F182163

General Info

Members Datasets Scaffolds Average Seq Length
141 96 141 273

Family's Representative Sequence

Representative Sequence 3300005985|Ga0081539_10026368|Ga0081539_100263683
Length 322
Sequence VKLLNGAELAGYIKERHSRDVRRLKQSGIQPKLAIVQVKDDPAINTYVRLKRQYGSDIGIEVEVYTPTQKSAPEVINKLNADKSVHGIIVQLPLNDPSDTEKIVNLVAPEKDIDALGNPDAPWTPHSSATQGASEQRTETYKASTSKEQPQLATKRSAETVGGVHGFAGQQTNGVRGSWFEPATPMAIMWLLSGYNIDLAGKKILLVGRGKLVGAPLEKILKTAGHKVLVARKGDDLMAMAKESEVIITATSSPGVLTSQMINPGTVVVDAGVAGEEGKTVGDVDPDVYERDDITITPQKGGVGPLTVCALFENVIRAAQVK

Samples

Sample ID Description Type Environment
1 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
2 3300002244 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
9 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
10 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
11 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
26 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
27 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
28 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
29 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
30 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
63 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
66 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
67 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
68 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
69 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
70 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
71 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
72 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
73 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
74 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
75 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
76 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
77 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
80 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
81 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
82 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
83 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
86 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
87 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
88 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
89 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
90 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
91 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
92 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
93 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
94 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
95 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
96 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.18
Nodule 0
Rhizoplane 0
Rhizosphere 82.27
Stem 0
Stem Tuber 0
Unclassified 3.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1008574 3300001904 Bacteria 1697
2 JGI24742J22300_10000007 3300002244 Bacteria 40579
3 rootH1_10167977 3300003316 Bacteria 1892
4 rootH2_10000244 3300003320 Bacteria 697651
5 rootL2_10240212 3300003322 Unclassified 2448
6 rootH1_10289874 3300003323 Bacteria 1586
7 Ga0070658_10000248 3300005327 Bacteria 47854
8 Ga0070676_10006874 3300005328 Bacteria 6092
9 Ga0070683_100180955 3300005329 Bacteria 2001
10 Ga0070690_100003897 3300005330 Bacteria 8230
11 Ga0070670_100011326 3300005331 Bacteria 7622
12 Ga0070680_100002694 3300005336 Bacteria 13171
13 Ga0070680_100006428 3300005336 Bacteria 8930
14 Ga0070660_100000072 3300005339 Bacteria 60251
15 Ga0070660_100002009 3300005339 Bacteria 14025
16 Ga0070669_100308681 3300005353 Bacteria 1274
17 Ga0070669_100450370 3300005353 Bacteria 1061
18 Ga0070659_100293739 3300005366 Bacteria 1354
19 Ga0070667_100000001 3300005367 Bacteria 1108638
20 Ga0070667_100050788 3300005367 Bacteria 3495
21 Ga0070667_100173865 3300005367 Bacteria 1902
22 Ga0070714_100000977 3300005435 Bacteria 20432
23 Ga0070681_10152623 3300005458 Unclassified 2236
24 Ga0070679_100017671 3300005530 Bacteria 6904
25 Ga0070679_100312129 3300005530 Bacteria 1522
26 Ga0070684_100040150 3300005535 Bacteria 4028
27 Ga0070684_100048945 3300005535 Bacteria 3668
28 Ga0068855_100000001 3300005563 Bacteria 818777
29 Ga0068855_100070992 3300005563 Bacteria 4050
30 Ga0068855_100775893 3300005563 Bacteria 1020
31 Ga0068857_100083644 3300005577 Bacteria 2851
32 Ga0068860_100007102 3300005843 Bacteria 11204
33 Ga0068860_100203679 3300005843 Bacteria 1918
34 Ga0081539_10026368 3300005985 Bacteria 3709
35 Ga0075365_10094007 3300006038 Unclassified 2046
36 Ga0075365_10095243 3300006038 Bacteria 2033
37 Ga0075368_10050218 3300006042 Unclassified 1656
38 Ga0075364_10007366 3300006051 Bacteria 6532
39 Ga0075369_10000001 3300006186 Bacteria 299616
40 Ga0075366_10000321 3300006195 Bacteria 21877
41 Ga0075366_10023154 3300006195 Bacteria 3618
