F182515

General Info

Members Datasets Scaffolds Average Seq Length
141 83 141 252

Family's Representative Sequence

Representative Sequence 3300009177|Ga0105248_10897936|Ga0105248_108979361
Length 303
Sequence MMPLPLLCHGAVRRAIGRKGTGSVLSDDAVKWSPDAPIEGLESLRREAEKYMQLKAVKINVDIARNLWGDLSPIAFRCLEDLSRRYLLSVTSGDILFLEGRWYVTHSGLLGIARRKRCMGIQVAPAIGFCDPPASRWAFKATVYKSQACRGFVGYGDADPSNVSPLVHGAEMRVAETRAVNRALRKAYGIGICSVEEIGSFAEPVPSARQSKKLPPQNVNGKDGNYGGPKVRDHLCQLIRQHQLDANLVKSYAVDFCGTKSLREASREQVEAFVAHLADWAEKDRNALLCQLNSYLGSKEGAA

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
6 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
25 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
30 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
31 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
36 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
37 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
41 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
69 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
70 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
71 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
72 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
73 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
74 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
75 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
76 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
77 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
78 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
79 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
80 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
81 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
82 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
83 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 4.96
Rhizosphere 94.33
Stem 0
Stem Tuber 0
Unclassified 0.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10312272 3300003323 Bacteria 1726
2 Ga0070676_10025798 3300005328 Bacteria 3324
3 Ga0070683_100052287 3300005329 Viruses 3784
4 Ga0070661_100068360 3300005344 Bacteria 2611
5 Ga0070673_100116426 3300005364 Unclassified 2223
6 Ga0070667_100020313 3300005367 Bacteria 5513
7 Ga0070714_100005082 3300005435 Bacteria 10009
8 Ga0070714_100086562 3300005435 Bacteria 2738
9 Ga0070714_100182044 3300005435 Unclassified 1912
10 Ga0070714_100424055 3300005435 Unclassified 1261
11 Ga0070714_100446392 3300005435 Bacteria 1228
12 Ga0070711_100334244 3300005439 Bacteria 1214
13 Ga0070708_100041692 3300005445 Bacteria 4025
14 Ga0070708_100065739 3300005445 Bacteria 3252
15 Ga0070708_100108447 3300005445 Bacteria 2550
16 Ga0070708_100199995 3300005445 Bacteria 1870
17 Ga0070708_100245165 3300005445 Unclassified 1683
18 Ga0070708_100474987 3300005445 Unclassified 1180
19 Ga0070708_100661982 3300005445 Bacteria 984
20 Ga0070685_10118208 3300005466 Unclassified 1643
21 Ga0070706_100045984 3300005467 Unclassified 4030
22 Ga0070706_100105267 3300005467 Bacteria 2625
23 Ga0070706_100417651 3300005467 Unclassified 1248
24 Ga0070707_100019192 3300005468 Bacteria 6441
25 Ga0070707_100313841 3300005468 Bacteria 1524
26 Ga0070699_100738957 3300005518 Unclassified 900
27 Ga0070684_100051695 3300005535 Bacteria 3571
28 Ga0070697_100000501 3300005536 Bacteria 29685
29 Ga0070697_100010366 3300005536 Bacteria 7269
30 Ga0070697_100021445 3300005536 Bacteria 5118
31 Ga0070697_100144537 3300005536 Bacteria 2001
32 Ga0070697_100289422 3300005536 Unclassified 1407
33 Ga0070665_100010125 3300005548 Bacteria 9536
34 Ga0070665_100041785 3300005548 Bacteria 4609
35 Ga0070665_100313192 3300005548 Bacteria 1573
36 Ga0068855_100321814 3300005563 Bacteria 1709
37 Ga0068855_100374783 3300005563 Bacteria 1564
38 Ga0070664_100202403 3300005564 Bacteria 1772
39 Ga0068854_100041159 3300005578 Bacteria 3264
40 Ga0068856_100002220 3300005614 Bacteria 20098
41 Ga0068856_100026364 3300005614 Bacteria 5667
42 Ga0068856_100337321 3300005614 Bacteria 1525
43 Ga0068856_100384995 3300005614 Bacteria 1422
44 Ga0068864_100023451 3300005618 Bacteria 5182
45 Ga0068863_100006619 3300005841 Bacteria 11374
46 Ga0068863_100028502 3300005841 Bacteria 5332
47 Ga0068858_100035570 3300005842 Bacteria 4620
48 Ga0070717_10117990 3300006028 Bacteria 2270
49 Ga0070717_10204280 3300006028 Unclassified 1732
50 Ga0070716_100032217 3300006173 Plasmid 2857
51 Ga0070716_100252994 3300006173 Bacteria 1201
