHDAEDLVQETYLRAWRSYGGFQGRSSLRTWLYRIATNACLTALEHRERRALPSGLGAASEPPAAPLPPDRANEIPWLEPMPDALVGLGAGGGADRGTLSQDAMSLDPAAVVVSRESMRLAWVAALQLLPPRQRAALILHDVLAWRAHEVAELLGTTTAAVNSALQRARAQLQQDAPTQDAVAEPADPKLRSVLDRYAAAFEQTDLPALLRLLREDVIVEMPPRPMWYAGREAAGQFFGIQVLSRDRGFVMVPTSANGQPAVLGYVPDSNGVAQAHAVHVLTITDTGISRIVAFLNPEPIVLGGFGLPLSGVLPTTRR

Samples

Sample ID Description Type Environment
1 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
7 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
30 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
31 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
44 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
45 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
46 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
47 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
48 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
49 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
50 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
51 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
52 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
53 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
54 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
55 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
56 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
57 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
58 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
59 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
60 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
61 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
62 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
63 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
64 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
65 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
66 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
67 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
68 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
69 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
70 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
71 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
72 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
73 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
74 2513237305 Mesorhizobium amorphae CCNWGS0123 Isolate Nodule
75 2693429783 Mesorhizobium sp. LCM 4577 Isolate Rhizosphere
76 2693429784 Mesorhizobium sp. LCM 4576 Isolate Rhizosphere
77 2721755686 Mesorhizobium amorphae CCNWGS0123 Isolate Nodule
78 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
79 2824679649 Bradyrhizobium sp.HAMBI 2116 Isolate Unclassified
80 2857349434 Mesorhizobium sp. M2E.F.Ca.ET.166.01.1.1 Isolate Nodule
81 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
82 2876377896 Mesorhizobium sp. M2C.T.Ca.TU.009.01.2.1 Isolate Nodule
83 2876392853 Mesorhizobium sp. M1D.F.Ca.ET.234.01.1.1 Isolate Nodule
84 2885326080 Mesorhizobium sp. M1E.F.Ca.ET.041.01.1.1 Isolate Nodule
85 2888350351 Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 Isolate Nodule
86 2889010040 Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 Isolate Nodule
87 2889016732 Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 Isolate Nodule
88 2904659560 Mesorhizobium sp. M1D.F.Ca.ET.184.01.1.1 Isolate Nodule
89 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
90 2938014810 Mesorhizobium sp. M2C.T.Ca.TU.002.02.1.1 Isolate Nodule
91 2958100919 Mesorhizobium sp. M2A.F.Ca.ET.015.02.1.1 Isolate Nodule
92 2958172287 Mesorhizobium sp. M2A.F.Ca.ET.029.05.1.1 Isolate Nodule
93 2961114664 Mesorhizobium sp. M1D.F.Ca.ET.231.01.1.1 Isolate Nodule
94 2965119406 Mesorhizobium sp. M2A.F.Ca.ET.067.02.1.1 Isolate Nodule
95 2968110612 Mesorhizobium sp. M1D.F.Ca.ET.183.01.1.1 Isolate Nodule
96 2968117919 Mesorhizobium atlanticum CNPSo 3140 Isolate Unclassified
97 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
98 2977942078 Mesorhizobium sp. M2E.F.Ca.ET.209.01.1.1 Isolate Nodule
99 2979710463 Mesorhizobium sp. M2A.F.Ca.ET.017.03.2.1 Isolate Nodule
100 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
101 2987636660 Mesorhizobium sp. M2E.F.Ca.ET.154.01.1.1 Isolate Nodule
102 2987652177 Mesorhizobium sp. M2A.F.Ca.ET.042.01.1.1 Isolate Nodule
103 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
104 3004203850 Mesorhizobium sp. M2E.F.Ca.ET.219.01.1.1 Isolate Nodule
105 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
106 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 75.89
Metatranscriptomes 0.71
Isolates 23.4