42 Ga0097621_100000031 3300006237 Bacteria 70439
43 Ga0068871_100000011 3300006358 Bacteria 105600
44 Ga0105240_10030626 3300009093 Bacteria 6991
45 Ga0105240_10464493 3300009093 Bacteria 1414
46 Ga0105245_10000007 3300009098 Bacteria 312285
47 Ga0105245_10161351 3300009098 Unclassified 2128
48 Ga0105248_10143004 3300009177 Bacteria 2699
49 Ga0105237_10113560 3300009545 Bacteria 2701
50 Ga0105238_10000350 3300009551 Bacteria 49662
51 Ga0105238_10346722 3300009551 Bacteria 1474
52 Ga0105239_10129083 3300010375 Bacteria 2810
53 Ga0157369_10022785 3300013105 Bacteria 6984
54 Ga0157369_10071478 3300013105 Bacteria 3725
55 Ga0157369_10319689 3300013105 Unclassified 1614
56 Ga0157374_10000014 3300013296 Bacteria 396846
57 Ga0157374_10000380 3300013296 Bacteria 40830
58 Ga0157372_10004085 3300013307 Bacteria 15649
59 Ga0157372_10552514 3300013307 Bacteria 1342
60 Ga0163163_10001419 3300014325 Bacteria 20271
61 Ga0163163_10005109 3300014325 Bacteria 11317
62 Ga0207645_10016621 3300025907 Bacteria 4867
63 Ga0207705_10000011 3300025909 Bacteria 517768
64 Ga0207654_10079729 3300025911 Bacteria 1967
65 Ga0207707_10097672 3300025912 Bacteria 2567
66 Ga0207707_10118753 3300025912 Unclassified 2311
67 Ga0207695_10052400 3300025913 Bacteria 4276
68 Ga0207695_10306832 3300025913 Bacteria 1477
69 Ga0207660_10001420 3300025917 Bacteria 16075
70 Ga0207660_10138283 3300025917 Bacteria 1860
71 Ga0207657_10001623 3300025919 Bacteria 24212
72 Ga0207657_10002676 3300025919 Bacteria 19217
73 Ga0207657_10023399 3300025919 Bacteria 5752
74 Ga0207652_10003166 3300025921 Bacteria 13705
75 Ga0207652_10019360 3300025921 Bacteria 5597
76 Ga0207652_10079534 3300025921 Bacteria 2864
77 Ga0207652_10289464 3300025921 Bacteria 1478
78 Ga0207681_10245334 3300025923 Bacteria 1396
79 Ga0207694_10002742 3300025924 Bacteria 14245
80 Ga0207694_10246178 3300025924 Bacteria 1462
81 Ga0207650_10095763 3300025925 Bacteria 2276
82 Ga0207687_10000008 3300025927 Bacteria 497738
83 Ga0207664_10003604 3300025929 Bacteria 10364
84 Ga0207711_10113521 3300025941 Bacteria 2412
85 Ga0207661_10158443 3300025944 Bacteria 1963
86 Ga0207661_10191009 3300025944 Bacteria 1795
87 Ga0207667_10001786 3300025949 Bacteria 27062
88 Ga0207667_10046041 3300025949 Bacteria 4619
89 Ga0207658_10000003 3300025986 Bacteria 1151934
90 Ga0207658_10004132 3300025986 Bacteria 10124
91 Ga0207639_10128516 3300026041 Bacteria 2094
92 Ga0207674_10007972 3300026116 Bacteria 12289
93 Ga0268264_10043386 3300028381 Bacteria 3727
94 Ga0268264_10126582 3300028381 Bacteria 2259
95 Ga0265326_10002535 3300028558 Bacteria 6142
96 Ga0265326_10005333 3300028558 Bacteria 4053
97 Ga0265319_1004058 3300028563 Bacteria 7386
98 Ga0265338_10003575 3300028800 Bacteria 21708
99 Ga0265338_10016749 3300028800 Bacteria 7943
100 Ga0265324_10003016 3300029957 Bacteria 8227
101 Ga0265320_10022393 3300031240 Viruses 3381
102 Ga0265325_10011245 3300031241 Bacteria 5146
103 Ga0265339_10040462 3300031249 Bacteria 2590
104 Ga0265331_10136884 3300031250 Bacteria 1115
105 Ga0265327_10007364 3300031251 Bacteria 8517
106 Ga0265327_10034628 3300031251 Bacteria 2800
107 Ga0265316_10187234 3300031344 Viruses 1539
108 Ga0265314_10028213 3300031711 Bacteria 4188
109 Ga0265342_10063207 3300031712 Bacteria 2176
110 Ga0395899_0042621 3300037312 Bacteria 3387
111 Ga0395899_0102213 3300037312 Bacteria 2068
112 Ga0395900_0000305 3300037418 Bacteria 73205
113 Ga0395900_0074498 3300037418 Bacteria 3489
114 Ga0395898_0002733 3300037466 Bacteria 20347
115 Ga0395898_0091806 3300037466 Bacteria 2921
116 Ga0395905_0070814 3300037471 Bacteria 3268
117 Ga0395905_0126707 3300037471 Bacteria 2401
118 Ga0395901_0028456 3300038443 Bacteria 5746
119 Ga0395901_0098166 3300038443 Bacteria 3071
120 Ga0395901_0233677 3300038443 Bacteria 1919
121 Ga0466967_0365481 3300045976 Bacteria 1399
122 Ga0495649_0000526 3300046694 Bacteria 32534
123 Ga0495672_0000010 3300047320 Bacteria 545038
124 Ga0496125_0119251 3300048928 Bacteria 1887
125 Ga0501034_0000024 3300049571 Bacteria 263735
126 Ga0501046_0000059 3300049580 Bacteria 126801
127 Ga0501073_0022249 3300049589 Bacteria 4568
128 Ga0501080_0094866 3300049742 Bacteria 2771
129 nmdc:mga00v17_1444_c1 3300050491 Bacteria 12443
130 nmdc:mga00v17_248559_c1 3300050491 Unclassified 1153
131 nmdc:mga0yw44_216530_c1 3300050492 Bacteria 1268
132 nmdc:mga0k408_21394_c1 3300050493 Bacteria 3632
133 nmdc:mga0k408_94_c2 3300050493 Bacteria 28166
134 nmdc:mga0sz30_28611_c2 3300050516 Bacteria 1746
135 nmdc:mga0sz30_2_c1 3300050516 Bacteria 626403
136 Ga0500610_0000005 3300053079 Bacteria 135448
137 Ga0500643_000070 3300053087 Bacteria 115371
138 Ga0500644_0001343 3300053088 Bacteria 6594
139 Ga0500583_0010419 3300053092 Bacteria 3449
140 Ga0500594_0000112 3300053118 Bacteria 23825
141 Ga0500655_004860 3300053133 Bacteria 2416

