F175727

General Info

Members Datasets Scaffolds Average Seq Length
139 80 137 558

Family's Representative Sequence

Representative Sequence 3300005549|Ga0070704_100071097|Ga0070704_1000710972
Length 594
Sequence MKDSNSTSSAQCAGRWVRDPSKRRRMSKQVVYDAIIVGSGATGGWAAKELTQKGLTVAVLEAGRKLDPLKDYTEHTWPYELKFRGFGDRSDLERTQPIQSKCYACNEYGRQFFVNDLENPYTTSPDKPFYWIRSRQVGGRSIPWGRQTYRLSNYDFKAASHDGYGDDWPISYEELAPYYDKVEEFVGISGSYESLPQLPDSKFLPPMSLTCGERVLKKAVDKLGDPHRRVIIGRCAILTKPIHQGTPDARAACHWCGHCDRGCTTKSYYSSPASTLPAAARTGRMTLITHAVVSNIIVDKQTGKAKGLHYVDALTRNHREVLGKVVVLCAGTLESTRIMLNSTSSLYPNGIANSSGALGHYLMDHVGGGGASGSLPMLDAKRLEQDGRANGIYIARFRNLTTKDSRFIRGYGFQGGAGQPLWEHAKGIAGFGSQLKKAVREYHPWGIGISGFGECLARRENHVRLNRDVVDAWGIPVLHIEATFGDNEREMVRDMGVTAGEMLDAAGAKDIRVSYGPTSTPGILIHEVGTARMGDDPKKSVLNKFNQAHEVNNLFVTDGACYVSSGNQNPTLTMMAITARACDYIAEEYRAGRL

