F170155

General Info

Members Datasets Scaffolds Average Seq Length
137 113 121 639

Family's Representative Sequence

Representative Sequence 3300028573|Ga0265334_10017288|Ga0265334_100172882
Length 675
Sequence MKRYLSCLAALGLIALCYPLAKVPHLSSKEEVQLAARFAFRRLPLPEVTGHPSYKFVRQVHPSLERISAWVSSLGAAATLADLDGDALPNDLVYVDPRTDLVTVAPVPGTGERYEPFVLDQSGWEGGSFDVSSMAPMGTLVGDFNEDGLMDILVYFWGRTPVLYLRKSVDPGISGLGSRPAEPLEKRLSSNAFVSVELIEPGERWYSTAALQADLDGDGHLDLLIGNYFPDGARVLDRNAAGTEAMQEGEARAHNGGYKHVFLWQGSTGRVAPGVRYREVKNVFKQDVARGWTLAMGAADLDGDLLPELYIANDFGPDRLLHNRSTPGDLHFTLLEGRRDVTTPKSCVLGHDSFKGMGVDFGDVNGDGYLDIYVSNLATRFGLTESHFLWLSTGEIGKMKGGVAPYVNGSEKLGLSRSGFAFEARLVDLDNDGVLEAIQACGFIKGKINRWPELQALGTSNDQVIHNPRFWPTFRPGVDLSGHDCNAFFVRASDGRYYNIASSLGWTEPTVSRGIAVADVDGDGRLDFVTANQWGPSYFFKNESPRPGAFLGLHLIHPNGAPAIGSVARIQLTDGRKFIGQVDGGTGHSGRRSPDIHFGLGAWESTKRLNVEIQWRDDTGKVQRQTVQIEPGWHTIELRRGEAVVRGGSASAMVRRSHQERGLPGMVDPQNPMAP

Samples

Sample ID Description Type Environment
1 2501939600 Micromonospora sp. L5 Isolate Unclassified
2 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
3 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
4 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
5 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
6 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
7 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
8 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
9 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
10 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
11 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
12 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
13 2920107658 Aquisphaera insulae JC669 Isolate Rhizosphere
14 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
15 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
16 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
17 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
18 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
19 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
20 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
21 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
22 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
23 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
24 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
25 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
26 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
27 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
28 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
29 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
30 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
31 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
32 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
33 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
34 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
35 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
36 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
37 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
38 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
39 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
40 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
41 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
42 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
43 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
46 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
50 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
55 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
58 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
59 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
60 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
61 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
62 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
63 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
64 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
65 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
79 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
80 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
81 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
82 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
83 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
84 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
85 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
86 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
87 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
88 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
89 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
90 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
91 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
92 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
93 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
94 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
95 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
96 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
97 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
98 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
99 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
100 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
101 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
102 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
103 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
104 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
105 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
106 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
107 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
108 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
109 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
110 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
111 3300059639 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
112 649633069 Micromonospora sp. L5 Isolate Unclassified
113 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 83.21
Metatranscriptomes 5.11
Isolates 11.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.19
Nodule 0
Rhizoplane 0
Rhizosphere 85.4
Stem 0
Stem Tuber 0
Unclassified 12.41