Biome Distribution

Category Percentage (%)
Aerial Root 0.71
Bulb 0
Endosphere 0
Nodule 14.89
Rhizoplane 3.55
Rhizosphere 71.63
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207700_10143651 3300025928 Bacteria 1964
2 JGI25406J46586_10010588 3300003203 Bacteria 4088
3 rootH1_10055629 3300003323 Bacteria 1513
4 JGI25407J50210_10008784 3300003373 Bacteria 2550
5 Ga0070660_100060493 3300005339 Bacteria 2940
6 Ga0070673_100014776 3300005364 Bacteria 5457
7 Ga0070688_100005685 3300005365 Bacteria 6586
8 Ga0070688_100098660 3300005365 Bacteria 1922
9 Ga0070709_10026738 3300005434 Bacteria 3423
10 Ga0070714_100000937 3300005435 Bacteria 20745
11 Ga0070714_100003222 3300005435 Bacteria 12146
12 Ga0070714_100006002 3300005435 Bacteria 9325
13 Ga0070714_100036890 3300005435 Bacteria 4103
14 Ga0070714_100404197 3300005435 Bacteria 1291
15 Ga0070713_100040730 3300005436 Bacteria 3778
16 Ga0070713_100044608 3300005436 Bacteria 3630
17 Ga0070713_100085904 3300005436 Bacteria 2696
18 Ga0070713_100088552 3300005436 Bacteria 2657
19 Ga0070711_100029215 3300005439 Bacteria 3636
20 Ga0070711_100040743 3300005439 Bacteria 3134
21 Ga0070708_100003453 3300005445 Bacteria 12365
22 Ga0070706_100008562 3300005467 Bacteria 9535
23 Ga0070706_100111337 3300005467 Bacteria 2547
24 Ga0070707_100079763 3300005468 Bacteria 3159
25 Ga0070698_100010095 3300005471 Bacteria 10085
26 Ga0070698_100079649 3300005471 Bacteria 3272
27 Ga0070679_100132493 3300005530 Bacteria 2474
28 Ga0070679_100175355 3300005530 Bacteria 2116
29 Ga0070697_100086073 3300005536 Bacteria 2593
30 Ga0070665_100069774 3300005548 Bacteria 3522
31 Ga0068856_100076377 3300005614 Bacteria 3319
32 Ga0068860_100119276 3300005843 Bacteria 2525
33 Ga0081455_10019290 3300005937 Bacteria 6455
34 Ga0081455_10020479 3300005937 Bacteria 6224
35 Ga0081455_10036688 3300005937 Bacteria 4360
36 Ga0081455_10043731 3300005937 Bacteria 3914
37 Ga0081538_10000672 3300005981 Bacteria 37620
38 Ga0081538_10004677 3300005981 Bacteria 12543
39 Ga0081538_10008001 3300005981 Bacteria 9040
40 Ga0081539_10001628 3300005985 Bacteria 36740
41 Ga0070712_100033889 3300006175 Bacteria 3458
42 Ga0070712_100252489 3300006175 Bacteria 1410
43 Ga0114129_10254244 3300009147 Bacteria 2357
44 Ga0114129_10301704 3300009147 Bacteria 2135
45 Ga0105249_10159898 3300009553 Bacteria 2176
46 Ga0157370_10110566 3300013104 Bacteria 2569
47 Ga0157369_10281411 3300013105 Bacteria 1732
48 Ga0213875_10073997 3300021388 Bacteria 1589
49 Ga0224712_10007172 3300022467 Bacteria 3228
50 Ga0207647_10026535 3300025904 Bacteria 3789
51 Ga0207684_10015067 3300025910 Bacteria 6655
52 Ga0207693_10098933 3300025915 Bacteria 2287
53 Ga0207663_10213297 3300025916 Bacteria 1401
54 Ga0207657_10044148 3300025919 Bacteria 3920
55 Ga0207652_10005690 3300025921 Bacteria 10118
56 Ga0207646_10010481 3300025922 Bacteria 9052
57 Ga0207646_10277855 3300025922 Bacteria 1513
58 Ga0207659_10148372 3300025926 Bacteria 1829
59 Ga0207700_10008621 3300025928 Bacteria 6330
60 Ga0207700_10014931 3300025928 Bacteria 5104
61 Ga0207700_10083887 3300025928 Bacteria 2496
62 Ga0207664_10001327 3300025929 Bacteria 16297
63 Ga0207664_10002923 3300025929 Bacteria 11355
64 Ga0207664_10003363 3300025929 Bacteria 10639
65 Ga0207664_10004410 3300025929 Bacteria 9528
66 Ga0207664_10022973 3300025929 Bacteria 4666
67 Ga0207664_10397695 3300025929 Bacteria 1225
68 Ga0207702_10070446 3300026078 Bacteria 3007
69 Ga0268265_10093268 3300028380 Bacteria 2412
70 Ga0268264_10155295 3300028381 Bacteria 2056
71 Ga0265340_10014706 3300031247 Bacteria 4082
72 Ga0307405_10051987 3300031731 Bacteria 2545
73 Ga0307412_10106282 3300031911 Bacteria 1995
74 Ga0307409_100048108 3300031995 Bacteria 3242