Samples

Sample ID Description Type Environment
1 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
29 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
32 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
35 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
36 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
37 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
38 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
39 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
40 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
46 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
59 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300033547 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 Metagenome Unclassified
61 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
62 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
63 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
64 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
65 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
66 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
67 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
68 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
69 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
71 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
72 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
73 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
74 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
75 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
76 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
77 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
78 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
79 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
80 8047673197 Telluria mixta LMG 11547 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.56
Metatranscriptomes 0
Isolates 1.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.72
Rhizosphere 92.81
Stem 0
Stem Tuber 0
Unclassified 6.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10096309 3300003320 Bacteria 3613
2 rootH1_10017389 3300003323 Bacteria 4646
3 Ga0065707_10015977 3300005295 Bacteria 2639
4 Ga0070690_100007796 3300005330 Bacteria 6137
5 Ga0070690_100016561 3300005330 Bacteria 4419
6 Ga0070680_100002602 3300005336 Bacteria 13362
7 Ga0070680_100043394 3300005336 Bacteria 3653
8 Ga0070680_100094605 3300005336 Bacteria 2476
9 Ga0070669_100003335 3300005353 Bacteria 11543
10 Ga0070669_100040964 3300005353 Bacteria 3367
11 Ga0070703_10000191 3300005406 Bacteria 29687
12 Ga0070703_10001418 3300005406 Bacteria 7239
13 Ga0070709_10000031 3300005434 Bacteria 117654
14 Ga0070709_10000082 3300005434 Bacteria 70880
15 Ga0070714_100019018 3300005435 Bacteria 5590
16 Ga0070713_100021380 3300005436 Bacteria 4975
17 Ga0070711_100000024 3300005439 Bacteria 117125
18 Ga0070705_100000103 3300005440 Bacteria 48308
19 Ga0070705_100005252 3300005440 Bacteria 6291
20 Ga0070705_100018856 3300005440 Bacteria 3623
21 Ga0070694_100039765 3300005444 Bacteria 3133
22 Ga0070694_100056057 3300005444 Bacteria 2675
23 Ga0070708_100015134 3300005445 Bacteria 6363
24 Ga0070706_100002739 3300005467 Bacteria 17615
25 Ga0070706_100007124 3300005467 Bacteria 10514
26 Ga0070707_100000133 3300005468 Bacteria 69819
27 Ga0070707_100031139 3300005468 Bacteria 5080
28 Ga0070707_100075560 3300005468 Bacteria 3250
29 Ga0070699_100000008 3300005518 Bacteria 295702
30 Ga0070699_100022146 3300005518 Bacteria 5475
31 Ga0070699_100022953 3300005518 Bacteria 5374
32 Ga0070699_100056245 3300005518 Unclassified 3406
33 Ga0070699_100084656 3300005518 Unclassified 2767
34 Ga0070699_100158933 3300005518 Bacteria 2000
35 Ga0070697_100054976 3300005536 Bacteria 3236
36 Ga0070686_100016209 3300005544 Bacteria 4332
37 Ga0070695_100002670 3300005545 Bacteria 10322
38 Ga0070695_100010093 3300005545 Bacteria 5630
39 Ga0070696_100000879 3300005546 Bacteria 19452
40 Ga0070696_100018808 3300005546 Bacteria 4676
41 Ga0070693_100015148 3300005547 Bacteria 3965
42 Ga0070704_100013899 3300005549 Bacteria 5014
43 Ga0070704_100029277 3300005549 Bacteria 3675
44 Ga0070704_100071097 3300005549 Bacteria 2527
45 Ga0068855_100000018 3300005563 Bacteria 208298
46 Ga0068855_100006859 3300005563 Bacteria 13813
47 Ga0068857_100012618 3300005577 Bacteria 7362
48 Ga0068859_100000446 3300005617 Bacteria 41317