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10004210 3300003203 Bacteria 6718
2 rootH1_10105387 3300003323 Bacteria 10082
3 Ga0070658_10032966 3300005327 Bacteria 4165
4 Ga0070683_100026484 3300005329 Bacteria 5222
5 Ga0070689_100013757 3300005340 Bacteria 5861
6 Ga0070689_100022556 3300005340 Bacteria 4701
7 Ga0070661_100001973 3300005344 Bacteria 14180
8 Ga0070668_100013163 3300005347 Bacteria 6167
9 Ga0070709_10000072 3300005434 Bacteria 78666
10 Ga0070714_100057809 3300005435 Bacteria 3320
11 Ga0070713_100023679 3300005436 Bacteria 4770
12 Ga0070711_100088923 3300005439 Unclassified 2221
13 Ga0070700_100000003 3300005441 Bacteria 261247
14 Ga0070681_10037517 3300005458 Bacteria 4862
15 Ga0070685_10002076 3300005466 Bacteria 10364
16 Ga0070698_100042260 3300005471 Bacteria 4675
17 Ga0070679_100140390 3300005530 Bacteria 2396
18 Ga0070684_100010170 3300005535 Bacteria 7441
19 Ga0070686_100001621 3300005544 Bacteria 12612
20 Ga0070686_100005976 3300005544 Bacteria 6752
21 Ga0070696_100007983 3300005546 Bacteria 7067
22 Ga0068855_100021129 3300005563 Bacteria 7804
23 Ga0068852_100001908 3300005616 Bacteria 14187
24 Ga0068859_100018894 3300005617 Bacteria 6924
25 Ga0068859_100075027 3300005617 Bacteria 3422
26 Ga0081539_10000197 3300005985 Bacteria 140516
27 Ga0081539_10002078 3300005985 Bacteria 29965
28 Ga0070717_10034806 3300006028 Bacteria 4073
29 Ga0070712_100008449 3300006175 Bacteria 6481
30 Ga0075370_10004771 3300006353 Bacteria 6633
31 Ga0075428_100003555 3300006844 Bacteria 17070
32 Ga0075428_100006387 3300006844 Bacteria 13119
33 Ga0075430_100002677 3300006846 Bacteria 14871
34 Ga0075430_100029266 3300006846 Bacteria 4675
35 Ga0075430_100046444 3300006846 Bacteria 3668
36 Ga0075431_100005737 3300006847 Bacteria 12276
37 Ga0075431_100012499 3300006847 Bacteria 8572
38 Ga0075431_100018642 3300006847 Bacteria 7070
39 Ga0075431_100056427 3300006847 Bacteria 4051
40 Ga0097620_100018895 3300006931 Bacteria 6924
41 Ga0097620_100075028 3300006931 Bacteria 3422
42 Ga0105251_10000794 3300009011 Bacteria 28612
43 Ga0105244_10000867 3300009036 Bacteria 25545
44 Ga0111539_10008801 3300009094 Bacteria 12802
45 Ga0114129_10001052 3300009147 Bacteria 36161
46 Ga0114129_10107227 3300009147 Bacteria 3859
47 Ga0105242_10124727 3300009176 Unclassified 2215
48 Ga0105238_10000300 3300009551 Bacteria 54195
49 Ga0105249_10076140 3300009553 Bacteria 3109
50 Ga0105239_10013961 3300010375 Bacteria 8919
51 Ga0157369_10002573 3300013105 Bacteria 21713
52 Ga0157369_10059519 3300013105 Bacteria 4119
53 Ga0157375_10029378 3300013308 Bacteria 5169
54 Ga0163163_10020581 3300014325 Bacteria 6216
55 Ga0157380_10075108 3300014326 Unclassified 2746
56 Ga0157379_10018903 3300014968 Bacteria 6080
57 Ga0197907_11370912 3300020069 Bacteria 4992
58 Ga0206356_11008430 3300020070 Bacteria 8727
59 Ga0206352_10309862 3300020078 Bacteria 4618
60 Ga0206350_11007485 3300020080 Bacteria 3941