52 Ga0070712_100003165 3300006175 Bacteria 10140
53 Ga0097621_100366494 3300006237 Bacteria 1284
54 Ga0068871_100079739 3300006358 Bacteria 2709
55 Ga0075436_100000853 3300006914 Bacteria 20269
56 Ga0075436_100222912 3300006914 Unclassified 1338
57 Ga0075435_100295295 3300007076 Bacteria 1385
58 Ga0099795_10032633 3300007788 Archaea 1802
59 Ga0105240_10138219 3300009093 Unclassified 2915
60 Ga0105248_10897936 3300009177 Bacteria 1000
61 Ga0105239_10175439 3300010375 Unclassified 2397
62 Ga0157369_10634852 3300013105 Bacteria 1102
63 Ga0157374_10038939 3300013296 Unclassified 4372
64 Ga0157374_10050333 3300013296 Bacteria 3872
65 Ga0157374_10093186 3300013296 Bacteria 2875
66 Ga0157374_10102956 3300013296 Bacteria 2739
67 Ga0157378_10028929 3300013297 Unclassified 4891
68 Ga0163162_10217306 3300013306 Bacteria 2042
69 Ga0157372_10020137 3300013307 Bacteria 7194
70 Ga0157372_10031653 3300013307 Bacteria 5792
71 Ga0157372_10096991 3300013307 Unclassified 3361
72 Ga0157372_10136695 3300013307 Bacteria 2823
73 Ga0157372_10147646 3300013307 Bacteria 2712
74 Ga0157372_10283382 3300013307 Bacteria 1927
75 Ga0157372_11152698 3300013307 Bacteria 896
76 Ga0157376_10051241 3300014969 Bacteria 3428
77 Ga0157376_10216069 3300014969 Bacteria 1773
78 Ga0207645_10027987 3300025907 Bacteria 3639
79 Ga0207684_10050511 3300025910 Unclassified 3528
80 Ga0207684_10205728 3300025910 Bacteria 1698
81 Ga0207684_10470443 3300025910 Unclassified 1078
82 Ga0207695_10027423 3300025913 Bacteria 6343
83 Ga0207695_10029441 3300025913 Bacteria 6067
84 Ga0207695_10104434 3300025913 Bacteria 2822
85 Ga0207671_10076610 3300025914 Bacteria 2503
86 Ga0207671_10571387 3300025914 Bacteria 901
87 Ga0207693_10283319 3300025915 Bacteria 1299
88 Ga0207693_10429489 3300025915 Bacteria 1033
89 Ga0207663_10105919 3300025916 Bacteria 1899
90 Ga0207663_10429522 3300025916 Unclassified 1015
91 Ga0207649_10647119 3300025920 Bacteria 816
92 Ga0207646_10049119 3300025922 Bacteria 3779
93 Ga0207646_10082116 3300025922 Bacteria 2882
94 Ga0207646_10168315 3300025922 Unclassified 1979
95 Ga0207694_10036007 3300025924 Bacteria 3797
96 Ga0207650_10059278 3300025925 Bacteria 2853
97 Ga0207700_10160187 3300025928 Unclassified 1868
98 Ga0207664_10045185 3300025929 Bacteria 3453
99 Ga0207664_10110556 3300025929 Unclassified 2285
100 Ga0207664_10338185 3300025929 Unclassified 1331
101 Ga0207664_10889777 3300025929 Unclassified 800
102 Ga0207690_10334330 3300025932 Unclassified 1194
103 Ga0207670_10078894 3300025936 Unclassified 2297
104 Ga0207665_10053398 3300025939 Plasmid 2724
105 Ga0207665_10062223 3300025939 Unclassified 2532
106 Ga0207711_10128243 3300025941 Bacteria 2271
107 Ga0207711_10176482 3300025941 Unclassified 1941
108 Ga0207661_10032116 3300025944 Viruses 4065
109 Ga0207679_10019557 3300025945 Bacteria 4552
110 Ga0207667_10121457 3300025949 Bacteria 2692
111 Ga0207712_10378473 3300025961 Unclassified 1184
112 Ga0207677_10043307 3300026023 Viruses 2992
113 Ga0207703_10052024 3300026035 Bacteria 3323
114 Ga0207703_10737695 3300026035 Bacteria 938
115 Ga0207678_10027779 3300026067 Unclassified 4940
116 Ga0207702_10023516 3300026078 Bacteria 5111
117 Ga0207702_10046125 3300026078 Bacteria 3668
118 Ga0207702_10172504 3300026078 Bacteria 1985
119 Ga0207641_10014807 3300026088 Bacteria 6393
120 Ga0207641_10022146 3300026088 Bacteria 5229
121 Ga0207641_10075161 3300026088 Bacteria 2917
122 Ga0207676_10047292 3300026095 Bacteria 3333
123 Ga0268266_10004325 3300028379 Bacteria 13659
124 Ga0373962_0032701 3300035242 Bacteria 1432
125 Ga0373927_0051711 3300035695 Bacteria 2657
126 Ga0373937_0185962 3300036401 Unclassified 1951
127 Ga0495580_0002725 3300046472 Bacteria 15264
128 Ga0495582_0375208 3300046473 Bacteria 819
129 Ga0495630_0508923 3300046517 Bacteria 923
130 Ga0495634_0075366 3300046642 Unclassified 2216
131 Ga0495593_0207805 3300047673 Bacteria 983
132 Ga0495602_0080210 3300048088 Unclassified 2750
133 Ga0496106_0379012 3300048909 Unclassified 1137
134 Ga0496108_0422411 3300048911 Unclassified 1164
135 Ga0496109_0524703 3300048912 Unclassified 1118
136 Ga0496112_0118386 3300048915 Bacteria 2619
137 Ga0496112_0200466 3300048915 Bacteria 1955
138 Ga0496112_0270843 3300048915 Bacteria 1646
139 Ga0496115_0033128 3300048918 Bacteria 4078
140 nmdc:mga0rr50_282957_c1 3300050513 Bacteria 1384
141 nmdc:mga08x19_585_c1 3300050514 Bacteria 23719