49 Ga0081455_10003803 3300005937 Bacteria 17225
50 Ga0081540_1003132 3300005983 Bacteria 13223
51 Ga0081539_10001995 3300005985 Bacteria 31013
52 Ga0081539_10002014 3300005985 Bacteria 30742
53 Ga0070715_10053716 3300006163 Bacteria 1742
54 Ga0075428_100003770 3300006844 Bacteria 16611
55 Ga0075428_100005240 3300006844 Bacteria 14418
56 Ga0075431_100012061 3300006847 Bacteria 8721
57 Ga0075431_100023526 3300006847 Bacteria 6304
58 Ga0075431_100023833 3300006847 Bacteria 6264
59 Ga0075431_100097215 3300006847 Bacteria 3040
60 Ga0075431_100112754 3300006847 Unclassified 2806
61 Ga0075433_10002497 3300006852 Bacteria 13996
62 Ga0075433_10075638 3300006852 Bacteria 2963
63 Ga0075429_100017511 3300006880 Bacteria 6196
64 Ga0075436_100003403 3300006914 Bacteria 10904
65 Ga0075436_100028210 3300006914 Bacteria 3862
66 Ga0075436_100051365 3300006914 Bacteria 2845
67 Ga0075435_100035655 3300007076 Unclassified 3948
68 Ga0099794_10000059 3300007265 Bacteria 42270
69 Ga0105240_10007808 3300009093 Bacteria 15453
70 Ga0111539_10040644 3300009094 Bacteria 5597
71 Ga0114129_10023659 3300009147 Bacteria 8707
72 Ga0114129_10029173 3300009147 Bacteria 7816
73 Ga0114129_10080943 3300009147 Bacteria 4515
74 Ga0114129_10269963 3300009147 Bacteria 2276
75 Ga0114129_10289471 3300009147 Bacteria 2186
76 Ga0105248_10297301 3300009177 Bacteria 1818
77 Ga0157370_10072484 3300013104 Bacteria 3250
78 Ga0157372_10012778 3300013307 Bacteria 8946
79 Ga0157372_10078943 3300013307 Unclassified 3720
80 Ga0213875_10000004 3300021388 Bacteria 703388
81 Ga0213875_10000024 3300021388 Bacteria 200333
82 Ga0207653_10000067 3300025885 Bacteria 79276
83 Ga0207653_10000226 3300025885 Bacteria 37617
84 Ga0207699_10000012 3300025906 Bacteria 278800
85 Ga0207699_10000082 3300025906 Bacteria 71094
86 Ga0207684_10000752 3300025910 Bacteria 37804
87 Ga0207684_10009221 3300025910 Bacteria 8722
88 Ga0207695_10003650 3300025913 Bacteria 21494
89 Ga0207695_10118476 3300025913 Bacteria 2619
90 Ga0207663_10000012 3300025916 Bacteria 167739
91 Ga0207660_10004909 3300025917 Bacteria 8709
92 Ga0207660_10141222 3300025917 Bacteria 1841
93 Ga0207646_10000281 3300025922 Bacteria 69840
94 Ga0207646_10000572 3300025922 Bacteria 48197
95 Ga0207646_10064531 3300025922 Bacteria 3269
96 Ga0207646_10082342 3300025922 Bacteria 2878
97 Ga0207700_10015149 3300025928 Bacteria 5074
98 Ga0207664_10048901 3300025929 Bacteria 3328
99 Ga0207665_10023637 3300025939 Bacteria 4047
100 Ga0207665_10048673 3300025939 Bacteria 2846
101 Ga0207667_10000164 3300025949 Bacteria 98140
102 Ga0207667_10002681 3300025949 Bacteria 22015
103 Ga0209588_1002283 3300027671 Bacteria 5185
104 Ga0207428_10001369 3300027907 Bacteria 25838
105 Ga0268266_10066039 3300028379 Unclassified 3128
106 Ga0316212_1004316 3300033547 Bacteria 2063
107 Ga0436364_0748068 3300037853 Bacteria 528910
108 Ga0436364_0991316 3300037853 Bacteria 187962
109 Ga0436365_0354328 3300039437 Unclassified 2122
110 Ga0451577_0173290 3300042876 Bacteria 1944
111 Ga0451576_0004763 3300045051 Bacteria 17412
112 Ga0451576_0006273 3300045051 Bacteria 14631
113 Ga0466967_0293428 3300045976 Bacteria 1563
114 Ga0495621_0007628 3300046539 Bacteria 3212
115 Ga0495588_0011605 3300046674 Bacteria 4140
116 Ga0496109_0000086 3300048912 Bacteria 95253
117 Ga0501040_0039435 3300049576 Bacteria 3212
118 Ga0501076_0107323 3300049592 Bacteria 2255
119 nmdc:mga05p37_35936_c1 3300050507 Bacteria 6079
120 nmdc:mga05p37_63_c1 3300050507 Bacteria 93704
121 nmdc:mga05p37_642_c1 3300050507 Bacteria 38709
122 nmdc:mga05p37_9676_c1 3300050507 Bacteria 11426
123 nmdc:mga06r32_101039_c1 3300050510 Bacteria 2830
124 nmdc:mga06r32_126281_c1 3300050510 Bacteria 2527
125 nmdc:mga06r32_18273_c1 3300050510 Bacteria 6416
126 nmdc:mga06r32_2641_c1 3300050510 Bacteria 16009
127 nmdc:mga08y16_36254_c1 3300050511 Bacteria 5179
128 nmdc:mga0n895_49469_c1 3300050512 Bacteria 4119
129 nmdc:mga0rr50_26681_c1 3300050513 Unclassified 4034
130 nmdc:mga0rr50_9122_c1 3300050513 Bacteria 6213
131 nmdc:mga08x19_12725_c1 3300050514 Bacteria 5074
132 nmdc:mga08x19_3025_c1 3300050514 Bacteria 10111
133 nmdc:mga08x19_7_c1 3300050514 Bacteria 437351
134 nmdc:mga0a205_156478_c1 3300050515 Bacteria 2177
135 nmdc:mga0a205_28039_c1 3300050515 Bacteria 5380
136 Ga0501084_0038126 3300054114 Bacteria 4018
137 Ga0530510_0073556 3300061734 Bacteria 2481