61 Ga0206354_11485463 3300020081 Bacteria 8255
62 Ga0206353_10259268 3300020082 Bacteria 4765
63 Ga0213875_10000117 3300021388 Bacteria 89143
64 Ga0213875_10008033 3300021388 Bacteria 5421
65 Ga0207655_1001176 3300025728 Bacteria 25401
66 Ga0207713_1000375 3300025735 Bacteria 48710
67 Ga0207699_10000076 3300025906 Bacteria 78930
68 Ga0207705_10009930 3300025909 Bacteria 6930
69 Ga0207693_10026296 3300025915 Unclassified 4606
70 Ga0207649_10001892 3300025920 Bacteria 11940
71 Ga0207694_10039189 3300025924 Unclassified 3646
72 Ga0207670_10010029 3300025936 Bacteria 5437
73 Ga0207670_10013202 3300025936 Bacteria 4861
74 Ga0207661_10002557 3300025944 Bacteria 12515
75 Ga0207661_10025483 3300025944 Unclassified 4496
76 Ga0207679_10030858 3300025945 Bacteria 3747
77 Ga0207668_10007895 3300025972 Bacteria 6325
78 Ga0207708_10000002 3300026075 Bacteria 411071
79 Ga0207698_10002152 3300026142 Bacteria 11636
80 Ga0265334_10013863 3300028573 Bacteria 3368
81 Ga0265334_10017288 3300028573 Bacteria 2981
82 Ga0307515_10000827 3300028794 Bacteria 71186
83 Ga0265338_10002810 3300028800 Bacteria 25415
84 Ga0265338_10049575 3300028800 Bacteria 3805
85 Ga0314311_1013962 3300030733 Bacteria 9697
86 Ga0265332_10015335 3300031238 Unclassified 3382
87 Ga0265329_10002883 3300031242 Bacteria 7648
88 Ga0265314_10000034 3300031711 Bacteria 241556
89 Ga0265314_10000173 3300031711 Bacteria 96229
90 Ga0307413_10042828 3300031824 Bacteria 2663
91 Ga0307410_10046835 3300031852 Bacteria 2887
92 Ga0307409_100006873 3300031995 Bacteria 6742
93 Ga0373929_0000001 3300035085 Bacteria 956023
94 Ga0373949_0000570 3300035090 Bacteria 12139
95 Ga0373951_0000202 3300035091 Bacteria 21692
96 Ga0436364_0410618 3300037853 Bacteria 84995
97 Ga0436364_0746786 3300037853 Bacteria 6544
98 Ga0439432_001023 3300042006 Bacteria 10584
99 Ga0466972_0014033 3300044658 Bacteria 4015
100 Ga0466965_0022482 3300044683 Bacteria 3039
101 Ga0466968_0002695 3300044735 Bacteria 6549
102 Ga0466970_0033421 3300044765 Bacteria 2719
103 Ga0466960_0011980 3300044901 Bacteria 3648
104 Ga0495651_0034100 3300046462 Plasmid 3969
105 Ga0496122_0002791 3300048925 Bacteria 24001
106 Ga0496123_0000351 3300048926 Bacteria 86447
107 Ga0496124_0000321 3300048927 Bacteria 88675
108 Ga0501073_0067190 3300049589 Bacteria 2499
109 Ga0501074_0010806 3300049590 Bacteria 6629
110 Ga0501080_0009047 3300049742 Bacteria 9064
111 nmdc:mga05p37_5843_c1 3300050507 Bacteria 14472
112 nmdc:mga09592_2908_c1 3300050508 Bacteria 13885
113 nmdc:mga09592_64_c2 3300050508 Bacteria 55104
114 nmdc:mga0qj67_1888_c1 3300050509 Bacteria 14854
115 nmdc:mga0qj67_93_c2 3300050509 Bacteria 55104
116 nmdc:mga06r32_1742_c1 3300050510 Bacteria 19573
117 nmdc:mga06r32_2313_c1 3300050510 Bacteria 17057
118 nmdc:mga06r32_78_c5 3300050510 Bacteria 9303
119 Ga0500642_0009176 3300053130 Bacteria 3420
120 Ga0500616_0001458 3300053153 Bacteria 22590
121 Ga0587062_000295 3300059639 Bacteria 3211

