F177021

General Info

Members Datasets Scaffolds Average Seq Length
139 105 278 407

Family's Representative Sequence

Representative Sequence 3300037418|Ga0395900_0117541|Ga0395900_0117541_870_2180
Length 436
Sequence MRSLSHPVIPEAERVAPRHAAGGTRESMTSVQHHSFVARNRLAARLDAAVRAWPEPLPTPTFVVDLDAFDANAADLVRRAGGTPIRVASKSLRVPALITRALAIDGFAGVLAYTLAEALWLAEHDVSDDIVVAYPSVDRAALAALIASPRAASRIAIMVDDVAHLDLVDSLRASTAVPVRVAIDVDAGLRWGGRAVGPKRSPLYDVGAVTSLARTVIDRPGFQLVGVMTYEGQVAGVPDELPHERARSAIVRKIKQLSIAQLQVRRTAIAEALHALGGLEFWNAGGSGSIESSSADPVVTEVTAGSGLLGPTLFDHYRSFSPVPAAFFGLPVTRRPSAEVATVHGGGLIASGPTGADRAPVPWAPAGLRLTALEGAGEVQTPLVGANAARLAVGDLVWFRHAKSGEPFEHANTVLLAQGASFVEAVPSYRGHGLAF

Samples

Sample ID Description Type Environment
1 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
8 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
9 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
10 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
11 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
12 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
13 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
14 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
15 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
16 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
17 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
18 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
19 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
20 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
21 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
22 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
33 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
34 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
35 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
36 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
37 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
38 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
39 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
40 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
41 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
42 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
43 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
44 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
45 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
46 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
47 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
48 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
49 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
50 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
51 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
52 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
53 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
54 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
55 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
56 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
57 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
58 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
59 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
60 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
61 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
62 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
63 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
64 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
65 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
66 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
67 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
77 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
78 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
79 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
80 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
83 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
84 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
85 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
86 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
87 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
88 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
89 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
90 2643221561 Nocardioides sp. Root151 Isolate Unclassified
91 2643221576 Nocardioides sp. Root614 Isolate Unclassified
92 2643221590 Nocardioides sp. Root682 Isolate Unclassified
93 2643221604 Nocardioides sp. Root190 Isolate Unclassified
94 2643221615 Nocardioides sp. Root224 Isolate Unclassified
95 2643221617 Nocardioides sp. Root79 Isolate Unclassified
96 2643221620 Nocardioides sp. Root240 Isolate Unclassified
97 2643221641 Nocardioides sp. Root122 Isolate Unclassified
98 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
99 2643221696 Nocardioides sp. Root140 Isolate Unclassified
100 2738541305 Nocardioides sp. CF167 Isolate Unclassified
101 2739367898 Nocardioides sp. CF479 Isolate Unclassified
102 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
103 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
104 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
105 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 88.49
Metatranscriptomes 0
Isolates 11.51

