F179179

General Info

Members Datasets Scaffolds Average Seq Length
140 100 139 269

Family's Representative Sequence

Representative Sequence 3300006358|Ga0068871_100534937|Ga0068871_1005349371
Length 285
Sequence LKKTEAIAGSPNWSGARQNNEELAAQAFSVQSDLFDELYSSDAIIQYKRKRVRDHVNALLAPESNMLELNAGTGEDAVYFANLGHSVHATDISLGMLDKLKMKIQLNGLEKLISSERCSYTALETLQERGPYNMVFSNFAGLNCTEHLDKVLKQLPELLKPGGLITFVILPKFCLWESLLFLKGKWKTAFRRFFGRKGTVSHIEGSYFKCWYYSPSYITSALRESFELVTVEGLCTIVPPSYISNFAGKYPKSFAWLIQQEDRFKSKWPWKFIGDYYIITLKKKE

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
25 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
32 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
42 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
43 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
45 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
62 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
65 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
66 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
67 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
68 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
69 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
70 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
75 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
76 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
77 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
78 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
79 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
80 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
88 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
89 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
90 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
91 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
92 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
93 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
94 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
95 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
96 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
97 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
98 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
99 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
100 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.29
Metatranscriptomes 0
Isolates 0.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.71
Nodule 0
Rhizoplane 0.71
Rhizosphere 81.43
Stem 0
Stem Tuber 0
Unclassified 12.14

