F161570

General Info

Members Datasets Scaffolds Average Seq Length
134 114 97 200

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2857604169|2857606645
Length 195
Sequence VIAEDQRMLLGALGSLLSLEDDMEVVGQAANGEEAVTLVRELQPDICIMDIEMPLKTGLEAAEELKNDACRVIILTTFARTGYFQRALKAKVSGYLLKDSPSDELASSIRSIMNGRKVYAPELMDDLYSEENPLTEREKDVLALVSEGKSTGEIAKQLNLKNGTVRNYISTIFDKLEVKNRIEAISQSKEKGWFK

Samples

Sample ID Description Type Environment
1 2540341094 Bacillus subtilis XF-1 Isolate Rhizosphere
2 2671180330 Peribacillus simplex SH-B26 Isolate Unclassified
3 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
4 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
5 2808606399 Bacillus sp. SJZ110 Isolate Rhizosphere
6 2816332186 Peribacillus frigoritolerans 3612 Isolate Unclassified
7 2842682962 Bacillus sp. R-72492 Isolate Unclassified
8 2849139964 Bacillus sp. R-71875 Isolate Unclassified
9 2857472729 Cohnella sp. R-74144 Isolate Unclassified
10 2857581216 Bacillus sp. R-71922 Isolate Unclassified
11 2857604169 Domibacillus sp. R-71921 Isolate Unclassified
12 2860837431 Bacillus sp. WR11 Isolate Unclassified
13 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
14 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
15 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
16 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
17 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
18 2969136845 Bacillus subtilis TLO3 Isolate Rhizosphere
19 2969765954 Bacillus intestinalis GM2 Isolate Rhizosphere
20 2969770375 Bacillus subtilis GM5 Isolate Rhizosphere
21 2977254563 Bacillus sp. SORGH_AS 510 Isolate Unclassified
22 2980492589 Bacillus subtilis GQJK2 Isolate Rhizosphere
23 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
24 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
25 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
26 3006973921 Bacillus sp. FJAT-49736 Isolate Rhizosphere
27 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
29 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
30 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
31 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
32 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
33 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
34 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
35 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
38 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
39 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
42 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
43 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
44 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
45 3300009984 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_127 metaG Metagenome Rhizosphere
46 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
51 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
57 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
58 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
59 3300030735 Rhizosphere soil microbial communities in a healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 4 Metagenome Rhizosphere
60 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
61 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
62 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
63 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
64 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
65 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
66 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
67 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
68 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
69 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
70 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
71 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
72 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
73 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
74 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
75 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
76 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
77 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
78 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
79 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
80 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
81 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
82 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
83 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
84 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
85 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
86 3300049514 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought Metagenome Rhizosphere
87 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
96 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
97 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
98 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
99 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
100 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
102 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
103 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
104 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
105 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
106 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
107 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
108 8022653035 Bacillus sp. Rc4 Isolate Unclassified
109 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
110 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
111 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
112 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
113 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
114 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 74.63
Metatranscriptomes 0
Isolates 25.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.49
Nodule 0.75
Rhizoplane 5.97
Rhizosphere 72.39
Stem 0
Stem Tuber 0
Unclassified 19.4