75 Ga0307507_10000005 3300033179 Bacteria 281494
76 Ga0373938_0017456 3300034957 Bacteria 1414
77 Ga0373943_0064749 3300035170 Bacteria 1836
78 Ga0373946_0054086 3300035171 Bacteria 1688
79 Ga0373927_0075201 3300035695 Bacteria 2187
80 Ga0373947_0091582 3300035725 Bacteria 1897
81 Ga0395899_0112073 3300037312 Bacteria 1960
82 Ga0395900_0027409 3300037418 Bacteria 5835
83 Ga0395898_0080874 3300037466 Bacteria 3133
84 Ga0395898_0250112 3300037466 Bacteria 1691
85 Ga0395905_0023920 3300037471 Bacteria 5767
86 Ga0395905_0059988 3300037471 Bacteria 3557
87 Ga0436364_0901095 3300037853 Bacteria 2888
88 Ga0436364_0970892 3300037853 Bacteria 2557
89 Ga0395901_0056492 3300038443 Bacteria 4083
90 Ga0436365_1750366 3300039437 Bacteria 1747
91 Ga0466963_0068319 3300044694 Bacteria 2386
92 Ga0466967_0011095 3300045976 Bacteria 6805
93 Ga0466967_0062674 3300045976 Bacteria 3301
94 Ga0466967_0177352 3300045976 Bacteria 2008
95 Ga0466967_0446283 3300045976 Bacteria 1264
96 Ga0495638_0130639 3300046460 Bacteria 1475
97 Ga0495651_0018898 3300046462 Bacteria 5339
98 Ga0495594_0162460 3300046499 Bacteria 1270
99 Ga0495652_0060119 3300046529 Bacteria 3212
100 Ga0496104_0485945 3300048907 Bacteria 1146
101 Ga0496108_0084804 3300048911 Bacteria 2689
102 Ga0496110_0528935 3300048913 Bacteria 1072
103 Ga0496114_0003171 3300048917 Bacteria 12612
104 Ga0496114_0226699 3300048917 Bacteria 1641
105 Ga0496126_0013787 3300048929 Bacteria 8196
106 Ga0501074_0182297 3300049590 Bacteria 1498
107 nmdc:mga05p37_300335_c1 3300050507 Bacteria 1908
108 nmdc:mga06r32_242476_c1 3300050510 Bacteria 1790
109 2514423471 2513237305 Bacteria 7293571
110 2694628347 2693429783 Bacteria 7019804
111 2694640796 2693429784 Bacteria 7241525
112 2723572727 2721755686 Bacteria 7343952
113 2753070611 2751185734 Bacteria 8863695
114 2824684171 2824679649 Bacteria 8248951
115 2857349985 2857349434 Bacteria 7926032
116 2870726830 2870721527 Bacteria 9689237
117 2876381632 2876377896 Bacteria 6565995
118 2876397449 2876392853 Bacteria 6660880
119 2885327959 2885326080 Bacteria 7134805
120 2888352661 2888350351 Bacteria 7372807
121 2889014435 2889010040 Bacteria 6749192
122 2889020579 2889016732 Bacteria 6700763
123 2904664203 2904659560 Bacteria 6685615
124 2917744833 2917736166 Bacteria 9690793
125 2938021450 2938014810 Bacteria 6700592
126 2958106249 2958100919 Bacteria 6800575
127 2958172476 2958172287 Bacteria 6716688
128 2961118657 2961114664 Bacteria 6680456
129 2965124324 2965119406 Bacteria 6956431
130 2968115342 2968110612 Bacteria 6814636
131 2968121817 2968117919 Bacteria 6536078
132 2974319919 2974315732 Bacteria 4602776
133 2977950549 2977942078 Bacteria 7570577
134 2979713318 2979710463 Bacteria 6785254
135 2984523788 2984523437 Bacteria 4508481
136 2987637088 2987636660 Bacteria 8088555
137 2987655328 2987652177 Bacteria 6969023
138 2990046413 2990044586 Bacteria 6603797
139 3004209876 3004203850 Bacteria 7307914
140 8001784737 8001781756 Bacteria 9586736
141 8033691014 8033684223 Bacteria 6906479
142 Ga0207700_10143651
143 JGI25406J46586_10010588
144 rootH1_10055629
145 JGI25407J50210_10008784
146 Ga0070660_100060493
147 Ga0070673_100014776
148 Ga0070688_100005685
149 Ga0070688_100098660
150 Ga0070709_10026738
151 Ga0070714_100000937
152 Ga0070714_100003222
153 Ga0070714_100006002
154 Ga0070714_100036890
155 Ga0070714_100404197
156 Ga0070713_100040730
157 Ga0070713_100044608
158 Ga0070713_100085904
159 Ga0070713_100088552
160 Ga0070711_100029215
161 Ga0070711_100040743
162 Ga0070708_100003453
163 Ga0070706_100008562
164 Ga0070706_100111337
165 Ga0070707_100079763
166 Ga0070698_100010095
167 Ga0070698_100079649
168 Ga0070679_100132493
169 Ga0070679_100175355
170 Ga0070697_100086073
171 Ga0070665_100069774