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050513 nmdc:mga0rr50_9122_c1 nmdc:mga0rr50_9122_c1_33_1454 467
2 3300061734 Ga0530510_0073556 Ga0530510_0073556_978_2471 478
3 3300050510 nmdc:mga06r32_101039_c1 nmdc:mga06r32_101039_c1_71_1510 479
4 3300045976 Ga0466967_0293428 Ga0466967_0293428_15_1550 505
5 3300005563 Ga0068855_100000018 Ga0068855_100000018106 507
6 3300025949 Ga0207667_10000164 Ga0207667_1000016416 507
7 3300005563 Ga0068855_100006859 Ga0068855_1000068596 529
8 3300025949 Ga0207667_10002681 Ga0207667_100026816 529
9 3300021388 Ga0213875_10000004 Ga0213875_10000004414 532
10 3300037853 Ga0436364_0748068 Ga0436364_0748068_149495_151180 532
11 3300027671 Ga0209588_1002283 Ga0209588_10022834 536
12 3300028379 Ga0268266_10066039 Ga0268266_100660393 539
13 3300005336 Ga0070680_100002602 Ga0070680_10000260217 545
14 3300005406 Ga0070703_10001418 Ga0070703_100014183 545
15 3300005444 Ga0070694_100039765 Ga0070694_1000397653 545
16 3300005444 Ga0070694_100056057 Ga0070694_1000560572 545
17 3300005467 Ga0070706_100007124 Ga0070706_1000071244 545
18 3300005518 Ga0070699_100022953 Ga0070699_1000229531 545
19 3300005545 Ga0070695_100010093 Ga0070695_1000100939 545
20 3300006852 Ga0075433_10075638 Ga0075433_100756383 545
21 3300006914 Ga0075436_100028210 Ga0075436_1000282102 545
22 3300006914 Ga0075436_100051365 Ga0075436_1000513653 545
23 3300025885 Ga0207653_10000067 Ga0207653_1000006769 545
24 3300025910 Ga0207684_10009221 Ga0207684_100092219 545
25 3300025917 Ga0207660_10141222 Ga0207660_101412222 545
26 3300025922 Ga0207646_10082342 Ga0207646_100823423 545
27 3300042876 Ga0451577_0173290 Ga0451577_0173290_174_1832 545
28 3300046674 Ga0495588_0011605 Ga0495588_0011605_409_2118 545
29 3300050512 nmdc:mga0n895_49469_c1 nmdc:mga0n895_49469_c1_307_1965 545
30 3300005336 Ga0070680_100043394 Ga0070680_1000433944 547
31 3300005353 Ga0070669_100040964 Ga0070669_1000409642 547
32 3300005440 Ga0070705_100005252 Ga0070705_1000052524 547
33 3300005445 Ga0070708_100015134 Ga0070708_1000151346 547
34 3300005518 Ga0070699_100022146 Ga0070699_1000221463 547
35 3300005544 Ga0070686_100016209 Ga0070686_1000162096 547
36 3300005545 Ga0070695_100002670 Ga0070695_10000267012 547
37 3300005546 Ga0070696_100018808 Ga0070696_1000188082 547
38 3300005549 Ga0070704_100013899 Ga0070704_1000138993 547
39 3300007265 Ga0099794_10000059 Ga0099794_1000005927 547
40 3300025917 Ga0207660_10004909 Ga0207660_100049092 547
41 3300045051 Ga0451576_0004763 Ga0451576_0004763_1516_3180 547
42 3300045051 Ga0451576_0006273 Ga0451576_0006273_5280_6944 547
43 3300046539 Ga0495621_0007628 Ga0495621_0007628_401_2065 547
44 3300005435 Ga0070714_100019018 Ga0070714_1000190184 548
45 3300005436 Ga0070713_100021380 Ga0070713_1000213803 548
46 3300025928 Ga0207700_10015149 Ga0207700_100151492 548
47 3300025929 Ga0207664_10048901 Ga0207664_100489013 548
48 3300005985 Ga0081539_10002014 Ga0081539_100020143 549
49 iso_pu_bacteria 2524023250 2524612594 549
50 iso_pu_bacteria 8047673197 8047677447 550
51 3300021388 Ga0213875_10000024 Ga0213875_1000002473 552
52 3300037853 Ga0436364_0991316 Ga0436364_0991316_15227_16912 552
53 3300049592 Ga0501076_0107323 Ga0501076_0107323_62_1744 552
54 3300006847 Ga0075431_100097215 Ga0075431_1000972152 553
55 3300007076 Ga0075435_100035655 Ga0075435_1000356553 553
56 3300050513 nmdc:mga0rr50_26681_c1 nmdc:mga0rr50_26681_c1_1857_3542 553
57 3300050514 nmdc:mga08x19_12725_c1 nmdc:mga08x19_12725_c1_2774_4456 553
58 3300050514 nmdc:mga08x19_3025_c1 nmdc:mga08x19_3025_c1_463_2145 553
59 3300005295 Ga0065707_10015977 Ga0065707_100159772 554
60 3300005336 Ga0070680_100094605 Ga0070680_1000946052 554
61 3300005434 Ga0070709_10000082 Ga0070709_1000008250 554
62 3300006844 Ga0075428_100003770 Ga0075428_1000037707 554
63 3300006880 Ga0075429_100017511 Ga0075429_1000175112 554
64 3300009094 Ga0111539_10040644 Ga0111539_100406445 554
65 3300009147 Ga0114129_10029173 Ga0114129_100291734 554
66 3300013104 Ga0157370_10072484 Ga0157370_100724843 554
67 3300025906 Ga0207699_10000082 Ga0207699_100000828 554
68 3300025939 Ga0207665_10023637 Ga0207665_100236372 554
69 3300033547 Ga0316212_1004316 Ga0316212_10043161 554
70 3300049576 Ga0501040_0039435 Ga0501040_0039435_355_2064 554