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10038820 3300003316 Bacteria 3351
2 rootH1_10072935 3300003316 Bacteria 9881
3 rootH2_10000192 3300003320 Bacteria 217588
4 rootH2_10236213 3300003320 Bacteria 2662
5 rootL2_10061700 3300003322 Bacteria 2374
6 rootL2_10315808 3300003322 Bacteria 1431
7 rootH1_10003442 3300003323 Bacteria 125253
8 rootH1_10022040 3300003323 Bacteria 12049
9 rootH1_10060370 3300003323 Unclassified 1163
10 rootH1_10065935 3300003323 Bacteria 6901
11 rootH1_10088309 3300003323 Unclassified 2117
12 Ga0070658_10000053 3300005327 Bacteria 116207
13 Ga0070680_100000217 3300005336 Bacteria 37953
14 Ga0070682_100000542 3300005337 Bacteria 23403
15 Ga0068868_100082214 3300005338 Unclassified 2583
16 Ga0070660_100507645 3300005339 Bacteria 1003
17 Ga0070691_10000127 3300005341 Bacteria 23281
18 Ga0070673_100193007 3300005364 Bacteria 1750
19 Ga0070659_100239086 3300005366 Bacteria 1502
20 Ga0070662_100000607 3300005457 Bacteria 21886
21 Ga0070681_10033935 3300005458 Bacteria 5123
22 Ga0070707_100538993 3300005468 Bacteria 1129
23 Ga0070698_100078865 3300005471 Bacteria 3291
24 Ga0070699_100224027 3300005518 Bacteria 1676
25 Ga0070679_100036592 3300005530 Bacteria 4871
26 Ga0070679_100439640 3300005530 Unclassified 1249
27 Ga0068853_100007901 3300005539 Bacteria 8530
28 Ga0068853_100129268 3300005539 Bacteria 2260
29 Ga0068853_100695783 3300005539 Bacteria 969
30 Ga0070693_100004989 3300005547 Bacteria 6339
31 Ga0070665_100000010 3300005548 Bacteria 529545
32 Ga0068855_100005369 3300005563 Bacteria 15631
33 Ga0068855_100016205 3300005563 Bacteria 8962
34 Ga0068855_100100633 3300005563 Bacteria 3327
35 Ga0068855_100185459 3300005563 Bacteria 2350
36 Ga0068856_100005350 3300005614 Bacteria 12669
37 Ga0068856_100005746 3300005614 Bacteria 12224
38 Ga0068864_100777200 3300005618 Unclassified 940
39 Ga0068871_100534937 3300006358 Unclassified 1060
40 Ga0075428_100055983 3300006844 Bacteria 4320
41 Ga0075428_100062469 3300006844 Bacteria 4078
42 Ga0075430_100330885 3300006846 Bacteria 1259
43 Ga0105240_10000103 3300009093 Bacteria 172981
44 Ga0105240_10004039 3300009093 Bacteria 22585
45 Ga0105240_10052132 3300009093 Bacteria 5144
46 Ga0111539_10007845 3300009094 Bacteria 13633
47 Ga0111539_10035503 3300009094 Bacteria 6035
48 Ga0114129_10117103 3300009147 Unclassified 3671
49 Ga0105243_10010001 3300009148 Bacteria 7210
50 Ga0105241_10000093 3300009174 Bacteria 67365
51 Ga0105241_10000147 3300009174 Bacteria 50428
52 Ga0105241_10360639 3300009174 Unclassified 1265
53 Ga0105237_10000167 3300009545 Bacteria 92638
54 Ga0105238_10037522 3300009551 Bacteria 4925
55 Ga0105238_10573475 3300009551 Bacteria 1134
56 Ga0105239_10000016 3300010375 Bacteria 293142
57 Ga0105239_10004732 3300010375 Bacteria 16162
58 Ga0105239_10085518 3300010375 Bacteria 3476
59 Ga0157370_10011480 3300013104 Bacteria 9260
60 Ga0157374_10001301 3300013296 Bacteria 21246
61 Ga0157374_10241042 3300013296 Bacteria 1778
62 Ga0157378_10009786 3300013297 Bacteria 8356
63 Ga0157378_10049877 3300013297 Bacteria 3724
64 Ga0163162_10000046 3300013306 Bacteria 126777
65 Ga0157372_10054508 3300013307 Unclassified 4461
66 Ga0157372_10301619 3300013307 Bacteria 1863
67 Ga0157372_10364587 3300013307 Bacteria 1684
68 Ga0157372_10384870 3300013307 Unclassified 1634
69 Ga0157380_10022362 3300014326 Bacteria 4758
