F177719

General Info

Members Datasets Scaffolds Average Seq Length
139 90 127 477

Family's Representative Sequence

Representative Sequence 3300049758|Ga0501241_004005|Ga0501241_004005_791_2371
Length 526
Sequence MKHAIRQSDNSLTQDIHINLIPPFVCNNTQQPQFRTIDRTNGRHLYDLSVFLFVFGLAIIFFQSCKGLIEVDPPINNITSANVYSSDLTAADVLTGLYLKMSRENATFNIEGYLSTVFNVTGLSSDELSLFDPEYSSYNYNLYAKNELTAEQAPNFWTNIYTDLFVANSAIEGISESSGLTATVKDQLLGEAKFMRAFYYFYLVNLYGDVPLASTTDYKINQQLGRTPKSAVYEQMIADLKEAQSLLYEEYKGSDAISGVSERVRPNKATAAALLARVYLYQASEENNTWAQAEAEASKVISNGLYDTVPLENVFLHTSKEAIWQLQPVSAGINGNSGEGKLFVLPQLQDMYSNPVYLGKSIVNSFESDDKRKTAWVGTVVYNGTSYSFPNKYKVAQGVDAPSTEYSTIFRLAEQYLIRAEARAHLGNFSGAQEDLNVIRKRAGLPNTTASDQTTLLAAIAQERKVELFTEGGHRWFDLKRTNTADAVLGPIKGATWQSTDQLYPIPSREIAKSPRLQGHQNPGYQ