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044735 Ga0466968_0002695 Ga0466968_0002695_3813_5558 538
2 3300048925 Ga0496122_0002791 Ga0496122_0002791_18695_20551 579
3 3300048926 Ga0496123_0000351 Ga0496123_0000351_18523_20379 579
4 3300048927 Ga0496124_0000321 Ga0496124_0000321_18822_20678 579
5 3300028800 Ga0265338_10049575 Ga0265338_100495753 582
6 3300031995 Ga0307409_100006873 Ga0307409_1000068733 584
7 3300009036 Ga0105244_10000867 Ga0105244_100008679 585
8 3300025728 Ga0207655_1001176 Ga0207655_10011769 585
9 3300031852 Ga0307410_10046835 Ga0307410_100468352 586
10 3300035090 Ga0373949_0000570 Ga0373949_0000570_3105_4943 587
11 3300025735 Ga0207713_1000375 Ga0207713_100037541 591
12 iso_pu_bacteria 2501939600 2501942606 591
13 3300006846 Ga0075430_100002677 Ga0075430_1000026779 593
14 3300006847 Ga0075431_100005737 Ga0075431_1000057377 593
15 3300009553 Ga0105249_10076140 Ga0105249_100761402 593
16 3300050508 nmdc:mga09592_2908_c1 nmdc:mga09592_2908_c1_9337_11265 593
17 3300050509 nmdc:mga0qj67_1888_c1 nmdc:mga0qj67_1888_c1_6300_8228 593
18 3300050510 nmdc:mga06r32_2313_c1 nmdc:mga06r32_2313_c1_6270_8198 593
19 3300021388 Ga0213875_10000117 Ga0213875_1000011729 594
20 3300037853 Ga0436364_0410618 Ga0436364_0410618_56225_58135 594
21 3300003323 rootH1_10105387 rootH1_101053877 595
22 3300005546 Ga0070696_100007983 Ga0070696_1000079833 595
23 3300053130 Ga0500642_0009176 Ga0500642_0009176_1301_3196 595
24 3300009011 Ga0105251_10000794 Ga0105251_1000079413 596
25 3300042006 Ga0439432_001023 Ga0439432_001023_2545_4458 596
26 3300035085 Ga0373929_0000001 Ga0373929_0000001_548637_550574 598
27 iso_pu_bacteria 2856858025 2856862229 598
28 iso_pu_bacteria 649633069 649815977 598
29 3300044765 Ga0466970_0033421 Ga0466970_0033421_238_2136 600
30 3300030733 Ga0314311_1013962 Ga0314311_10139623 601
31 3300005466 Ga0070685_10002076 Ga0070685_100020768 602
32 3300049589 Ga0501073_0067190 Ga0501073_0067190_306_2210 603
33 3300049590 Ga0501074_0010806 Ga0501074_0010806_2360_4264 603
34 3300049742 Ga0501080_0009047 Ga0501080_0009047_324_2228 603
35 3300006353 Ga0075370_10004771 Ga0075370_100047716 604
36 3300013308 Ga0157375_10029378 Ga0157375_100293783 604
37 3300005340 Ga0070689_100022556 Ga0070689_1000225562 606
38 3300025936 Ga0207670_10013202 Ga0207670_100132023 606
39 3300053153 Ga0500616_0001458 Ga0500616_0001458_19593_21530 606
40 3300021388 Ga0213875_10008033 Ga0213875_100080334 607
41 3300037853 Ga0436364_0746786 Ga0436364_0746786_1946_3886 607
42 iso_pu_bacteria 2675903060 2676493753 607
43 3300005985 Ga0081539_10002078 Ga0081539_1000207815 608
44 iso_pu_bacteria 2899359706 2899369546 608
45 iso_pu_bacteria 3002998708 3003007075 608
46 iso_pu_bacteria 2751185734 2753076654 609
47 iso_pu_bacteria 2870721527 2870725244 609
48 iso_pu_bacteria 8003856774 8003861550 609
49 3300005544 Ga0070686_100001621 Ga0070686_1000016217 611
50 3300005563 Ga0068855_100021129 Ga0068855_1000211293 611
51 3300005471 Ga0070698_100042260 Ga0070698_1000422603 612
52 3300005530 Ga0070679_100140390 Ga0070679_1001403901 612
53 3300028794 Ga0307515_10000827 Ga0307515_100008273 612
54 3300005340 Ga0070689_100013757 Ga0070689_1000137572 613
55 3300005544 Ga0070686_100005976 Ga0070686_1000059765 613
56 3300005617 Ga0068859_100075027 Ga0068859_1000750272 613
57 3300006844 Ga0075428_100006387 Ga0075428_1000063874 613
58 3300006847 Ga0075431_100012499 Ga0075431_1000124993 613
59 3300006931 Ga0097620_100075028 Ga0097620_1000750282 613
60 3300009094 Ga0111539_10008801 Ga0111539_100088016 613
61 3300025936 Ga0207670_10010029 Ga0207670_100100293 613
62 3300028573 Ga0265334_10013863 Ga0265334_100138632 613
63 3300028573 Ga0265334_10017288 Ga0265334_100172882 613
64 3300031238 Ga0265332_10015335 Ga0265332_100153352 613
65 3300031242 Ga0265329_10002883 Ga0265329_100028832 613
66 3300031711 Ga0265314_10000173 Ga0265314_1000017344 613
67 3300005327 Ga0070658_10032966 Ga0070658_100329663 614
68 3300005329 Ga0070683_100026484 Ga0070683_1000264843 614