70 Ga0157376_10097842 3300014969 Bacteria 2557
71 Ga0209050_1001963 3300025298 Bacteria 19465
72 Ga0207426_1000908 3300025302 Bacteria 29684
73 Ga0207647_10000021 3300025904 Bacteria 121592
74 Ga0207705_10000028 3300025909 Bacteria 240636
75 Ga0207654_10003972 3300025911 Bacteria 7450
76 Ga0207654_10098613 3300025911 Bacteria 1796
77 Ga0207707_10000293 3300025912 Bacteria 53373
78 Ga0207695_10000019 3300025913 Bacteria 732137
79 Ga0207695_10009876 3300025913 Bacteria 11728
80 Ga0207695_10025295 3300025913 Bacteria 6650
81 Ga0207671_10000603 3300025914 Bacteria 47713
82 Ga0207660_10002386 3300025917 Bacteria 12352
83 Ga0207652_10006850 3300025921 Bacteria 9184
84 Ga0207652_10454332 3300025921 Unclassified 1155
85 Ga0207706_10000088 3300025933 Bacteria 94903
86 Ga0207709_10015657 3300025935 Bacteria 4206
87 Ga0207667_10013266 3300025949 Bacteria 9443
88 Ga0207667_10156813 3300025949 Bacteria 2342
89 Ga0207667_10158264 3300025949 Bacteria 2331
90 Ga0207667_10177956 3300025949 Unclassified 2185
91 Ga0207677_10062785 3300026023 Unclassified 2579
92 Ga0207639_10001672 3300026041 Bacteria 14958
93 Ga0207639_10039779 3300026041 Bacteria 3506
94 Ga0207702_10004849 3300026078 Bacteria 11847
95 Ga0207702_10019359 3300026078 Bacteria 5633
96 Ga0207683_10065090 3300026121 Bacteria 3213
97 Ga0209968_1012081 3300027526 Unclassified 1344
98 Ga0207428_10067778 3300027907 Bacteria 2809
99 Ga0268266_10000094 3300028379 Bacteria 190917
100 Ga0268265_10608972 3300028380 Bacteria 1045
101 Ga0307517_10051911 3300028786 Bacteria 4124
102 Ga0265324_10012902 3300029957 Unclassified 3135
103 Ga0307509_10010979 3300031507 Bacteria 11036
104 Ga0307509_10050962 3300031507 Bacteria 4430
105 Ga0307408_100014061 3300031548 Bacteria 5317
106 Ga0307508_10002642 3300031616 Bacteria 18793
107 Ga0307516_10004614 3300031730 Bacteria 16903
108 Ga0395899_0004855 3300037312 Bacteria 10474
109 Ga0395900_0000451 3300037418 Bacteria 58854
110 Ga0395900_0001542 3300037418 Bacteria 27361
111 Ga0395905_0000303 3300037471 Bacteria 71615
112 Ga0395901_0029962 3300038443 Bacteria 5605
113 Ga0451807_0212813 3300041486 Bacteria 1202
114 Ga0439445_0039262 3300042004 Bacteria 1254
115 Ga0495638_0000001 3300046460 Bacteria 1114121
116 Ga0495610_0000026 3300046512 Bacteria 284737
117 Ga0495625_0460647 3300046660 Bacteria 784
118 Ga0501300_000121 3300049523 Bacteria 11443
119 Ga0501032_0014918 3300049569 Bacteria 5498
120 Ga0501033_0012702 3300049570 Bacteria 6422
121 Ga0501034_0025263 3300049571 Bacteria 6046
122 Ga0501036_0014489 3300049572 Bacteria 6568
123 Ga0501037_0006475 3300049573 Bacteria 8563
124 Ga0501038_0042228 3300049574 Bacteria 3972
125 Ga0501039_0049461 3300049575 Bacteria 3250
126 Ga0501236_001080 3300049670 Bacteria 3101
127 Ga0501259_003158 3300049688 Bacteria 2634
128 Ga0501264_000749 3300049761 Bacteria 4307
129 Ga0501044_0004005 3300049823 Bacteria 16506
130 nmdc:mga05p37_146396_c1 3300050507 Unclassified 2892
131 nmdc:mga0qj67_147639_c1 3300050509 Bacteria 1906
132 nmdc:mga08y16_100032_c1 3300050511 Bacteria 3019
133 nmdc:mga08y16_21708_c1 3300050511 Bacteria 6777
134 Ga0500635_0020785 3300053080 Bacteria 2014
135 Ga0500578_0079195 3300053086 Unclassified 2091
136 Ga0500644_0008005 3300053088 Unclassified 2774
137 Ga0500651_0165484 3300053093 Unclassified 1321
138 Ga0500642_0007669 3300053130 Bacteria 3641
139 Ga0500616_0000009 3300053153 Bacteria 779095