Samples

Sample ID Description Type Environment
1 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
2 2738541278 Niastella sp. CF465 Isolate Unclassified
3 2818991437 Pedobacter terrae 518 Isolate Unclassified
4 2818991444 Filimonas endophytica 3197 Isolate Unclassified
5 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
6 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
7 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
8 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
9 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
10 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
11 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
12 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
13 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
14 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
15 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
16 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
17 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
18 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
19 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
20 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
21 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
22 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
30 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
34 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
37 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
38 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
39 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
40 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
41 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
42 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
43 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
44 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
45 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
46 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
48 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
50 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
52 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
56 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
57 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
58 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
59 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
60 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
61 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
62 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
63 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
64 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
65 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
66 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
67 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
68 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
69 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
70 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
71 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
72 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
73 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
74 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
77 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
78 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
79 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
80 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
81 3300053089 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 endosphere Metagenome Endosphere
82 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
83 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
84 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
85 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
86 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
87 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
88 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
89 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
90 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.37
Metatranscriptomes 0
Isolates 8.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.9
Nodule 0
Rhizoplane 0
Rhizosphere 55.4
Stem 0
Stem Tuber 0
Unclassified 18.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1002813 3300002773 Bacteria 6283
2 JGI25150J39212_1000001 3300002774 Bacteria 1318726
3 JGI25151J46595_10000005 3300003187 Bacteria 431598
4 JGI25153J46596_10000040 3300003215 Bacteria 165523
5 rootH2_10014301 3300003320 Bacteria 2991
6 rootH2_10140382 3300003320 Bacteria 8051
7 rootL2_10135753 3300003322 Bacteria 5637
8 rootH1_10038449 3300003323 Bacteria 42531
9 rootH1_10089788 3300003323 Bacteria 11705
10 rootH1_10274186 3300003323 Bacteria 5565
11 Ga0055536_1000008 3300003781 Bacteria 335729
12 Ga0055530_10001133 3300003791 Bacteria 20756
13 Ga0065714_10002196 3300005288 Bacteria 65569
14 Ga0065714_10069036 3300005288 Bacteria 4420
15 Ga0068860_100085667 3300005843 Bacteria 2998
16 Ga0105244_10021762 3300009036 Bacteria 3540
17 Ga0105240_10000232 3300009093 Bacteria 110394
18 Ga0105240_10002242 3300009093 Bacteria 31401