71 3300050507 nmdc:mga05p37_63_c1 nmdc:mga05p37_63_c1_83945_85633 554
72 3300050515 nmdc:mga0a205_156478_c1 nmdc:mga0a205_156478_c1_315_2003 554
73 3300005440 Ga0070705_100018856 Ga0070705_1000188562 555
74 3300005518 Ga0070699_100158933 Ga0070699_1001589331 555
75 3300005536 Ga0070697_100054976 Ga0070697_1000549762 555
76 3300005577 Ga0068857_100012618 Ga0068857_1000126184 555
77 3300005617 Ga0068859_100000446 Ga0068859_10000044613 555
78 3300003323 rootH1_10017389 rootH1_100173893 556
79 3300005330 Ga0070690_100007796 Ga0070690_1000077962 556
80 3300005434 Ga0070709_10000031 Ga0070709_1000003195 556
81 3300005468 Ga0070707_100075560 Ga0070707_1000755601 556
82 3300005549 Ga0070704_100029277 Ga0070704_1000292773 556
83 3300006844 Ga0075428_100005240 Ga0075428_1000052405 556
84 3300006847 Ga0075431_100012061 Ga0075431_1000120614 556
85 3300009147 Ga0114129_10023659 Ga0114129_100236596 556
86 3300009147 Ga0114129_10289471 Ga0114129_102894711 556
87 3300009177 Ga0105248_10297301 Ga0105248_102973011 556
88 3300025906 Ga0207699_10000012 Ga0207699_1000001214 556
89 3300025922 Ga0207646_10064531 Ga0207646_100645311 556
90 3300050507 nmdc:mga05p37_35936_c1 nmdc:mga05p37_35936_c1_1410_3119 556
91 3300050507 nmdc:mga05p37_642_c1 nmdc:mga05p37_642_c1_4580_6289 556
92 3300050510 nmdc:mga06r32_126281_c1 nmdc:mga06r32_126281_c1_167_1855 556
93 3300050510 nmdc:mga06r32_18273_c1 nmdc:mga06r32_18273_c1_434_2143 556
94 3300005330 Ga0070690_100016561 Ga0070690_1000165611 557
95 3300005406 Ga0070703_10000191 Ga0070703_100001917 557
96 3300005439 Ga0070711_100000024 Ga0070711_10000002486 557
97 3300005440 Ga0070705_100000103 Ga0070705_10000010330 557
98 3300005467 Ga0070706_100002739 Ga0070706_1000027393 557
99 3300005468 Ga0070707_100000133 Ga0070707_10000013337 557
100 3300005518 Ga0070699_100000008 Ga0070699_10000000888 557
101 3300005518 Ga0070699_100056245 Ga0070699_1000562452 557
102 3300005518 Ga0070699_100084656 Ga0070699_1000846562 557
103 3300005546 Ga0070696_100000879 Ga0070696_10000087910 557
104 3300005547 Ga0070693_100015148 Ga0070693_1000151482 557
105 3300006163 Ga0070715_10053716 Ga0070715_100537161 557
106 3300006914 Ga0075436_100003403 Ga0075436_1000034036 557
107 3300025885 Ga0207653_10000226 Ga0207653_100002263 557
108 3300025910 Ga0207684_10000752 Ga0207684_100007523 557
109 3300025916 Ga0207663_10000012 Ga0207663_1000001218 557
110 3300025922 Ga0207646_10000281 Ga0207646_100002814 557
111 3300050514 nmdc:mga08x19_7_c1 nmdc:mga08x19_7_c1_62143_63843 557
112 3300005353 Ga0070669_100003335 Ga0070669_1000033352 558
113 3300005468 Ga0070707_100031139 Ga0070707_1000311393 558
114 3300006847 Ga0075431_100023526 Ga0075431_1000235264 558
115 3300025922 Ga0207646_10000572 Ga0207646_100005724 558
116 3300005549 Ga0070704_100071097 Ga0070704_1000710972 559
117 3300005937 Ga0081455_10003803 Ga0081455_1000380316 559
118 3300005985 Ga0081539_10001995 Ga0081539_100019953 559
119 3300006847 Ga0075431_100023833 Ga0075431_1000238333 559
120 3300006847 Ga0075431_100112754 Ga0075431_1001127542 559
121 3300009093 Ga0105240_10007808 Ga0105240_1000780816 559
122 3300009147 Ga0114129_10080943 Ga0114129_100809434 559
123 3300013307 Ga0157372_10012778 Ga0157372_100127784 559
124 3300013307 Ga0157372_10078943 Ga0157372_100789432 559
125 3300025913 Ga0207695_10003650 Ga0207695_1000365032 559
126 3300025939 Ga0207665_10048673 Ga0207665_100486732 559
127 3300027907 Ga0207428_10001369 Ga0207428_1000136912 559
128 3300048912 Ga0496109_0000086 Ga0496109_0000086_50263_51966 559
129 3300050507 nmdc:mga05p37_9676_c1 nmdc:mga05p37_9676_c1_7448_9151 559
130 3300050510 nmdc:mga06r32_2641_c1 nmdc:mga06r32_2641_c1_13591_15294 559
131 3300050511 nmdc:mga08y16_36254_c1 nmdc:mga08y16_36254_c1_2210_3913 559
132 3300050515 nmdc:mga0a205_28039_c1 nmdc:mga0a205_28039_c1_1915_3618 559
133 3300054114 Ga0501084_0038126 Ga0501084_0038126_1427_3130 559
134 3300006852 Ga0075433_10002497 Ga0075433_100024972 560
135 3300009147 Ga0114129_10269963 Ga0114129_102699632 560
136 3300025913 Ga0207695_10118476 Ga0207695_101184762 560
137 3300039437 Ga0436365_0354328 Ga0436365_0354328_378_2060 560
138 3300003320 rootH2_10096309 rootH2_100963092 563
139 3300005983 Ga0081540_1003132 Ga0081540_10031325 563