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050491 nmdc:mga00v17_248559_c1 nmdc:mga00v17_248559_c1_468_1133 220
2 3300029957 Ga0265324_10003016 Ga0265324_100030163 248
3 3300047320 Ga0495672_0000010 Ga0495672_0000010_298207_299019 259
4 3300049580 Ga0501046_0000059 Ga0501046_0000059_12759_13550 259
5 3300005435 Ga0070714_100000977 Ga0070714_1000009778 264
6 3300005985 Ga0081539_10026368 Ga0081539_100263683 264
7 3300025929 Ga0207664_10003604 Ga0207664_100036048 264
8 3300013105 Ga0157369_10022785 Ga0157369_1002278513 266
9 3300013105 Ga0157369_10071478 Ga0157369_100714782 266
10 3300049742 Ga0501080_0094866 Ga0501080_0094866_132_932 266
11 3300003323 rootH1_10289874 rootH1_102898741 267
12 3300005330 Ga0070690_100003897 Ga0070690_1000038978 267
13 3300005366 Ga0070659_100293739 Ga0070659_1002937392 267
14 3300005535 Ga0070684_100048945 Ga0070684_1000489453 267
15 3300005563 Ga0068855_100070992 Ga0068855_1000709921 267
16 3300005577 Ga0068857_100083644 Ga0068857_1000836443 267
17 3300009093 Ga0105240_10030626 Ga0105240_100306262 267
18 3300009093 Ga0105240_10464493 Ga0105240_104644932 267
19 3300009545 Ga0105237_10113560 Ga0105237_101135603 267
20 3300009551 Ga0105238_10000350 Ga0105238_1000035052 267
21 3300013307 Ga0157372_10552514 Ga0157372_105525143 267
22 3300025912 Ga0207707_10097672 Ga0207707_100976723 267
23 3300025913 Ga0207695_10052400 Ga0207695_100524003 267
24 3300025913 Ga0207695_10306832 Ga0207695_103068322 267
25 3300025917 Ga0207660_10138283 Ga0207660_101382832 267
26 3300025919 Ga0207657_10023399 Ga0207657_100233993 267
27 3300025921 Ga0207652_10019360 Ga0207652_100193606 267
28 3300025921 Ga0207652_10079534 Ga0207652_100795343 267
29 3300025924 Ga0207694_10002742 Ga0207694_100027422 267
30 3300025944 Ga0207661_10158443 Ga0207661_101584433 267
31 3300025949 Ga0207667_10001786 Ga0207667_1000178637 267
32 3300025949 Ga0207667_10046041 Ga0207667_100460415 267
33 3300026116 Ga0207674_10007972 Ga0207674_100079724 267
34 3300028558 Ga0265326_10002535 Ga0265326_100025353 267
35 3300028558 Ga0265326_10005333 Ga0265326_100053331 267
36 3300028563 Ga0265319_1004058 Ga0265319_10040586 267
37 3300028800 Ga0265338_10003575 Ga0265338_1000357522 267
38 3300031240 Ga0265320_10022393 Ga0265320_100223933 267
39 3300031241 Ga0265325_10011245 Ga0265325_100112453 267
40 3300031249 Ga0265339_10040462 Ga0265339_100404622 267
41 3300031251 Ga0265327_10034628 Ga0265327_100346283 267
42 3300031344 Ga0265316_10187234 Ga0265316_101872342 267
43 3300031711 Ga0265314_10028213 Ga0265314_100282133 267
44 3300031712 Ga0265342_10063207 Ga0265342_100632073 267
45 3300025944 Ga0207661_10191009 Ga0207661_101910091 268
46 3300005353 Ga0070669_100450370 Ga0070669_1004503702 269
47 3300006237 Ga0097621_100000031 Ga0097621_10000003139 269
48 3300006358 Ga0068871_100000011 Ga0068871_10000001130 269