19 Ga0105240_10034625 3300009093 Bacteria 6512
20 Ga0114129_10002064 3300009147 Bacteria 27589
21 Ga0105237_10001709 3300009545 Bacteria 28398
22 Ga0105239_10005083 3300010375 Bacteria 15528
23 Ga0105239_10029817 3300010375 Bacteria 5999
24 Ga0157373_10000053 3300013100 Bacteria 104200
25 Ga0157373_10016024 3300013100 Bacteria 5471
26 Ga0157373_10058449 3300013100 Bacteria 2734
27 Ga0157371_10000016 3300013102 Bacteria 330495
28 Ga0157371_10016323 3300013102 Bacteria 5546
29 Ga0157370_10017763 3300013104 Bacteria 7169
30 Ga0157370_10041706 3300013104 Bacteria 4425
31 Ga0157370_10042529 3300013104 Bacteria 4378
32 Ga0157370_10057316 3300013104 Bacteria 3705
33 Ga0157370_10096422 3300013104 Bacteria 2775
34 Ga0157370_10127502 3300013104 Bacteria 2375
35 Ga0157369_10001257 3300013105 Bacteria 31516
36 Ga0157374_10000166 3300013296 Bacteria 61451
37 Ga0163162_10001131 3300013306 Bacteria 24841
38 Ga0163162_10004382 3300013306 Bacteria 13592
39 Ga0157372_10040315 3300013307 Bacteria 5157
40 Ga0182008_10003386 3300014497 Bacteria 9663
41 Ga0182006_1000402 3300015261 Bacteria 35095
42 Ga0182006_1002151 3300015261 Bacteria 10928
43 Ga0182006_1002228 3300015261 Bacteria 10735
44 Ga0182006_1002567 3300015261 Bacteria 9840
45 Ga0182006_1002987 3300015261 Bacteria 8905
46 Ga0182006_1003246 3300015261 Bacteria 8431
47 Ga0182006_1003307 3300015261 Bacteria 8324
48 Ga0182007_10000027 3300015262 Bacteria 167235
49 Ga0182005_1000108 3300015265 Bacteria 60032
50 Ga0163161_10000178 3300017792 Bacteria 58130
51 Ga0163161_10002176 3300017792 Bacteria 14133
52 Ga0209436_100209 3300025208 Bacteria 27087
53 Ga0207425_1000002 3300025245 Bacteria 1362590
54 Ga0209646_1001083 3300025246 Bacteria 8152
55 Ga0209129_1000002 3300025258 Bacteria 1359086
56 Ga0209130_1000876 3300025284 Bacteria 24643
57 Ga0209676_1000042 3300025292 Bacteria 424130
58 Ga0209025_1000004 3300025294 Bacteria 1361782
59 Ga0209564_1000479 3300025295 Bacteria 66470
60 Ga0209758_1000006 3300025297 Bacteria 1359562
61 Ga0209050_1000035 3300025298 Bacteria 424005
62 Ga0207426_1000034 3300025302 Bacteria 454016
63 Ga0207426_1020600 3300025302 Bacteria 2290
64 Ga0207647_10010730 3300025904 Bacteria 6452
65 Ga0207695_10000169 3300025913 Bacteria 192566
66 Ga0207695_10010447 3300025913 Bacteria 11353
67 Ga0268264_10046466 3300028381 Bacteria 3606
68 Ga0307513_10062872 3300031456 Bacteria 3921
69 Ga0307513_10134469 3300031456 Bacteria 2411
70 Ga0307513_10203027 3300031456 Unclassified 1821
71 Ga0307508_10001606 3300031616 Bacteria 25224
72 Ga0307405_10000020 3300031731 Bacteria 156779
73 Ga0395899_0000002 3300037312 Bacteria 1324310
74 Ga0466969_0013177 3300044656 Bacteria 4357
75 Ga0466972_0000028 3300044658 Bacteria 171140
76 Ga0466972_0010248 3300044658 Bacteria 4707
77 Ga0466972_0010419 3300044658 Bacteria 4668
78 Ga0466966_0000335 3300044684 Bacteria 30451
79 Ga0466957_0001148 3300044842 Bacteria 13696
80 Ga0466957_0012897 3300044842 Bacteria 4843
81 Ga0466959_0000291 3300045049 Bacteria 30408
82 Ga0495627_003916 3300046453 Bacteria 6369
83 Ga0495627_009908 3300046453 Bacteria 3488
84 Ga0495606_0055310 3300046507 Bacteria 2567
85 Ga0495610_0003064 3300046512 Bacteria 13358
86 Ga0495637_0009519 3300046520 Bacteria 4734
87 Ga0495633_0000529 3300046558 Bacteria 38115
88 Ga0495668_0000113 3300046616 Bacteria 128428
89 Ga0495686_0000138 3300047472 Bacteria 146224
90 Ga0495686_0000221 3300047472 Bacteria 104637
91 Ga0495686_0000298 3300047472 Bacteria 85528
92 Ga0496116_0006585 3300048919 Bacteria 10516
93 Ga0496117_0002991 3300048920 Bacteria 20358
94 Ga0496122_0008661 3300048925 Bacteria 10917
95 Ga0496122_0015999 3300048925 Bacteria 7132
96 Ga0496122_0026588 3300048925 Bacteria 4981
97 Ga0496123_0009927 3300048926 Bacteria 8493
98 Ga0496123_0015761 3300048926 Bacteria 6177
99 Ga0496123_0023885 3300048926 Bacteria 4667
100 Ga0501070_0144090 3300049586 Bacteria 1967
101 Ga0501225_0001502 3300049705 Bacteria 7315
102 Ga0501241_004005 3300049758 Bacteria 2772
103 Ga0501284_00265 3300050005 Unclassified 2891
104 Ga0501284_00324 3300050005 Bacteria 2546
105 Ga0501284_00364 3300050005 Bacteria 2369
106 Ga0501284_00390 3300050005 Bacteria 2278
107 Ga0501284_00722 3300050005 Unclassified 1703
108 nmdc:mga05p37_5575_c2 3300050507 Bacteria 10270
109 Ga0500578_0000014 3300053086 Bacteria 185676
110 Ga0500578_0000024 3300053086 Bacteria 151503
111 Ga0500578_0000178 3300053086 Bacteria 76527
112 Ga0500581_048541 3300053089 Bacteria 2167
113 Ga0500646_0000189 3300053090 Bacteria 18672
114 Ga0500646_0000753 3300053090 Bacteria 9101
115 Ga0500646_0012793 3300053090 Bacteria 2169
116 Ga0500583_0000077 3300053092 Bacteria 58479
117 Ga0500583_0000175 3300053092 Bacteria 26380
118 Ga0500583_0000187 3300053092 Bacteria 25071
119 Ga0500583_0000196 3300053092 Bacteria 23051
120 Ga0500651_0000985 3300053093 Bacteria 14027
121 Ga0500562_004057 3300053108 Unclassified 3690
122 Ga0500608_004091 3300053122 Bacteria 5587
123 Ga0500588_0001586 3300053146 Bacteria 4378
124 Ga0500588_0001902 3300053146 Bacteria 4099
125 Ga0500604_0001417 3300053151 Bacteria 6691
126 Ga0500634_0043898 3300053161 Bacteria 2421
127 Ga0500636_0060821 3300053177 Bacteria 2205