Biome Distribution

Category Percentage (%)
Aerial Root 1.44
Bulb 0
Endosphere 9.35
Nodule 0.72
Rhizoplane 12.95
Rhizosphere 65.47
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395900_0117541 3300037418 Bacteria 2728
2 Ga0070658_10045440 3300005327 Bacteria 3552
3 Ga0070682_100058979 3300005337 Bacteria 2422
4 Ga0070682_100131597 3300005337 Bacteria 1694
5 Ga0070659_100020189 3300005366 Bacteria 5058
6 Ga0070667_100003357 3300005367 Bacteria 13656
7 Ga0070714_100053494 3300005435 Bacteria 3446
8 Ga0070665_100161418 3300005548 Bacteria 2243
9 Ga0070664_100062611 3300005564 Bacteria 3172
10 Ga0068862_100004480 3300005844 Bacteria 11773
11 Ga0081455_10004593 3300005937 Bacteria 15418
12 Ga0075368_10020607 3300006042 Bacteria 2498
13 Ga0075363_100047551 3300006048 Bacteria 2279
14 Ga0075364_10025174 3300006051 Bacteria 3786
15 Ga0075370_10005532 3300006353 Bacteria 6294
16 Ga0075370_10030246 3300006353 Bacteria 3020
17 Ga0105237_10161446 3300009545 Bacteria 2239
18 Ga0105249_10003554 3300009553 Bacteria 13484
19 Ga0105249_10055371 3300009553 Bacteria 3628
20 Ga0105239_10072279 3300010375 Bacteria 3791
21 Ga0157372_10141700 3300013307 Bacteria 2770
22 Ga0157375_10032651 3300013308 Bacteria 4938
23 Ga0157380_10000617 3300014326 Bacteria 21924
24 Ga0157379_10106422 3300014968 Bacteria 2518
25 Ga0207647_10002805 3300025904 Bacteria 13135
26 Ga0207705_10102743 3300025909 Bacteria 2104
27 Ga0207657_10157519 3300025919 Bacteria 1846
28 Ga0207664_10052515 3300025929 Bacteria 3224
29 Ga0207690_10091273 3300025932 Bacteria 2153
30 Ga0207679_10048597 3300025945 Bacteria 3090
31 Ga0207712_10010318 3300025961 Bacteria 5930
32 Ga0207658_10000871 3300025986 Bacteria 25155
33 Ga0207675_100208305 3300026118 Bacteria 1880
34 Ga0268265_10003257 3300028380 Bacteria 11777
35 Ga0307410_10008707 3300031852 Bacteria 5644
36 Ga0307412_10181851 3300031911 Bacteria 1582
37 Ga0307409_100061378 3300031995 Bacteria 2937
38 Ga0307409_100179974 3300031995 Bacteria 1870
39 Ga0307409_100183610 3300031995 Bacteria 1854
40 Ga0307416_100001497 3300032002 Bacteria 12724
41 Ga0307416_100086443 3300032002 Bacteria 2673
42 Ga0307416_100143959 3300032002 Bacteria 2172
43 Ga0307411_10003121 3300032005 Bacteria 7593
44 Ga0307415_100015970 3300032126 Bacteria 4460
45 Ga0307415_100017695 3300032126 Bacteria 4279
46 Ga0307415_100102588 3300032126 Bacteria 2102
47 Ga0395898_0159408 3300037466 Bacteria 2158
48 Ga0395901_0109841 3300038443 Bacteria 2895
49 Ga0451843_0653536 3300041509 Bacteria 2025
50 Ga0466972_0012789 3300044658 Bacteria 4215
51 Ga0466972_0026094 3300044658 Bacteria 2894
52 Ga0466965_0016195 3300044683 Bacteria 3544
53 Ga0466965_0027748 3300044683 Bacteria 2749
54 Ga0466966_0123149 3300044684 Bacteria 1592
55 Ga0466961_0086453 3300044693 Bacteria 1982
56 Ga0466961_0107740 3300044693 Bacteria 1754
57 Ga0466963_0058739 3300044694 Bacteria 2565
58 Ga0466964_0095239 3300044706 Bacteria 1302
59 Ga0466971_0019698 3300044719 Bacteria 2998
60 Ga0466968_0010888 3300044735 Bacteria 3534
61 Ga0466968_0039195 3300044735 Bacteria 1994
62 Ga0466970_0020931 3300044765 Bacteria 3404
63 Ga0466970_0035099 3300044765 Bacteria 2657
64 Ga0466970_0037747 3300044765 Bacteria 2562
65 Ga0466970_0045094 3300044765 Bacteria 2347
66 Ga0466970_0136594 3300044765 Bacteria 1349
67 Ga0466957_0029246 3300044842 Bacteria 3284
68 Ga0466957_0030308 3300044842 Bacteria 3229
69 Ga0466960_0018228 3300044901 Bacteria 3073
70 Ga0466960_0018925 3300044901 Bacteria 3025
71 Ga0466967_0100049 3300045976 Bacteria 2649
72 Ga0466967_0190551 3300045976 Bacteria 1938
73 Ga0466967_0394685 3300045976 Bacteria 1345
74 Ga0495641_0048651 3300046461 Bacteria 1944
75 Ga0495657_0082819 3300046675 Bacteria 2072
76 Ga0496102_0097045 3300048905 Bacteria 2733
77 Ga0496102_0208224 3300048905 Bacteria 1844
78 Ga0496104_0142122 3300048907 Bacteria 2306
79 Ga0496105_0002612 3300048908 Bacteria 13107
80 Ga0496105_0017497 3300048908 Bacteria 5749
81 Ga0496106_0065332 3300048909 Bacteria 2770
82 Ga0496107_0037645 3300048910 Bacteria 3471
83 Ga0496108_0147627 3300048911 Bacteria 2028
84 Ga0496109_0006343 3300048912 Bacteria 9960
85 Ga0496109_0062230 3300048912 Bacteria 3412
86 Ga0496110_0283029 3300048913 Bacteria 1510
87 Ga0496112_0381722 3300048915 Bacteria 1350
88 Ga0496113_0069617 3300048916 Bacteria 2673
89 Ga0496114_0015243 3300048917 Bacteria 6178
90 Ga0496114_0076439 3300048917 Bacteria 2821
91 Ga0496114_0261158 3300048917 Bacteria 1525
92 Ga0496115_0002770 3300048918 Bacteria 12597
93 Ga0496115_0084415 3300048918 Bacteria 2589
94 Ga0501031_0031322 3300049568 Bacteria 3470
95 Ga0501033_0136920 3300049570 Bacteria 1772
96 Ga0501034_0010188 3300049571 Bacteria 9807
97 Ga0501036_0004485 3300049572 Bacteria 11287
98 Ga0501037_0008738 3300049573 Bacteria 7425
99 Ga0501038_0005276 3300049574 Bacteria 12019
100 Ga0501039_0015675 3300049575 Bacteria 5799