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05199

GMC_oxred_C

GMC oxidoreductase

457

578

0.93

PF00732

GMC_oxred_N

GMC oxidoreductase

32

367

0.72

Structural Annotation

Top 5 Hits

ID Description Score Start End
3g5s-assembly1.cif.gz_A crystal structure of thermus thermophilus trmfo in complex with glutathione 0.9754 11 40
2eq7-assembly1.cif.gz_A crystal structure of lipoamide dehydrogenase from thermus thermophilus hb8 with psbdo 0.9607 10 38
2cvj-assembly1.cif.gz_A crystal structure of thioredoxin reductase-related protein ttha0370 from thermus thermophilus hb8 0.9606 10 41
4ntd-assembly1.cif.gz_A-2 crystal structure of hlmi 0.9565 9 41
5ocm-assembly1.cif.gz_A imine reductase from streptosporangium roseum in complex with nadp+ and 2,2,2-trifluoroacetophenone hydrate 0.9562 8 38
ID Description Score Start End Superfamily
af_I6XF25_1_136_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.994 11 40 3.40.50.720
5miqA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9735 9 41 3.50.50.60
4gcmA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9732 10 41 3.50.50.60
af_Q58931_2_109_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.973 10 40 3.50.50.60
af_Q2G041_6_109_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9714 10 41 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A2V9QIX5-F1-model_v4 GMC family oxidoreductase 0.9813 1 563 GO:0016614
GO:0050660
AF-A0A2V9QIX5-F1-model_v4 GMC family oxidoreductase 0.9796 1 563 GO:0016614
GO:0050660
AF-A0A2V9HT36-F1-model_v4 GMC family oxidoreductase 0.9791 1 510 GO:0016614
GO:0050660
AF-A0A2V9JZR0-F1-model_v4 GMC family oxidoreductase 0.9767 1 563 GO:0016614
GO:0050660
AF-A0A3D2AZZ2-F1-model_v4 GMC family oxidoreductase 0.9762 115 563 GO:0016614
GO:0050660

Feature Viewer

pLDDT pTM Quality
91.16 0.92 High
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Predicted Structure (AlphaFold2)

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