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044842 Ga0466957_0012897 Ga0466957_0012897_16_1188 373
2 3300013100 Ga0157373_10058449 Ga0157373_100584492 392
3 3300013104 Ga0157370_10041706 Ga0157370_100417062 400
4 3300003320 rootH2_10140382 rootH2_101403822 409
5 3300046453 Ga0495627_003916 Ga0495627_003916_1994_3364 417
6 3300010375 Ga0105239_10029817 Ga0105239_100298173 418
7 3300046507 Ga0495606_0055310 Ga0495606_0055310_311_1762 420
8 3300047472 Ga0495686_0000221 Ga0495686_0000221_33692_35134 420
9 3300044658 Ga0466972_0010248 Ga0466972_0010248_2002_3324 421
10 3300009093 Ga0105240_10000232 Ga0105240_1000023247 423
11 3300053086 Ga0500578_0000024 Ga0500578_0000024_48420_49784 423
12 3300053090 Ga0500646_0000189 Ga0500646_0000189_11240_12736 423
13 3300013104 Ga0157370_10127502 Ga0157370_101275022 424
14 3300025246 Ga0209646_1001083 Ga0209646_10010834 425
15 3300031456 Ga0307513_10134469 Ga0307513_101344692 425
16 3300053177 Ga0500636_0060821 Ga0500636_0060821_90_1463 425
17 3300049705 Ga0501225_0001502 Ga0501225_0001502_14_1351 426
18 3300025208 Ga0209436_100209 Ga0209436_1002094 427
19 3300025284 Ga0209130_1000876 Ga0209130_100087613 427
20 3300025302 Ga0207426_1000034 Ga0207426_100003475 427
21 3300050005 Ga0501284_00265 Ga0501284_00265_238_1707 428
22 3300015261 Ga0182006_1002987 Ga0182006_10029876 429
23 3300048919 Ga0496116_0006585 Ga0496116_0006585_4675_6060 429
24 3300048920 Ga0496117_0002991 Ga0496117_0002991_5096_6481 429
25 3300048925 Ga0496122_0008661 Ga0496122_0008661_2796_4181 429
26 3300048926 Ga0496123_0015761 Ga0496123_0015761_2636_4021 429
27 iso_pu_bacteria 2721755487 2722727151 429
28 iso_pu_bacteria 2904780799 2904784111 429
29 iso_pu_bacteria 2919177583 2919180077 429
30 3300009093 Ga0105240_10002242 Ga0105240_1000224211 430
31 3300013104 Ga0157370_10042529 Ga0157370_100425292 430
32 3300013307 Ga0157372_10040315 Ga0157372_100403152 430
33 3300025913 Ga0207695_10010447 Ga0207695_100104473 430
34 3300031456 Ga0307513_10062872 Ga0307513_100628722 430
35 3300053108 Ga0500562_004057 Ga0500562_004057_1739_3136 432
36 3300015261 Ga0182006_1002151 Ga0182006_10021516 433
37 3300013104 Ga0157370_10057316 Ga0157370_100573162 434
38 3300037312 Ga0395899_0000002 Ga0395899_0000002_210630_212114 434
39 3300048925 Ga0496122_0015999 Ga0496122_0015999_2263_3750 434
40 3300048926 Ga0496123_0023885 Ga0496123_0023885_2951_4438 434
41 3300005288 Ga0065714_10002196 Ga0065714_1000219613 435
42 3300009036 Ga0105244_10021762 Ga0105244_100217622 435
43 3300013100 Ga0157373_10016024 Ga0157373_100160242 435
44 3300013102 Ga0157371_10000016 Ga0157371_10000016189 435
45 3300013105 Ga0157369_10001257 Ga0157369_1000125716 435
46 3300013306 Ga0163162_10001131 Ga0163162_1000113113 435
47 3300015261 Ga0182006_1000402 Ga0182006_100040217 435
48 3300015262 Ga0182007_10000027 Ga0182007_1000002712 435
49 3300017792 Ga0163161_10000178 Ga0163161_100001789 435
50 3300031731 Ga0307405_10000020 Ga0307405_1000002050 435
51 3300046512 Ga0495610_0003064 Ga0495610_0003064_3983_5434 435
52 3300046520 Ga0495637_0009519 Ga0495637_0009519_1227_2678 435
53 iso_pu_bacteria 2818991437 2819548550 435
54 iso_pu_bacteria 2883068021 2883069695 435
55 iso_pu_bacteria 2954016120 2954016390 435
56 3300003322 rootL2_10135753 rootL2_101357532 436
57 3300053092 Ga0500583_0000175 Ga0500583_0000175_16575_18059 436
58 3300013100 Ga0157373_10000053 Ga0157373_1000005362 437
59 3300013306 Ga0163162_10004382 Ga0163162_100043829 437
60 3300003323 rootH1_10089788 rootH1_100897888 438
61 3300025295 Ga0209564_1000479 Ga0209564_100047943 438
62 3300025302 Ga0207426_1020600 Ga0207426_10206002 438
63 3300044656 Ga0466969_0013177 Ga0466969_0013177_795_2273 438
64 3300044684 Ga0466966_0000335 Ga0466966_0000335_7036_8514 438
65 3300045049 Ga0466959_0000291 Ga0466959_0000291_7056_8534 438
66 3300005843 Ga0068860_100085667 Ga0068860_1000856672 439
67 3300010375 Ga0105239_10005083 Ga0105239_100050839 439
68 3300028381 Ga0268264_10046466 Ga0268264_100464662 439
69 3300009545 Ga0105237_10001709 Ga0105237_1000170922 440
70 3300053092 Ga0500583_0000077 Ga0500583_0000077_50570_52099 440