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013307 Ga0157372_10096991 Ga0157372_100969914 204
2 3300046473 Ga0495582_0375208 Ga0495582_0375208_13_669 210
3 3300046517 Ga0495630_0508923 Ga0495630_0508923_255_911 210
4 3300046642 Ga0495634_0075366 Ga0495634_0075366_211_867 212
5 3300013296 Ga0157374_10102956 Ga0157374_101029564 218
6 3300013306 Ga0163162_10217306 Ga0163162_102173063 218
7 3300048911 Ga0496108_0422411 Ga0496108_0422411_265_927 218
8 3300048915 Ga0496112_0270843 Ga0496112_0270843_273_935 218
9 3300048909 Ga0496106_0379012 Ga0496106_0379012_200_895 227
10 3300013296 Ga0157374_10093186 Ga0157374_100931864 229
11 3300014969 Ga0157376_10051241 Ga0157376_100512411 229
12 3300048918 Ga0496115_0033128 Ga0496115_0033128_1717_2427 229
13 3300005536 Ga0070697_100289422 Ga0070697_1002894222 233
14 3300005614 Ga0068856_100384995 Ga0068856_1003849952 238
15 3300005439 Ga0070711_100334244 Ga0070711_1003342442 242
16 3300006175 Ga0070712_100003165 Ga0070712_1000031651 242
17 3300025915 Ga0207693_10283319 Ga0207693_102833191 242
18 3300025916 Ga0207663_10105919 Ga0207663_101059193 242
19 3300005445 Ga0070708_100474987 Ga0070708_1004749872 243
20 3300005468 Ga0070707_100313841 Ga0070707_1003138413 243
21 3300006028 Ga0070717_10117990 Ga0070717_101179903 243
22 3300006173 Ga0070716_100252994 Ga0070716_1002529942 243
23 3300005445 Ga0070708_100041692 Ga0070708_1000416923 244
24 3300013297 Ga0157378_10028929 Ga0157378_100289294 244
25 3300025916 Ga0207663_10429522 Ga0207663_104295222 244
26 3300026023 Ga0207677_10043307 Ga0207677_100433073 244
27 3300048912 Ga0496109_0524703 Ga0496109_0524703_58_804 244
28 3300006028 Ga0070717_10204280 Ga0070717_102042803 245
29 3300014969 Ga0157376_10216069 Ga0157376_102160693 245
30 3300026088 Ga0207641_10075161 Ga0207641_100751615 245
31 3300013307 Ga0157372_11152698 Ga0157372_111526982 246
32 3300036401 Ga0373937_0185962 Ga0373937_0185962_994_1746 246
33 3300048088 Ga0495602_0080210 Ga0495602_0080210_111_863 246
34 3300005445 Ga0070708_100661982 Ga0070708_1006619821 247
35 3300005536 Ga0070697_100010366 Ga0070697_1000103662 247
36 3300005548 Ga0070665_100010125 Ga0070665_10001012511 247
37 3300005564 Ga0070664_100202403 Ga0070664_1002024033 247
38 3300005841 Ga0068863_100006619 Ga0068863_1000066194 247
39 3300013296 Ga0157374_10038939 Ga0157374_100389394 247
40 3300025920 Ga0207649_10647119 Ga0207649_106471191 247
41 3300026078 Ga0207702_10046125 Ga0207702_100461251 247
42 3300026088 Ga0207641_10014807 Ga0207641_100148075 247
43 3300005329 Ga0070683_100052287 Ga0070683_1000522874 248
44 3300005364 Ga0070673_100116426 Ga0070673_1001164263 248
45 3300005367 Ga0070667_100020313 Ga0070667_1000203134 248
46 3300005435 Ga0070714_100424055 Ga0070714_1004240552 248
47 3300005435 Ga0070714_100446392 Ga0070714_1004463921 248