49 3300009098 Ga0105245_10000007 Ga0105245_1000000748 269
50 3300009551 Ga0105238_10346722 Ga0105238_103467222 269
51 3300010375 Ga0105239_10129083 Ga0105239_101290833 269
52 3300013296 Ga0157374_10000014 Ga0157374_1000001448 269
53 3300025923 Ga0207681_10245334 Ga0207681_102453343 269
54 3300025924 Ga0207694_10246178 Ga0207694_102461782 269
55 3300025927 Ga0207687_10000008 Ga0207687_1000000848 269
56 3300049571 Ga0501034_0000024 Ga0501034_0000024_21142_21951 269
57 3300003316 rootH1_10167977 rootH1_101679772 270
58 3300005353 Ga0070669_100308681 Ga0070669_1003086812 270
59 3300005367 Ga0070667_100050788 Ga0070667_1000507883 270
60 3300006038 Ga0075365_10095243 Ga0075365_100952433 270
61 3300006195 Ga0075366_10000321 Ga0075366_100003215 270
62 3300014325 Ga0163163_10001419 Ga0163163_1000141920 270
63 3300025921 Ga0207652_10289464 Ga0207652_102894641 270
64 3300026041 Ga0207639_10128516 Ga0207639_101285163 270
65 3300045976 Ga0466967_0365481 Ga0466967_0365481_559_1371 270
66 3300050493 nmdc:mga0k408_94_c2 nmdc:mga0k408_94_c2_17618_18433 270
67 3300006038 Ga0075365_10094007 Ga0075365_100940073 271
68 3300006195 Ga0075366_10023154 Ga0075366_100231543 271
69 3300013105 Ga0157369_10319689 Ga0157369_103196891 271
70 3300025911 Ga0207654_10079729 Ga0207654_100797293 271
71 3300028800 Ga0265338_10016749 Ga0265338_100167491 271
72 3300031250 Ga0265331_10136884 Ga0265331_101368841 271
73 3300050492 nmdc:mga0yw44_216530_c1 nmdc:mga0yw44_216530_c1_74_889 271
74 3300050493 nmdc:mga0k408_21394_c1 nmdc:mga0k408_21394_c1_1242_2060 271
75 3300053088 Ga0500644_0001343 Ga0500644_0001343_190_1005 271
76 3300053118 Ga0500594_0000112 Ga0500594_0000112_20023_20838 271
77 3300002244 JGI24742J22300_10000007 JGI24742J22300_1000000730 272
78 3300003320 rootH2_10000244 rootH2_10000244733 272
79 3300005328 Ga0070676_10006874 Ga0070676_100068742 272
80 3300005336 Ga0070680_100002694 Ga0070680_10000269417 272
81 3300005339 Ga0070660_100002009 Ga0070660_1000020092 272
82 3300005458 Ga0070681_10152623 Ga0070681_101526232 272
83 3300005530 Ga0070679_100017671 Ga0070679_1000176719 272
84 3300005563 Ga0068855_100000001 Ga0068855_100000001429 272
85 3300005563 Ga0068855_100775893 Ga0068855_1007758932 272
86 3300005843 Ga0068860_100007102 Ga0068860_1000071022 272
87 3300006042 Ga0075368_10050218 Ga0075368_100502182 272
88 3300006051 Ga0075364_10007366 Ga0075364_100073662 272
89 3300006186 Ga0075369_10000001 Ga0075369_10000001252 272
90 3300009098 Ga0105245_10161351 Ga0105245_101613511 272
91 3300009177 Ga0105248_10143004 Ga0105248_101430042 272
92 3300013296 Ga0157374_10000380 Ga0157374_1000038016 272
93 3300013307 Ga0157372_10004085 Ga0157372_100040854 272
94 3300025907 Ga0207645_10016621 Ga0207645_100166216 272
95 3300025912 Ga0207707_10118753 Ga0207707_101187531 272
96 3300025917 Ga0207660_10001420 Ga0207660_1000142017 272