71 3300053146 Ga0500588_0001586 Ga0500588_0001586_1369_2841 442
72 3300053151 Ga0500604_0001417 Ga0500604_0001417_2214_3632 442
73 3300053161 Ga0500634_0043898 Ga0500634_0043898_383_1930 442
74 3300015265 Ga0182005_1000108 Ga0182005_100010830 443
75 3300015261 Ga0182006_1003246 Ga0182006_10032462 444
76 3300046558 Ga0495633_0000529 Ga0495633_0000529_232_1680 445
77 3300003320 rootH2_10014301 rootH2_100143012 446
78 3300053122 Ga0500608_004091 Ga0500608_004091_3385_4857 446
79 3300005288 Ga0065714_10069036 Ga0065714_100690362 447
80 3300013104 Ga0157370_10096422 Ga0157370_100964222 447
81 3300014497 Ga0182008_10003386 Ga0182008_100033866 447
82 3300015261 Ga0182006_1002228 Ga0182006_10022283 447
83 iso_pu_bacteria 2884791551 2884794709 447
84 iso_pu_bacteria 2929239360 2929242197 447
85 3300015261 Ga0182006_1003307 Ga0182006_10033077 448
86 3300017792 Ga0163161_10002176 Ga0163161_100021764 448
87 3300025913 Ga0207695_10000169 Ga0207695_10000169133 448
88 3300046453 Ga0495627_009908 Ga0495627_009908_571_2028 448
89 3300046616 Ga0495668_0000113 Ga0495668_0000113_33823_35286 448
90 3300048925 Ga0496122_0026588 Ga0496122_0026588_2971_4428 448
91 3300048926 Ga0496123_0009927 Ga0496123_0009927_3575_5032 448
92 3300050005 Ga0501284_00324 Ga0501284_00324_147_1631 448
93 3300053086 Ga0500578_0000178 Ga0500578_0000178_24229_25689 448
94 iso_pu_bacteria 2818991444 2819587013 448
95 iso_pu_bacteria 2818991460 2819681242 448
96 3300013102 Ga0157371_10016323 Ga0157371_100163232 449
97 3300031456 Ga0307513_10203027 Ga0307513_102030272 449
98 3300050005 Ga0501284_00722 Ga0501284_00722_195_1634 449
99 3300053093 Ga0500651_0000985 Ga0500651_0000985_6665_8137 449
100 iso_pu_bacteria 2738541278 2738726575 449
101 3300013104 Ga0157370_10017763 Ga0157370_100177632 450
102 3300013296 Ga0157374_10000166 Ga0157374_1000016626 450
103 3300015261 Ga0182006_1002567 Ga0182006_10025675 450
104 3300025904 Ga0207647_10010730 Ga0207647_100107302 450
105 3300050005 Ga0501284_00390 Ga0501284_00390_581_2038 450
106 3300053090 Ga0500646_0000753 Ga0500646_0000753_5151_6692 450
107 3300053092 Ga0500583_0000187 Ga0500583_0000187_693_2189 450
108 3300053146 Ga0500588_0001902 Ga0500588_0001902_1073_2551 450
109 iso_pu_bacteria 2929921140 2929925676 450
110 3300003323 rootH1_10038449 rootH1_100384499 451
111 3300009147 Ga0114129_10002064 Ga0114129_100020642 451
112 3300031616 Ga0307508_10001606 Ga0307508_1000160614 451
113 3300044658 Ga0466972_0010419 Ga0466972_0010419_1200_2687 451
114 3300049586 Ga0501070_0144090 Ga0501070_0144090_50_1486 451
115 3300049758 Ga0501241_004005 Ga0501241_004005_791_2371 451
116 3300050005 Ga0501284_00364 Ga0501284_00364_738_2201 451
117 3300050507 nmdc:mga05p37_5575_c2 nmdc:mga05p37_5575_c2_651_2177 451
118 3300053086 Ga0500578_0000014 Ga0500578_0000014_97789_99270 451
119 3300053089 Ga0500581_048541 Ga0500581_048541_136_1581 451
120 3300053090 Ga0500646_0012793 Ga0500646_0012793_536_2005 451
121 3300047472 Ga0495686_0000138 Ga0495686_0000138_132129_133586 452
122 3300053092 Ga0500583_0000196 Ga0500583_0000196_17711_19231 452
123 3300044658 Ga0466972_0000028 Ga0466972_0000028_81252_82775 453
124 3300044842 Ga0466957_0001148 Ga0466957_0001148_5539_7098 453
125 3300003323 rootH1_10274186 rootH1_102741862 455
126 3300009093 Ga0105240_10034625 Ga0105240_100346252 455
127 3300047472 Ga0495686_0000298 Ga0495686_0000298_67680_69140 455
128 3300003781 Ga0055536_1000008 Ga0055536_100000846 466
129 3300003791 Ga0055530_10001133 Ga0055530_100011333 466
130 3300025292 Ga0209676_1000042 Ga0209676_100004246 466
131 3300025298 Ga0209050_1000035 Ga0209050_100003545 466
132 3300002773 JGI25152J39213_1002813 JGI25152J39213_10028133 469
133 3300002774 JGI25150J39212_1000001 JGI25150J39212_1000001964 469
134 3300003187 JGI25151J46595_10000005 JGI25151J46595_10000005237 469
135 3300003215 JGI25153J46596_10000040 JGI25153J46596_100000406 469
136 3300025245 Ga0207425_1000002 Ga0207425_1000002223 469
137 3300025258 Ga0209129_1000002 Ga0209129_1000002223 469
138 3300025294 Ga0209025_1000004 Ga0209025_1000004966 469
139 3300025297 Ga0209758_1000006 Ga0209758_1000006966 469