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300041486 Ga0451807_0212813 Ga0451807_0212813_458_1147 228
2 3300046660 Ga0495625_0460647 Ga0495625_0460647_13_717 232
3 3300009093 Ga0105240_10000103 Ga0105240_1000010372 234
4 3300009545 Ga0105237_10000167 Ga0105237_1000016726 234
5 3300009551 Ga0105238_10573475 Ga0105238_105734752 234
6 3300010375 Ga0105239_10004732 Ga0105239_100047328 234
7 3300025911 Ga0207654_10098613 Ga0207654_100986132 234
8 3300025913 Ga0207695_10000019 Ga0207695_10000019515 234
9 3300025914 Ga0207671_10000603 Ga0207671_1000060315 234
10 3300005618 Ga0068864_100777200 Ga0068864_1007772002 236
11 3300050511 nmdc:mga08y16_21708_c1 nmdc:mga08y16_21708_c1_5977_6723 241
12 3300005327 Ga0070658_10000053 Ga0070658_1000005391 244
13 3300005563 Ga0068855_100005369 Ga0068855_10000536911 244
14 3300025909 Ga0207705_10000028 Ga0207705_10000028220 244
15 3300025949 Ga0207667_10013266 Ga0207667_100132668 244
16 3300009551 Ga0105238_10037522 Ga0105238_100375223 258
17 3300053086 Ga0500578_0079195 Ga0500578_0079195_567_1343 258
18 3300003323 rootH1_10003442 rootH1_100034429 259
19 3300003323 rootH1_10065935 rootH1_100659352 259
20 3300005614 Ga0068856_100005746 Ga0068856_10000574610 259
21 3300026078 Ga0207702_10019359 Ga0207702_100193594 259
22 3300053080 Ga0500635_0020785 Ga0500635_0020785_801_1622 259
23 3300053130 Ga0500642_0007669 Ga0500642_0007669_274_1095 259
24 3300003316 rootH1_10072935 rootH1_1007293511 260
25 3300003320 rootH2_10000192 rootH2_1000019284 260
26 3300003323 rootH1_10060370 rootH1_100603701 260
27 3300005336 Ga0070680_100000217 Ga0070680_10000021724 260
28 3300005337 Ga0070682_100000542 Ga0070682_10000054212 260
29 3300005338 Ga0068868_100082214 Ga0068868_1000822142 260
30 3300005339 Ga0070660_100507645 Ga0070660_1005076452 260
31 3300005341 Ga0070691_10000127 Ga0070691_100001278 260
32 3300005364 Ga0070673_100193007 Ga0070673_1001930071 260
33 3300005366 Ga0070659_100239086 Ga0070659_1002390862 260
34 3300005457 Ga0070662_100000607 Ga0070662_1000006079 260
35 3300005458 Ga0070681_10033935 Ga0070681_100339352 260
36 3300005468 Ga0070707_100538993 Ga0070707_1005389931 260
37 3300005471 Ga0070698_100078865 Ga0070698_1000788652 260
38 3300005518 Ga0070699_100224027 Ga0070699_1002240272 260
39 3300005530 Ga0070679_100036592 Ga0070679_1000365923 260
40 3300005530 Ga0070679_100439640 Ga0070679_1004396402 260
41 3300005539 Ga0068853_100007901 Ga0068853_1000079017 260
42 3300005539 Ga0068853_100129268 Ga0068853_1001292682 260
43 3300005539 Ga0068853_100695783 Ga0068853_1006957831 260
44 3300005547 Ga0070693_100004989 Ga0070693_1000049895 260
45 3300005548 Ga0070665_100000010 Ga0070665_100000010123 260
46 3300005563 Ga0068855_100016205 Ga0068855_1000162052 260
47 3300005563 Ga0068855_100100633 Ga0068855_1001006333 260
48 3300005563 Ga0068855_100185459 Ga0068855_1001854592 260
49 3300005614 Ga0068856_100005350 Ga0068856_1000053507 260
50 3300006358 Ga0068871_100534937 Ga0068871_1005349371 260
51 3300006844 Ga0075428_100062469 Ga0075428_1000624693 260
52 3300009093 Ga0105240_10004039 Ga0105240_1000403911 260
53 3300009093 Ga0105240_10052132 Ga0105240_100521322 260
54 3300009147 Ga0114129_10117103 Ga0114129_101171033 260
55 3300009148 Ga0105243_10010001 Ga0105243_100100012 260
56 3300009174 Ga0105241_10000093 Ga0105241_1000009345 260
57 3300009174 Ga0105241_10000147 Ga0105241_1000014723 260
58 3300009174 Ga0105241_10360639 Ga0105241_103606391 260
59 3300010375 Ga0105239_10000016 Ga0105239_10000016128 260
60 3300010375 Ga0105239_10085518 Ga0105239_100855183 260
61 3300013104 Ga0157370_10011480 Ga0157370_100114804 260
62 3300013296 Ga0157374_10001301 Ga0157374_100013012 260
63 3300013296 Ga0157374_10241042 Ga0157374_102410421 260
64 3300013297 Ga0157378_10009786 Ga0157378_100097866 260
65 3300013297 Ga0157378_10049877 Ga0157378_100498774 260
66 3300013306 Ga0163162_10000046 Ga0163162_1000004618 260
67 3300013307 Ga0157372_10054508 Ga0157372_100545082 260
68 3300013307 Ga0157372_10301619 Ga0157372_103016192 260
69 3300013307 Ga0157372_10364587 Ga0157372_103645872 260
70 3300013307 Ga0157372_10384870 Ga0157372_103848702 260
71 3300014969 Ga0157376_10097842 Ga0157376_100978422 260