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10002491 3300003203 Bacteria 8706
2 rootH2_10281112 3300003320 Bacteria 1434
3 Ga0070668_100011633 3300005347 Bacteria 6548
4 Ga0070667_100011687 3300005367 Bacteria 7257
5 Ga0070713_100382875 3300005436 Bacteria 1311
6 Ga0070710_10000049 3300005437 Bacteria 56819
7 Ga0070710_10000140 3300005437 Bacteria 33397
8 Ga0068867_100263613 3300005459 Bacteria 1406
9 Ga0070685_10110493 3300005466 Bacteria 1692
10 Ga0068859_100251685 3300005617 Bacteria 1857
11 Ga0068863_100080380 3300005841 Bacteria 3087
12 Ga0068858_100045806 3300005842 Bacteria 4055
13 Ga0068862_100114862 3300005844 Bacteria 2367
14 Ga0081539_10000121 3300005985 Bacteria 183432
15 Ga0097620_100251714 3300006931 Bacteria 1857
16 Ga0099826_10124038 3300006948 Bacteria 1516
17 Ga0075435_100010042 3300007076 Bacteria 6902
18 Ga0105243_10346635 3300009148 Bacteria 1362
19 Ga0105249_10353938 3300009553 Bacteria 1488
20 Ga0105029_100307 3300009984 Bacteria 2561
21 Ga0157371_10007578 3300013102 Bacteria 8759
22 Ga0157375_10116914 3300013308 Bacteria 2772
23 Ga0163163_10053684 3300014325 Bacteria 3979
24 Ga0157379_10025816 3300014968 Bacteria 5223
25 Ga0207426_1101830 3300025302 Bacteria 740
26 Ga0207692_10000060 3300025898 Bacteria 32399
27 Ga0207692_10000659 3300025898 Bacteria 12149
28 Ga0207700_10654577 3300025928 Bacteria 937
29 Ga0207664_10096445 3300025929 Bacteria 2434
30 Ga0207664_10207619 3300025929 Bacteria 1693
31 Ga0207702_10668340 3300026078 Bacteria 1022
32 Ga0207648_10129940 3300026089 Bacteria 2217
33 Ga0316177_1116857 3300030731 Bacteria 4033
34 Ga0316177_1143400 3300030731 Bacteria 1976
35 Ga0316176_1054158 3300030732 Bacteria 2035
36 Ga0316176_1213696 3300030732 Bacteria 4376
37 Ga0314311_1090830 3300030733 Bacteria 3798
38 Ga0316178_1021250 3300030735 Bacteria 1969
39 Ga0316180_1030387 3300030736 Bacteria 1867
40 Ga0316180_1092779 3300030736 Bacteria 1306
41 Ga0307516_10041079 3300031730 Bacteria 4600
42 Ga0307516_10059599 3300031730 Bacteria 3712
43 Ga0307518_10243754 3300031838 Bacteria 1150
44 Ga0326468_10010662 3300031889 Bacteria 934
45 Ga0307416_100025104 3300032002 Bacteria 4363
46 Ga0307416_100437377 3300032002 Bacteria 1357
47 Ga0307507_10006347 3300033179 Bacteria 18248
48 Ga0307507_10039522 3300033179 Bacteria 4760
49 Ga0373941_0043021 3300035115 Bacteria 1404
50 Ga0373937_0031530 3300036401 Bacteria 4804
51 Ga0451802_1482483 3300041460 Bacteria 626
52 Ga0451577_0011496 3300042876 Bacteria 8367
53 Ga0466969_0003915 3300044656 Bacteria 7906
54 Ga0466972_0069580 3300044658 Bacteria 1680
55 Ga0466965_0000625 3300044683 Bacteria 12900
56 Ga0466965_0003302 3300044683 Bacteria 7060
57 Ga0466965_0006809 3300044683 Bacteria 5220
58 Ga0466965_0025773 3300044683 Bacteria 2848
59 Ga0466961_0195535 3300044693 Bacteria 1252
60 Ga0466968_0006793 3300044735 Bacteria 4328
61 Ga0466968_0069386 3300044735 Bacteria 1532
62 Ga0466960_0063543 3300044901 Bacteria 1817
63 Ga0495603_0157860 3300046455 Bacteria 1316
64 Ga0495607_0116919 3300046501 Bacteria 1406
65 Ga0495602_0285842 3300048088 Bacteria 1213
66 Ga0495626_0121095 3300048091 Bacteria 1125
67 Ga0496100_0931516 3300048903 Bacteria 683
68 Ga0496104_0243645 3300048907 Bacteria 1710
69 Ga0496109_0669232 3300048912 Bacteria 975
70 Ga0496110_0000317 3300048913 Bacteria 31945
71 Ga0496111_0004871 3300048914 Bacteria 8522
72 Ga0496115_0026047 3300048918 Bacteria 4560
73 Ga0501291_048502 3300049514 Bacteria 767
74 Ga0501032_0083889 3300049569 Bacteria 2118
75 Ga0501034_0128342 3300049571 Bacteria 2520
76 Ga0501036_0058718 3300049572 Bacteria 3259
77 Ga0501037_0106756 3300049573 Bacteria 2018
78 Ga0501037_0349706 3300049573 Bacteria 1020
79 Ga0501038_0071058 3300049574 Bacteria 2953
80 Ga0501039_0100362 3300049575 Bacteria 2259
81 Ga0501043_0041478 3300049579 Bacteria 3616
82 Ga0501047_0019626 3300049581 Bacteria 6486
83 Ga0501047_0135987 3300049581 Bacteria 2338
84 Ga0501047_0159186 3300049581 Bacteria 2130
85 Ga0501070_0602952 3300049586 Bacteria 875
86 Ga0501071_0008682 3300049587 Bacteria 6723
87 Ga0501076_0105358 3300049592 Bacteria 2276
88 Ga0501217_043003 3300049661 Bacteria 1156
89 Ga0501081_0127982 3300049743 Bacteria 1813
90 Ga0501035_0341052 3300049822 Bacteria 1255
91 Ga0501045_0209173 3300049824 Bacteria 1453
92 nmdc:mga0qj67_329409_c1 3300050509 Bacteria 1236
93 nmdc:mga06r32_410960_c1 3300050510 Bacteria 1335
94 nmdc:mga0rr50_5284_c1 3300050513 Bacteria 4289
95 Ga0500644_0009709 3300053088 Bacteria 2583
96 Ga0501084_0043031 3300054114 Bacteria 3778
97 Ga0530510_0127523 3300061734 Bacteria 1871