101 Ga0501042_0053368 3300049578 Bacteria 2884
102 Ga0501046_0036348 3300049580 Bacteria 3964
103 Ga0501067_0017720 3300049583 Bacteria 3943
104 Ga0501067_0041448 3300049583 Bacteria 2557
105 Ga0501067_0119022 3300049583 Bacteria 1469
106 Ga0501071_0014436 3300049587 Bacteria 5402
107 Ga0501071_0069023 3300049587 Bacteria 2573
108 Ga0501073_0030995 3300049589 Bacteria 3817
109 Ga0501073_0041712 3300049589 Bacteria 3242
110 Ga0501076_0073059 3300049592 Bacteria 2746
111 Ga0501035_0029442 3300049822 Bacteria 5007
112 Ga0501044_0102880 3300049823 Bacteria 2871
113 Ga0501045_0016374 3300049824 Bacteria 5264
114 Ga0501045_0098700 3300049824 Bacteria 2161
115 nmdc:mga03683_9692_c2 3300050489 Bacteria 2203
116 nmdc:mga0yw44_53730_c1 3300050492 Bacteria 2447
117 nmdc:mga0yw44_55580_c1 3300050492 Bacteria 2409
118 nmdc:mga06z11_71438_c1 3300050494 Bacteria 1838
119 nmdc:mga07m45_15070_c1 3300050496 Bacteria 4129
120 nmdc:mga07m45_9694_c1 3300050496 Bacteria 5006
121 Ga0495619_0042775 3300053085 Bacteria 2968
122 Ga0500556_0000588 3300053104 Bacteria 23996
123 Ga0500593_000190 3300053117 Bacteria 25004
124 2643823605 2643221561 Bacteria 4984412
125 2643888784 2643221576 Bacteria 5214352
126 2643957839 2643221590 Bacteria 5214697
127 2644034330 2643221604 Bacteria 5014917
128 2644093965 2643221615 Bacteria 5487866
129 2644098606 2643221617 Bacteria 5139111
130 2644114535 2643221620 Bacteria 5134593
131 2644232297 2643221641 Bacteria 4490190
132 2644323809 2643221657 Bacteria 5490246
133 2644535286 2643221696 Bacteria 5431823
134 2738869884 2738541305 Bacteria 4910150
135 2740169283 2739367898 Bacteria 4367674
136 2857485531 2857481737 Bacteria 4761446
137 2984579994 2984576629 Bacteria 4248407
138 2990260775 2990256926 Bacteria 4252839
139 8054613012 8054609563 Bacteria 5170090
140 Ga0395900_0117541
141 Ga0070658_10045440
142 Ga0070682_100058979
143 Ga0070682_100131597
144 Ga0070659_100020189
145 Ga0070667_100003357
146 Ga0070714_100053494
147 Ga0070665_100161418
148 Ga0070664_100062611
149 Ga0068862_100004480
150 Ga0081455_10004593
151 Ga0075368_10020607
152 Ga0075363_100047551
153 Ga0075364_10025174
154 Ga0075370_10005532
155 Ga0075370_10030246
156 Ga0105237_10161446
157 Ga0105249_10003554
158 Ga0105249_10055371
159 Ga0105239_10072279
160 Ga0157372_10141700
161 Ga0157375_10032651
162 Ga0157380_10000617
163 Ga0157379_10106422
164 Ga0207647_10002805
165 Ga0207705_10102743
166 Ga0207657_10157519
167 Ga0207664_10052515
168 Ga0207690_10091273
169 Ga0207679_10048597
170 Ga0207712_10010318
171 Ga0207658_10000871
172 Ga0207675_100208305
173 Ga0268265_10003257
174 Ga0307410_10008707
175 Ga0307412_10181851
176 Ga0307409_100061378
177 Ga0307409_100179974
178 Ga0307409_100183610
179 Ga0307416_100001497
180 Ga0307416_100086443
181 Ga0307416_100143959
182 Ga0307411_10003121
183 Ga0307415_100015970
184 Ga0307415_100017695
185 Ga0307415_100102588
186 Ga0395898_0159408
187 Ga0395901_0109841
188 Ga0451843_0653536
189 Ga0466972_0012789
190 Ga0466972_0026094
191 Ga0466965_0016195
192 Ga0466965_0027748
193 Ga0466966_0123149
194 Ga0466961_0086453
195 Ga0466961_0107740
196 Ga0466963_0058739
197 Ga0466964_0095239
198 Ga0466971_0019698
199 Ga0466968_0010888
200 Ga0466968_0039195
201 Ga0466970_0020931
202 Ga0466970_0035099
203 Ga0466970_0037747
204 Ga0466970_0045094
205 Ga0466970_0136594
206 Ga0466957_0029246
207 Ga0466957_0030308
208 Ga0466960_0018228
209 Ga0466960_0018925
210 Ga0466967_0100049
211 Ga0466967_0190551
212 Ga0466967_0394685
213 Ga0495641_0048651
214 Ga0495657_0082819
215 Ga0496102_0097045
216 Ga0496102_0208224
217 Ga0496104_0142122
218 Ga0496105_0002612
219 Ga0496105_0017497
220 Ga0496106_0065332
221 Ga0496107_0037645
222 Ga0496108_0147627
223 Ga0496109_0006343
224 Ga0496109_0062230
225 Ga0496110_0283029
226 Ga0496112_0381722
227 Ga0496113_0069617
228 Ga0496114_0015243
229 Ga0496114_0076439
230 Ga0496114_0261158
231 Ga0496115_0002770
232 Ga0496115_0084415
233 Ga0501031_0031322
234 Ga0501033_0136920
235 Ga0501034_0010188
236 Ga0501036_0004485
237 Ga0501037_0008738
238 Ga0501038_0005276
239 Ga0501039_0015675
240 Ga0501042_0053368
241 Ga0501046_0036348
242 Ga0501067_0017720
243 Ga0501067_0041448
244 Ga0501067_0119022
245 Ga0501071_0014436
246 Ga0501071_0069023
247 Ga0501073_0030995
248 Ga0501073_0041712
249 Ga0501076_0073059
250 Ga0501035_0029442
251 Ga0501044_0102880
252 Ga0501045_0016374
253 Ga0501045_0098700
254 nmdc:mga03683_9692_c2
255 nmdc:mga0yw44_53730_c1
256 nmdc:mga0yw44_55580_c1
257 nmdc:mga06z11_71438_c1
258 nmdc:mga07m45_15070_c1
259 nmdc:mga07m45_9694_c1
260 Ga0495619_0042775
261 Ga0500556_0000588
262 Ga0500593_000190
263 2643823605
264 2643888784
265 2643957839
266 2644034330
267 2644093965
268 2644098606
269 2644114535
270 2644232297
271 2644323809
272 2644535286
273 2738869884
274 2740169283
275 2857485531
276 2984579994
277 2990260775
278 8054613012