72 3300025302 Ga0207426_1000908 Ga0207426_100090821 260
73 3300025904 Ga0207647_10000021 Ga0207647_1000002163 260
74 3300025911 Ga0207654_10003972 Ga0207654_100039722 260
75 3300025912 Ga0207707_10000293 Ga0207707_1000029332 260
76 3300025913 Ga0207695_10009876 Ga0207695_100098765 260
77 3300025913 Ga0207695_10025295 Ga0207695_100252953 260
78 3300025917 Ga0207660_10002386 Ga0207660_1000238610 260
79 3300025921 Ga0207652_10006850 Ga0207652_100068503 260
80 3300025921 Ga0207652_10454332 Ga0207652_104543322 260
81 3300025933 Ga0207706_10000088 Ga0207706_1000008837 260
82 3300025935 Ga0207709_10015657 Ga0207709_100156572 260
83 3300025949 Ga0207667_10156813 Ga0207667_101568133 260
84 3300025949 Ga0207667_10158264 Ga0207667_101582642 260
85 3300025949 Ga0207667_10177956 Ga0207667_101779562 260
86 3300026023 Ga0207677_10062785 Ga0207677_100627852 260
87 3300026041 Ga0207639_10001672 Ga0207639_1000167210 260
88 3300026041 Ga0207639_10039779 Ga0207639_100397792 260
89 3300026078 Ga0207702_10004849 Ga0207702_100048496 260
90 3300026121 Ga0207683_10065090 Ga0207683_100650903 260
91 3300028379 Ga0268266_10000094 Ga0268266_10000094123 260
92 3300028380 Ga0268265_10608972 Ga0268265_106089722 260
93 3300028786 Ga0307517_10051911 Ga0307517_100519114 260
94 3300029957 Ga0265324_10012902 Ga0265324_100129023 260
95 3300031507 Ga0307509_10010979 Ga0307509_100109797 260
96 3300031507 Ga0307509_10050962 Ga0307509_100509622 260
97 3300031616 Ga0307508_10002642 Ga0307508_100026428 260
98 3300031730 Ga0307516_10004614 Ga0307516_100046148 260
99 3300037312 Ga0395899_0004855 Ga0395899_0004855_235_1056 260
100 3300037418 Ga0395900_0000451 Ga0395900_0000451_3845_4663 260
101 3300037418 Ga0395900_0001542 Ga0395900_0001542_7346_8167 260
102 3300037471 Ga0395905_0000303 Ga0395905_0000303_57435_58256 260
103 3300038443 Ga0395901_0029962 Ga0395901_0029962_89_910 260
104 3300046512 Ga0495610_0000026 Ga0495610_0000026_168878_169708 260
105 3300049569 Ga0501032_0014918 Ga0501032_0014918_3476_4297 260
106 3300049570 Ga0501033_0012702 Ga0501033_0012702_3386_4207 260
107 3300049571 Ga0501034_0025263 Ga0501034_0025263_4176_4997 260
108 3300049572 Ga0501036_0014489 Ga0501036_0014489_2481_3302 260
109 3300049573 Ga0501037_0006475 Ga0501037_0006475_5578_6399 260
110 3300049574 Ga0501038_0042228 Ga0501038_0042228_1519_2340 260
111 3300049575 Ga0501039_0049461 Ga0501039_0049461_1858_2679 260
112 3300049688 Ga0501259_003158 Ga0501259_003158_318_1139 260
113 3300049823 Ga0501044_0004005 Ga0501044_0004005_3375_4196 260
114 3300050507 nmdc:mga05p37_146396_c1 nmdc:mga05p37_146396_c1_1114_1935 260
115 iso_pu_bacteria 8003151029 8003151668 260
116 3300006844 Ga0075428_100055983 Ga0075428_1000559834 264
117 3300006846 Ga0075430_100330885 Ga0075430_1003308852 264
118 3300009094 Ga0111539_10007845 Ga0111539_100078457 264
119 3300009094 Ga0111539_10035503 Ga0111539_100355031 264
120 3300014326 Ga0157380_10022362 Ga0157380_100223623 264
121 3300027526 Ga0209968_1012081 Ga0209968_10120812 264
122 3300027907 Ga0207428_10067778 Ga0207428_100677782 264
123 3300042004 Ga0439445_0039262 Ga0439445_0039262_255_1085 264
124 3300050509 nmdc:mga0qj67_147639_c1 nmdc:mga0qj67_147639_c1_943_1737 264
125 3300050511 nmdc:mga08y16_100032_c1 nmdc:mga08y16_100032_c1_1344_2138 264
126 3300003316 rootH1_10038820 rootH1_100388205 265
127 3300003320 rootH2_10236213 rootH2_102362132 265
128 3300003322 rootL2_10061700 rootL2_100617002 265
129 3300003322 rootL2_10315808 rootL2_103158082 265
130 3300003323 rootH1_10022040 rootH1_100220404 265
131 3300003323 rootH1_10088309 rootH1_100883091 265
132 3300025298 Ga0209050_1001963 Ga0209050_10019631 265
133 3300031548 Ga0307408_100014061 Ga0307408_1000140612 265
134 3300046460 Ga0495638_0000001 Ga0495638_0000001_173986_174783 265
135 3300049523 Ga0501300_000121 Ga0501300_000121_3818_4615 265
136 3300049670 Ga0501236_001080 Ga0501236_001080_941_1744 265
137 3300049761 Ga0501264_000749 Ga0501264_000749_1814_2617 265
138 3300053088 Ga0500644_0008005 Ga0500644_0008005_944_1741 265
139 3300053093 Ga0500651_0165484 Ga0500651_0165484_91_888 265
140 3300053153 Ga0500616_0000009 Ga0500616_0000009_548963_549760 265