48 3300005445 Ga0070708_100065739 Ga0070708_1000657392 248
49 3300005445 Ga0070708_100108447 Ga0070708_1001084471 248
50 3300005466 Ga0070685_10118208 Ga0070685_101182083 248
51 3300005467 Ga0070706_100417651 Ga0070706_1004176512 248
52 3300005548 Ga0070665_100041785 Ga0070665_1000417854 248
53 3300005614 Ga0068856_100002220 Ga0068856_1000022207 248
54 3300005614 Ga0068856_100026364 Ga0068856_1000263647 248
55 3300005842 Ga0068858_100035570 Ga0068858_1000355704 248
56 3300006914 Ga0075436_100222912 Ga0075436_1002229121 248
57 3300009177 Ga0105248_10897936 Ga0105248_108979361 248
58 3300025922 Ga0207646_10049119 Ga0207646_100491192 248
59 3300025925 Ga0207650_10059278 Ga0207650_100592783 248
60 3300025936 Ga0207670_10078894 Ga0207670_100788943 248
61 3300025941 Ga0207711_10128243 Ga0207711_101282433 248
62 3300025944 Ga0207661_10032116 Ga0207661_100321163 248
63 3300025945 Ga0207679_10019557 Ga0207679_100195574 248
64 3300026035 Ga0207703_10052024 Ga0207703_100520244 248
65 3300026078 Ga0207702_10023516 Ga0207702_100235167 248
66 3300026078 Ga0207702_10172504 Ga0207702_101725042 248
67 3300028379 Ga0268266_10004325 Ga0268266_100043255 248
68 3300005445 Ga0070708_100245165 Ga0070708_1002451652 249
69 3300005467 Ga0070706_100105267 Ga0070706_1001052673 249
70 3300005518 Ga0070699_100738957 Ga0070699_1007389571 249
71 3300005536 Ga0070697_100000501 Ga0070697_1000005016 249
72 3300005536 Ga0070697_100144537 Ga0070697_1001445373 249
73 3300005563 Ga0068855_100374783 Ga0068855_1003747832 249
74 3300005578 Ga0068854_100041159 Ga0068854_1000411594 249
75 3300007788 Ga0099795_10032633 Ga0099795_100326331 249
76 3300010375 Ga0105239_10175439 Ga0105239_101754392 249
77 3300013105 Ga0157369_10634852 Ga0157369_106348522 249
78 3300013307 Ga0157372_10136695 Ga0157372_101366952 249
79 3300025910 Ga0207684_10205728 Ga0207684_102057282 249
80 3300025913 Ga0207695_10029441 Ga0207695_100294414 249
81 3300025914 Ga0207671_10076610 Ga0207671_100766101 249
82 3300025924 Ga0207694_10036007 Ga0207694_100360073 249
83 3300025939 Ga0207665_10062223 Ga0207665_100622232 249
84 3300025941 Ga0207711_10176482 Ga0207711_101764822 249
85 3300025949 Ga0207667_10121457 Ga0207667_101214572 249
86 3300025961 Ga0207712_10378473 Ga0207712_103784732 249
87 3300035242 Ga0373962_0032701 Ga0373962_0032701_405_1166 249
88 3300048915 Ga0496112_0200466 Ga0496112_0200466_97_858 249
89 3300005445 Ga0070708_100199995 Ga0070708_1001999952 250
90 3300005467 Ga0070706_100045984 Ga0070706_1000459844 250
91 3300005468 Ga0070707_100019192 Ga0070707_1000191929 250
92 3300006173 Ga0070716_100032217 Ga0070716_1000322172 250
93 3300006914 Ga0075436_100000853 Ga0075436_10000085333 250
94 3300007076 Ga0075435_100295295 Ga0075435_1002952953 250