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300006948 Ga0099826_10124038 Ga0099826_101240381 176
2 3300042876 Ga0451577_0011496 Ga0451577_0011496_6433_7002 189
3 3300046455 Ga0495603_0157860 Ga0495603_0157860_279_854 189
4 3300049514 Ga0501291_048502 Ga0501291_048502_182_757 189
5 3300049661 Ga0501217_043003 Ga0501217_043003_571_1146 189
6 iso_pu_bacteria 2857604169 2857606645 194
7 iso_pu_bacteria 2857472729 2857476037 195
8 iso_pu_bacteria 2540341094 2540608323 196
9 iso_pu_bacteria 2671180330 2672338472 196
10 iso_pu_bacteria 2808606399 2809053463 196
11 iso_pu_bacteria 2816332186 2816865589 196
12 iso_pu_bacteria 2842682962 2842686452 196
13 iso_pu_bacteria 2849139964 2849143324 196
14 iso_pu_bacteria 2857581216 2857583391 196
15 iso_pu_bacteria 2860837431 2860841125 196
16 iso_pu_bacteria 2936361878 2936362797 196
17 iso_pu_bacteria 2969136845 2969140319 196
18 iso_pu_bacteria 2969765954 2969768893 196
19 iso_pu_bacteria 2969770375 2969771228 196
20 iso_pu_bacteria 2977254563 2977255795 196
21 iso_pu_bacteria 2980492589 2980496107 196
22 iso_pu_bacteria 3001892409 3001895024 196
23 iso_pu_bacteria 3006973921 3006977197 196
24 iso_pu_bacteria 8022653035 8022657150 196
25 iso_pu_bacteria 2791355406 2793983243 197
26 iso_pu_bacteria 2795385470 2795784904 197
27 iso_pu_bacteria 2862178590 2862182530 197
28 iso_pu_bacteria 2891326441 2891327759 197
29 iso_pu_bacteria 2891326441 2891327760 197
30 iso_pu_bacteria 2997600082 2997607967 197
31 iso_pu_bacteria 8047893842 8047898647 197
32 iso_pu_bacteria 8048127548 8048136013 197
33 iso_pu_bacteria 8048356638 8048360272 197
34 iso_pu_bacteria 8048369669 8048375609 197
35 iso_pu_bacteria 8048379754 8048382596 197
36 3300013102 Ga0157371_10007578 Ga0157371_100075786 198
37 3300046501 Ga0495607_0116919 Ga0495607_0116919_231_830 198
38 3300050510 nmdc:mga06r32_410960_c1 nmdc:mga06r32_410960_c1_613_1209 198
39 iso_pu_bacteria 2867312974 2867314068 198
40 iso_pu_bacteria 2867319477 2867321371 198
41 iso_pu_bacteria 2990088156 2990090100 198
42 3300005459 Ga0068867_100263613 Ga0068867_1002636132 200
43 3300007076 Ga0075435_100010042 Ga0075435_1000100426 200
44 3300026089 Ga0207648_10129940 Ga0207648_101299403 200
45 3300032002 Ga0307416_100025104 Ga0307416_1000251045 200
46 3300035115 Ga0373941_0043021 Ga0373941_0043021_611_1213 200
47 3300048091 Ga0495626_0121095 Ga0495626_0121095_232_846 200
48 3300048903 Ga0496100_0931516 Ga0496100_0931516_28_642 200
49 3300048907 Ga0496104_0243645 Ga0496104_0243645_1002_1616 200
50 3300048912 Ga0496109_0669232 Ga0496109_0669232_302_916 200
51 3300048913 Ga0496110_0000317 Ga0496110_0000317_18242_18856 200
52 3300048914 Ga0496111_0004871 Ga0496111_0004871_6698_7312 200
53 3300049587 Ga0501071_0008682 Ga0501071_0008682_2709_3314 200
54 3300049592 Ga0501076_0105358 Ga0501076_0105358_174_779 200
55 3300049743 Ga0501081_0127982 Ga0501081_0127982_428_1033 200
56 3300050513 nmdc:mga0rr50_5284_c1 nmdc:mga0rr50_5284_c1_1298_1900 200
57 3300054114 Ga0501084_0043031 Ga0501084_0043031_1422_2027 200