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13649

Methyltransf_25

Methyltransferase domain

66

163

0.92

PF13847

Methyltransf_31

Methyltransferase domain

60

189

0.91

PF08241

Methyltransf_11

Methyltransferase domain

67

167

0.91

PF08242

Methyltransf_12

Methyltransferase domain

67

165

0.79

PF13489

Methyltransf_23

Methyltransferase domain

44

231

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
8joz-assembly1.cif.gz_A crystal structure of cmom from e. coli complexed with sinefungin and cellularly expressed trna ser 0.8507 5 263
2avn-assembly1.cif.gz_A crystal structure of a ubiquinone/menaquinone biosynthesis methyltransferase-related protein (tm1389) from thermotoga maritima msb8 at 2.35 a resolution 0.8468 5 265
3cjq-assembly2.cif.gz_D ribosomal protein l11 methyltransferase (prma) in complex with dimethylated ribosomal protein l11 in space group p212121 0.8433 42 263
3cjt-assembly4.cif.gz_G ribosomal protein l11 methyltransferase (prma) in complex with dimethylated ribosomal protein l11 0.8418 42 263
3m70-assembly1.cif.gz_A crystal structure of tehb from haemophilus influenzae 0.8334 33 212
ID Description Score Start End Superfamily
af_P95137_118_295_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8981 35 95 3.40.50.150
5himA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8954 33 149 3.40.50.150
af_K7KE15_1_124_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8923 41 148 3.40.50.150
af_Q8ILX8_228_372_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8799 43 97 3.40.50.150
af_Q80WQ4_26_187_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8605 42 148 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A1T5LED6-F1-model_v4 Methyltransferase domain-containing protein 0.9893 1 265 GO:0008168
GO:0032259
AF-A0A2E4EJC2-F1-model_v4 Methylase 0.9776 4 265 GO:0008168
GO:0032259
AF-A0A316KG04-F1-model_v4 Class I SAM-dependent methyltransferase 0.976 5 265 GO:0008168
GO:0032259
AF-A0A6N7JKW9-F1-model_v4 Methyltransferase domain-containing protein 0.9747 1 265 GO:0008168
GO:0032259
AF-A0A6N7JKW9-F1-model_v4 Methyltransferase domain-containing protein 0.9711 1 265 GO:0008168
GO:0032259

Feature Viewer

pLDDT pTM Quality
92.25 0.91 High
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Predicted Structure (AlphaFold2)

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