95 3300013296 Ga0157374_10050333 Ga0157374_100503334 250
96 3300025910 Ga0207684_10050511 Ga0207684_100505114 250
97 3300025922 Ga0207646_10082116 Ga0207646_100821161 250
98 3300025922 Ga0207646_10168315 Ga0207646_101683152 250
99 3300025928 Ga0207700_10160187 Ga0207700_101601873 250
100 3300025929 Ga0207664_10338185 Ga0207664_103381853 250
101 3300025939 Ga0207665_10053398 Ga0207665_100533982 250
102 3300035695 Ga0373927_0051711 Ga0373927_0051711_405_1181 250
103 3300046472 Ga0495580_0002725 Ga0495580_0002725_2929_3705 250
104 3300047673 Ga0495593_0207805 Ga0495593_0207805_41_817 250
105 3300048915 Ga0496112_0118386 Ga0496112_0118386_1484_2248 250
106 3300050513 nmdc:mga0rr50_282957_c1 nmdc:mga0rr50_282957_c1_46_810 250
107 3300050514 nmdc:mga08x19_585_c1 nmdc:mga08x19_585_c1_5291_6055 250
108 3300005435 Ga0070714_100086562 Ga0070714_1000865624 252
109 3300005536 Ga0070697_100021445 Ga0070697_1000214451 252
110 3300005563 Ga0068855_100321814 Ga0068855_1003218142 252
111 3300009093 Ga0105240_10138219 Ga0105240_101382195 252
112 3300013307 Ga0157372_10020137 Ga0157372_100201376 252
113 3300025913 Ga0207695_10104434 Ga0207695_101044344 252
114 3300025929 Ga0207664_10889777 Ga0207664_108897771 252
115 3300013307 Ga0157372_10147646 Ga0157372_101476464 253
116 3300013307 Ga0157372_10283382 Ga0157372_102833823 253
117 3300025913 Ga0207695_10027423 Ga0207695_100274233 253
118 3300025914 Ga0207671_10571387 Ga0207671_105713871 253
119 3300025932 Ga0207690_10334330 Ga0207690_103343301 253
120 3300003323 rootH1_10312272 rootH1_103122722 254
121 3300005328 Ga0070676_10025798 Ga0070676_100257985 254
122 3300005344 Ga0070661_100068360 Ga0070661_1000683604 254
123 3300005435 Ga0070714_100005082 Ga0070714_10000508219 254
124 3300005435 Ga0070714_100182044 Ga0070714_1001820443 254
125 3300005535 Ga0070684_100051695 Ga0070684_1000516954 254
126 3300005548 Ga0070665_100313192 Ga0070665_1003131922 254
127 3300005614 Ga0068856_100337321 Ga0068856_1003373212 254
128 3300005618 Ga0068864_100023451 Ga0068864_1000234515 254
129 3300005841 Ga0068863_100028502 Ga0068863_1000285025 254
130 3300006237 Ga0097621_100366494 Ga0097621_1003664941 254
131 3300006358 Ga0068871_100079739 Ga0068871_1000797392 254
132 3300013307 Ga0157372_10031653 Ga0157372_100316532 254
133 3300025907 Ga0207645_10027987 Ga0207645_100279872 254
134 3300025910 Ga0207684_10470443 Ga0207684_104704432 254
135 3300025915 Ga0207693_10429489 Ga0207693_104294891 254
136 3300025929 Ga0207664_10045185 Ga0207664_100451852 254
137 3300025929 Ga0207664_10110556 Ga0207664_101105563 254
138 3300026035 Ga0207703_10737695 Ga0207703_107376951 254
139 3300026067 Ga0207678_10027779 Ga0207678_100277795 254
140 3300026088 Ga0207641_10022146 Ga0207641_100221464 254
141 3300026095 Ga0207676_10047292 Ga0207676_100472923 254