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14322

SusD-like_3

Starch-binding associating with outer membrane

70

280

0.84

PF07980

SusD_RagB

SusD family

372

525

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
1a17-assembly1.cif.gz_A tetratricopeptide repeats of protein phosphatase 5 0.8305 107 249
3mcx-assembly1.cif.gz_A crystal structure of susd superfamily protein (bt_2365) from bacteroides thetaiotaomicron vpi-5482 at 1.49 a resolution 0.8088 36 466
3jq1-assembly2.cif.gz_B crystal structure of susd superfamily protein (yp_001297730.1) from bacteroides vulgatus atcc 8482 at 1.55 a resolution 0.8037 34 468
1na3-assembly1.cif.gz_A design of stable alpha-helical arrays from an idealized tpr motif 0.8032 179 250
3jq1-assembly1.cif.gz_A crystal structure of susd superfamily protein (yp_001297730.1) from bacteroides vulgatus atcc 8482 at 1.55 a resolution 0.8011 34 468
ID Description Score Start End Superfamily
af_Q08C84_66_171_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8489 179 246 1.25.40.10
3jq1B01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8363 34 468 1.25.40.390
af_I1L8H9_27_173_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8305 109 252 1.25.40.10
3jq1B01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8284 34 468 1.25.40.390
af_Q4DCN5_245_348_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8281 136 251 1.25.40.10
ID Description Score Start End GO Terms
AF-A0A4U1GHH8-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9208 2 469 GO:0009279
AF-A0A4U1GHH8-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.917 2 469 GO:0009279
AF-A0A191TPC7-F1-model_v4 Carbohydrate-binding protein SusD 0.9158 21 469 GO:0009279
AF-A0A2T5YH25-F1-model_v4 deleted 0.9152 2 469
AF-A0A1I0PSL3-F1-model_v4 Starch-binding associating with outer membrane 0.915 3 468 GO:0009279

Feature Viewer

pLDDT pTM Quality
86.47 0.89 High
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Predicted Structure (AlphaFold2)

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