69 3300005344 Ga0070661_100001973 Ga0070661_10000197311 614
70 3300005458 Ga0070681_10037517 Ga0070681_100375172 614
71 3300005535 Ga0070684_100010170 Ga0070684_1000101705 614
72 3300013105 Ga0157369_10002573 Ga0157369_100025739 614
73 3300020069 Ga0197907_11370912 Ga0197907_113709122 614
74 3300020070 Ga0206356_11008430 Ga0206356_110084303 614
75 3300020078 Ga0206352_10309862 Ga0206352_103098622 614
76 3300020080 Ga0206350_11007485 Ga0206350_110074852 614
77 3300020081 Ga0206354_11485463 Ga0206354_114854634 614
78 3300020082 Ga0206353_10259268 Ga0206353_102592682 614
79 3300025909 Ga0207705_10009930 Ga0207705_100099303 614
80 3300025915 Ga0207693_10026296 Ga0207693_100262964 614
81 3300025920 Ga0207649_10001892 Ga0207649_100018923 614
82 3300025944 Ga0207661_10002557 Ga0207661_100025572 614
83 3300025944 Ga0207661_10025483 Ga0207661_100254832 614
84 3300025945 Ga0207679_10030858 Ga0207679_100308581 614
85 3300050510 nmdc:mga06r32_78_c5 nmdc:mga06r32_78_c5_1433_3331 614
86 3300005435 Ga0070714_100057809 Ga0070714_1000578092 615
87 3300005436 Ga0070713_100023679 Ga0070713_1000236792 615
88 3300005439 Ga0070711_100088923 Ga0070711_1000889232 615
89 3300005441 Ga0070700_100000003 Ga0070700_10000000324 615
90 3300006028 Ga0070717_10034806 Ga0070717_100348063 615
91 3300006175 Ga0070712_100008449 Ga0070712_1000084492 615
92 3300013105 Ga0157369_10059519 Ga0157369_100595193 615
93 3300026075 Ga0207708_10000002 Ga0207708_10000002164 615
94 3300006847 Ga0075431_100018642 Ga0075431_1000186424 616
95 3300035091 Ga0373951_0000202 Ga0373951_0000202_6501_8411 616
96 3300005617 Ga0068859_100018894 Ga0068859_1000188944 617
97 3300006844 Ga0075428_100003555 Ga0075428_1000035553 617
98 3300006846 Ga0075430_100029266 Ga0075430_1000292664 617
99 3300006847 Ga0075431_100056427 Ga0075431_1000564273 617
100 3300006931 Ga0097620_100018895 Ga0097620_1000188954 617
101 3300009147 Ga0114129_10001052 Ga0114129_1000105210 617
102 3300014326 Ga0157380_10075108 Ga0157380_100751082 617
103 3300044658 Ga0466972_0014033 Ga0466972_0014033_1387_3336 617
104 3300044683 Ga0466965_0022482 Ga0466965_0022482_460_2409 617
105 3300046462 Ga0495651_0034100 Ga0495651_0034100_1004_2965 617
106 3300050507 nmdc:mga05p37_5843_c1 nmdc:mga05p37_5843_c1_12146_14053 617
107 3300050508 nmdc:mga09592_64_c2 nmdc:mga09592_64_c2_39971_41878 617
108 3300050509 nmdc:mga0qj67_93_c2 nmdc:mga0qj67_93_c2_39971_41878 617
109 3300050510 nmdc:mga06r32_1742_c1 nmdc:mga06r32_1742_c1_4440_6347 617
110 iso_pu_bacteria 2920107658 2920109879 617
111 3300005616 Ga0068852_100001908 Ga0068852_1000019083 618
112 3300009176 Ga0105242_10124727 Ga0105242_101247271 618
113 3300026142 Ga0207698_10002152 Ga0207698_100021527 618
114 3300014325 Ga0163163_10020581 Ga0163163_100205818 619
115 3300028800 Ga0265338_10002810 Ga0265338_1000281010 619
116 3300005347 Ga0070668_100013163 Ga0070668_1000131634 620
117 3300025972 Ga0207668_10007895 Ga0207668_100078954 620
118 3300059639 Ga0587062_000295 Ga0587062_000295_233_2206 620
119 3300009551 Ga0105238_10000300 Ga0105238_1000030019 621
120 3300014968 Ga0157379_10018903 Ga0157379_100189032 621
121 3300025924 Ga0207694_10039189 Ga0207694_100391891 621
122 3300010375 Ga0105239_10013961 Ga0105239_100139619 622
123 3300031711 Ga0265314_10000034 Ga0265314_1000003412 622
124 3300005434 Ga0070709_10000072 Ga0070709_1000007227 623
125 3300025906 Ga0207699_10000076 Ga0207699_1000007635 623
126 iso_pu_bacteria 2551306166 2552108010 624
127 3300009147 Ga0114129_10107227 Ga0114129_101072272 625
128 iso_pu_bacteria 2832004796 2832009073 631
129 iso_pu_bacteria 2866065130 2866069808 631
130 iso_pu_bacteria 2515154088 2515496540 632
131 iso_pu_bacteria 2515154137 2515757588 632
132 iso_pu_bacteria 2515154203 2516091655 632
133 3300006846 Ga0075430_100046444 Ga0075430_1000464442 635
134 3300003203 JGI25406J46586_10004210 JGI25406J46586_100042103 639
135 3300005985 Ga0081539_10000197 Ga0081539_1000019741 639
136 3300031824 Ga0307413_10042828 Ga0307413_100428282 639
137 3300044901 Ga0466960_0011980 Ga0466960_0011980_1348_3318 639