Structural Annotation

Top 5 Hits

ID Description Score Start End
1di2-assembly1.cif.gz_A crystal structure of a dsrna-binding domain complexed with dsrna: molecular basis of double-stranded rna-protein interactions 0.7485 61 142
6h4a-assembly1.cif.gz_A human malt1(329-728) in complex with mlt-748 0.7441 90 114
5npg-assembly1.cif.gz_A solution structure of drosophila melanogaster loquacious dsrbd1 0.735 64 144
8dfv-assembly1.cif.gz_K structural basis of microrna biogenesis by dicer-1 and its partner protein loqs-pb - complex iia 0.7144 61 142
1di2-assembly1.cif.gz_A crystal structure of a dsrna-binding domain complexed with dsrna: molecular basis of double-stranded rna-protein interactions 0.7048 61 142
ID Description Score Start End Superfamily
af_F1R287_271_403_2.60.40.1470 Mainly Beta;Sandwich;Immunoglobulin-like;ApaG domain 0.8243 75 98 2.60.40.1470
af_O80603_51_399_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.7836 76 112 2.130.10.10
af_Q9LTQ0_311_387_3.30.160.20 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.7618 61 142 3.30.160.20
af_A0A0R0GH56_267_342_3.30.160.20 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.7485 61 142 3.30.160.20
af_Q556V1_54_199_3.30.530.20 Alpha Beta;2-Layer Sandwich;Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4;START domain 0.7442 77 114 3.30.530.20
ID Description Score Start End GO Terms
AF-A0A2V9SUC4-F1-model_v4 Uncharacterized protein 0.9638 79 147
AF-A0A2V9XPC2-F1-model_v4 Uncharacterized protein 0.9584 34 140
AF-A0A2V9SUC4-F1-model_v4 Uncharacterized protein 0.9372 79 147
AF-A0A2U3JXV4-F1-model_v4 Uncharacterized protein 0.9278 174 247
AF-A0A2V9XPC2-F1-model_v4 Uncharacterized protein 0.9162 34 140

Feature Viewer

pLDDT pTM Quality
84.73 0.6 Medium
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Predicted Structure (AlphaFold2)

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