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01168

Ala_racemase_N

Alanine racemase, N-terminal domain

64

312

0.72

Structural Annotation

Top 5 Hits

ID Description Score Start End
7dib-assembly1.cif.gz_A crystal structure of d-threonine aldolase from filomicrobium marinum 0.8893 24 418
6qkb-assembly1.cif.gz_B crystal structure of the beta-hydroxyaspartate aldolase of paracoccus denitrificans 0.8712 29 415
7dib-assembly1.cif.gz_A crystal structure of d-threonine aldolase from filomicrobium marinum 0.8644 24 418
7dib-assembly1.cif.gz_B crystal structure of d-threonine aldolase from filomicrobium marinum 0.8608 28 414
4v15-assembly1.cif.gz_B crystal structure of d-threonine aldolase from alcaligenes xylosoxidans 0.857 28 409
ID Description Score Start End Superfamily
af_O06802_287_414_2.40.37.20 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;D-serine dehydratase-like domain 0.9279 293 418 2.40.37.20
af_O06802_42_286_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.926 37 290 3.20.20.10
af_O06802_42_286_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.915 37 290 3.20.20.10
af_O06802_287_414_2.40.37.20 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;D-serine dehydratase-like domain 0.9071 293 418 2.40.37.20
4v15B02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.8112 37 290 3.20.20.10
ID Description Score Start End GO Terms
AF-A0A4Q2SCB8-F1-model_v4 Amino acid deaminase/aldolase 0.969 2 418 GO:0008721
GO:0036088
AF-A0A4V1TH03-F1-model_v4 deleted 0.9675 12 299
AF-A0A2P9IS71-F1-model_v4 deleted 0.9668 28 319
AF-A0A4Q3XLE4-F1-model_v4 Amino acid deaminase/aldolase 0.9639 47 418 GO:0008721
GO:0036088
AF-A0A3N1PSL6-F1-model_v4 D-serine deaminase-like pyridoxal phosphate-dependent protein 0.9625 10 418 GO:0008721
GO:0036088

Map