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07593

UnbV_ASPIC

ASPIC and UnbV

563

630

0.81

PF13517

FG-GAP_3

FG-GAP-like repeat

300

374

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
7uhy-assembly1.cif.gz_H-2 human gator2 complex 0.7031 52 502
7uhy-assembly1.cif.gz_H-2 human gator2 complex 0.6967 52 502
7wb4-assembly1.cif.gz_d cryo-em structure of the nr subunit from x. laevis npc 0.6816 256 536
7vci-assembly1.cif.gz_L structure of xenopus laevis npc nuclear ring asymmetric unit 0.6659 84 502
7fik-assembly1.cif.gz_D the cryo-em structure of the cr subunit from x. laevis npc 0.6406 52 502
ID Description Score Start End Superfamily
af_A1XF92_202_447_2.130.10.130 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;Integrin alpha, N-terminal 0.8079 287 544 2.130.10.130
af_Q5A6L5_115_509_3.90.70.10 Alpha Beta;Alpha-Beta Complex;Cathepsin B; Chain A;Cysteine proteinases 0.7356 597 623 3.90.70.10
af_A4I7C3_15_298_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6851 82 539 2.130.10.10
af_A4I7C3_15_298_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6738 82 539 2.130.10.10
af_Q94CQ0_256_430_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6724 133 329 2.130.10.10
ID Description Score Start End GO Terms
AF-A0A1R0KHH1-F1-model_v4 RNA-binding protein 0.9673 1 639
AF-A0A1R0KHH1-F1-model_v4 RNA-binding protein 0.9659 1 639
AF-T2J1Y2-F1-model_v4 RNA-binding protein 0.9557 41 507
AF-A0A1C4LB65-F1-model_v4 Repeat domain-containing protein 0.9461 193 639
AF-A0A1Q8BNS2-F1-model_v4 RNA-binding protein 0.9458 50 569

Feature Viewer

pLDDT pTM Quality
89.05 0.9 High
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Predicted Structure (AlphaFold2)

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