97 3300025919 Ga0207657_10001623 Ga0207657_1000162330 272
98 3300025921 Ga0207652_10003166 Ga0207652_100031664 272
99 3300025941 Ga0207711_10113521 Ga0207711_101135213 272
100 3300025986 Ga0207658_10004132 Ga0207658_100041323 272
101 3300028381 Ga0268264_10126582 Ga0268264_101265822 272
102 3300037312 Ga0395899_0042621 Ga0395899_0042621_1617_2441 272
103 3300037418 Ga0395900_0074498 Ga0395900_0074498_230_1054 272
104 3300037466 Ga0395898_0002733 Ga0395898_0002733_6311_7135 272
105 3300037471 Ga0395905_0070814 Ga0395905_0070814_2422_3246 272
106 3300038443 Ga0395901_0028456 Ga0395901_0028456_1490_2314 272
107 3300046694 Ga0495649_0000526 Ga0495649_0000526_18883_19710 272
108 3300048928 Ga0496125_0119251 Ga0496125_0119251_198_1022 272
109 3300050491 nmdc:mga00v17_1444_c1 nmdc:mga00v17_1444_c1_7353_8186 272
110 3300050516 nmdc:mga0sz30_28611_c2 nmdc:mga0sz30_28611_c2_453_1274 272
111 3300050516 nmdc:mga0sz30_2_c1 nmdc:mga0sz30_2_c1_496561_497397 272
112 3300053079 Ga0500610_0000005 Ga0500610_0000005_110785_111606 272
113 3300053133 Ga0500655_004860 Ga0500655_004860_359_1180 272
114 3300005327 Ga0070658_10000248 Ga0070658_1000024813 273
115 3300005336 Ga0070680_100006428 Ga0070680_1000064288 273
116 3300005339 Ga0070660_100000072 Ga0070660_10000007263 273
117 3300005530 Ga0070679_100312129 Ga0070679_1003121292 273
118 3300025909 Ga0207705_10000011 Ga0207705_1000001139 273
119 3300025919 Ga0207657_10002676 Ga0207657_1000267617 273
120 3300031251 Ga0265327_10007364 Ga0265327_100073643 273
121 3300037418 Ga0395900_0000305 Ga0395900_0000305_2708_3547 273
122 3300037466 Ga0395898_0091806 Ga0395898_0091806_1536_2375 273
123 3300037471 Ga0395905_0126707 Ga0395905_0126707_1135_1974 273
124 3300038443 Ga0395901_0098166 Ga0395901_0098166_831_1670 273
125 3300038443 Ga0395901_0233677 Ga0395901_0233677_552_1391 273
126 3300003322 rootL2_10240212 rootL2_102402122 274
127 3300005331 Ga0070670_100011326 Ga0070670_1000113262 274
128 3300005367 Ga0070667_100000001 Ga0070667_100000001417 274
129 3300005843 Ga0068860_100203679 Ga0068860_1002036792 274
130 3300025925 Ga0207650_10095763 Ga0207650_100957632 274
131 3300025986 Ga0207658_10000003 Ga0207658_10000003959 274
132 3300028381 Ga0268264_10043386 Ga0268264_100433863 274
133 3300005367 Ga0070667_100173865 Ga0070667_1001738652 275
134 3300014325 Ga0163163_10005109 Ga0163163_100051094 275
135 3300037312 Ga0395899_0102213 Ga0395899_0102213_776_1636 279
136 3300005329 Ga0070683_100180955 Ga0070683_1001809551 280
137 3300005535 Ga0070684_100040150 Ga0070684_1000401504 280
138 3300049589 Ga0501073_0022249 Ga0501073_0022249_154_1035 284
139 3300053087 Ga0500643_000070 Ga0500643_000070_38414_39334 284
140 3300053092 Ga0500583_0010419 Ga0500583_0010419_2436_3356 284
141 3300001904 JGI24736J21556_1008574 JGI24736J21556_10085743 293