172 Ga0068856_100076377
173 Ga0068860_100119276
174 Ga0081455_10019290
175 Ga0081455_10020479
176 Ga0081455_10036688
177 Ga0081455_10043731
178 Ga0081538_10000672
179 Ga0081538_10004677
180 Ga0081538_10008001
181 Ga0081539_10001628
182 Ga0070712_100033889
183 Ga0070712_100252489
184 Ga0114129_10254244
185 Ga0114129_10301704
186 Ga0105249_10159898
187 Ga0157370_10110566
188 Ga0157369_10281411
189 Ga0213875_10073997
190 Ga0224712_10007172
191 Ga0207647_10026535
192 Ga0207684_10015067
193 Ga0207693_10098933
194 Ga0207663_10213297
195 Ga0207657_10044148
196 Ga0207652_10005690
197 Ga0207646_10010481
198 Ga0207646_10277855
199 Ga0207659_10148372
200 Ga0207700_10008621
201 Ga0207700_10014931
202 Ga0207700_10083887
203 Ga0207664_10001327
204 Ga0207664_10002923
205 Ga0207664_10003363
206 Ga0207664_10004410
207 Ga0207664_10022973
208 Ga0207664_10397695
209 Ga0207702_10070446
210 Ga0268265_10093268
211 Ga0268264_10155295
212 Ga0265340_10014706
213 Ga0307405_10051987
214 Ga0307412_10106282
215 Ga0307409_100048108
216 Ga0307507_10000005
217 Ga0373938_0017456
218 Ga0373943_0064749
219 Ga0373946_0054086
220 Ga0373927_0075201
221 Ga0373947_0091582
222 Ga0395899_0112073
223 Ga0395900_0027409
224 Ga0395898_0080874
225 Ga0395898_0250112
226 Ga0395905_0023920
227 Ga0395905_0059988
228 Ga0436364_0901095
229 Ga0436364_0970892
230 Ga0395901_0056492
231 Ga0436365_1750366
232 Ga0466963_0068319
233 Ga0466967_0011095
234 Ga0466967_0062674
235 Ga0466967_0177352
236 Ga0466967_0446283
237 Ga0495638_0130639
238 Ga0495651_0018898
239 Ga0495594_0162460
240 Ga0495652_0060119
241 Ga0496104_0485945
242 Ga0496108_0084804
243 Ga0496110_0528935
244 Ga0496114_0003171
245 Ga0496114_0226699
246 Ga0496126_0013787
247 Ga0501074_0182297
248 nmdc:mga05p37_300335_c1
249 nmdc:mga06r32_242476_c1
250 2514423471
251 2694628347
252 2694640796
253 2723572727
254 2753070611
255 2824684171
256 2857349985
257 2870726830
258 2876381632
259 2876397449
260 2885327959
261 2888352661
262 2889014435
263 2889020579
264 2904664203
265 2917744833
266 2938021450
267 2958106249
268 2958172476
269 2961118657
270 2965124324
271 2968115342
272 2968121817
273 2974319919
274 2977950549
275 2979713318
276 2984523788
277 2987637088
278 2987655328
279 2990046413
280 3004209876
281 8001784737
282 8033691014

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08281

Sigma70_r4_2

Sigma-70, region 4

189

242

0.95

PF04542

Sigma70_r2

Sigma-70 region 2

52

120

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9796 137 184
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9709 136 183
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.9641 136 185
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9636 136 185
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.9621 136 185
ID Description Score Start End Superfamily
af_P9WGG5_46_131_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9943 2 80 1.10.1740.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9796 137 184 1.10.10.10
2o8xB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9709 136 183 1.10.10.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9641 136 185 1.10.10.10
3vepH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9621 136 185 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A498P895-F1-model_v4 deleted 0.9727 260 320
AF-A0A7W1S509-F1-model_v4 Nuclear transport factor 2 family protein 0.9718 210 322
AF-A0A6V8KL02-F1-model_v4 RNA polymerase sigma factor 0.9702 6 321 GO:0003677
GO:0006352
GO:0016987
AF-A0A1H8T5N0-F1-model_v4 RNA polymerase, sigma subunit, ECF family 0.969 2 324 GO:0003677
GO:0006352
GO:0016987
AF-A0A7K1UV57-F1-model_v4 RNA polymerase sigma factor 0.969 2 322 GO:0003677
GO:0006352
GO:0006950
GO:0016987

Map