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00763

THF_DHG_CYH

Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain

4

114

0.96

PF02882

THF_DHG_CYH_C

Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

169

322

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
6kg2-assembly1.cif.gz_B human mthfd2 in complex with compound 18 0.9252 21 287
6de8-assembly1.cif.gz_A crystal structure of bifunctional enzyme fold-methylenetetrahydrofolate dehydrogenase/cyclohydrolase from campylobacter jejuni 0.9231 22 287
6ecq-assembly1.cif.gz_A the human methylenetetrahydrofolate dehydrogenase/cyclohydrolase (fold) complexed with nadp and inhibitor ly345899 0.9225 21 286
7ehv-assembly1.cif.gz_B human mthfd2 in complex with compound 21 and 3 0.9224 21 285
7qei-assembly1.cif.gz_A structure of human mthfd2l in complex with th7299 0.9222 21 287
ID Description Score Start End Superfamily
af_K7KDB4_41_138_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9605 146 233 3.40.50.720
af_A0A0R0F3H3_60_174_3.40.50.10860 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Leucine Dehydrogenase, chain A, domain 1 0.9493 32 140 3.40.50.10860
af_Q54VK0_115_197_3.40.50.10860 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Leucine Dehydrogenase, chain A, domain 1 0.9437 51 129 3.40.50.10860
af_A0A1D6EP44_100_195_3.40.50.10860 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Leucine Dehydrogenase, chain A, domain 1 0.9411 29 118 3.40.50.10860
af_Q0E4G1_111_191_3.40.50.10860 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Leucine Dehydrogenase, chain A, domain 1 0.9371 53 129 3.40.50.10860
ID Description Score Start End GO Terms
AF-A0A4Q0AGM7-F1-model_v4 Bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase 0.9735 22 283 GO:0004477
GO:0004488
GO:0005829
GO:0006164
GO:0009086
GO:0035999
AF-A0A660M8J0-F1-model_v4 Tetrahydrofolate dehydrogenase/cyclohydrolase catalytic domain-containing protein 0.9665 22 160 GO:0004477
GO:0004488
GO:0005829
GO:0006164
GO:0009086
GO:0035999
AF-A0A4Q0AGM7-F1-model_v4 Bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase 0.9662 22 283 GO:0004477
GO:0004488
GO:0005829
GO:0006164
GO:0009086
GO:0035999
AF-A0A533XJQ9-F1-model_v4 Bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC 1.5.1.5, EC 3.5.4.9) 0.9629 23 227 GO:0004477
GO:0004488
GO:0005829
GO:0006164
GO:0009086
GO:0035999
AF-A0A7W4HSS7-F1-model_v4 Bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase 0.962 21 289 GO:0004477
GO:0004488
GO:0005829
GO:0006164
GO:0009086
GO:0035999

Feature Viewer

pLDDT pTM Quality
88.01 0.85 High
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Predicted Structure (AlphaFold2)

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