58 3300061734 Ga0530510_0127523 Ga0530510_0127523_1016_1621 200
59 3300003203 JGI25406J46586_10002491 JGI25406J46586_100024914 201
60 3300003203 JGI25406J46586_10002491 JGI25406J46586_100024919 201
61 3300003320 rootH2_10281112 rootH2_102811122 201
62 3300005347 Ga0070668_100011633 Ga0070668_1000116332 201
63 3300005367 Ga0070667_100011687 Ga0070667_1000116874 201
64 3300005436 Ga0070713_100382875 Ga0070713_1003828752 201
65 3300005437 Ga0070710_10000049 Ga0070710_1000004910 201
66 3300005437 Ga0070710_10000140 Ga0070710_1000014023 201
67 3300005466 Ga0070685_10110493 Ga0070685_101104932 201
68 3300005617 Ga0068859_100251685 Ga0068859_1002516852 201
69 3300005841 Ga0068863_100080380 Ga0068863_1000803802 201
70 3300005842 Ga0068858_100045806 Ga0068858_1000458063 201
71 3300005844 Ga0068862_100114862 Ga0068862_1001148621 201
72 3300005985 Ga0081539_10000121 Ga0081539_10000121160 201
73 3300005985 Ga0081539_10000121 Ga0081539_10000121165 201
74 3300006931 Ga0097620_100251714 Ga0097620_1002517142 201
75 3300009148 Ga0105243_10346635 Ga0105243_103466352 201
76 3300009553 Ga0105249_10353938 Ga0105249_103539382 201
77 3300009984 Ga0105029_100307 Ga0105029_1003072 201
78 3300013308 Ga0157375_10116914 Ga0157375_101169142 201
79 3300014325 Ga0163163_10053684 Ga0163163_100536843 201
80 3300014968 Ga0157379_10025816 Ga0157379_100258164 201
81 3300025302 Ga0207426_1101830 Ga0207426_11018301 201
82 3300025898 Ga0207692_10000060 Ga0207692_100000607 201
83 3300025898 Ga0207692_10000659 Ga0207692_100006599 201
84 3300025928 Ga0207700_10654577 Ga0207700_106545771 201
85 3300025929 Ga0207664_10096445 Ga0207664_100964452 201
86 3300025929 Ga0207664_10207619 Ga0207664_102076191 201
87 3300026078 Ga0207702_10668340 Ga0207702_106683402 201
88 3300030731 Ga0316177_1116857 Ga0316177_11168572 201
89 3300030731 Ga0316177_1143400 Ga0316177_11434002 201
90 3300030732 Ga0316176_1054158 Ga0316176_10541581 201
91 3300030732 Ga0316176_1213696 Ga0316176_12136964 201
92 3300030733 Ga0314311_1090830 Ga0314311_10908305 201
93 3300030735 Ga0316178_1021250 Ga0316178_10212502 201
94 3300030736 Ga0316180_1030387 Ga0316180_10303872 201
95 3300030736 Ga0316180_1092779 Ga0316180_10927792 201
96 3300031730 Ga0307516_10041079 Ga0307516_100410794 201
97 3300031730 Ga0307516_10059599 Ga0307516_100595992 201
98 3300031838 Ga0307518_10243754 Ga0307518_102437542 201
99 3300031889 Ga0326468_10010662 Ga0326468_100106622 201
100 3300032002 Ga0307416_100437377 Ga0307416_1004373772 201
101 3300033179 Ga0307507_10006347 Ga0307507_1000634712 201
102 3300033179 Ga0307507_10006347 Ga0307507_1000634715 201
103 3300033179 Ga0307507_10039522 Ga0307507_100395222 201
104 3300036401 Ga0373937_0031530 Ga0373937_0031530_3329_3934 201
105 3300041460 Ga0451802_1482483 Ga0451802_1482483_11_616 201
106 3300044656 Ga0466969_0003915 Ga0466969_0003915_5383_5988 201
107 3300044658 Ga0466972_0069580 Ga0466972_0069580_349_954 201
108 3300044683 Ga0466965_0000625 Ga0466965_0000625_4935_5540 201
109 3300044683 Ga0466965_0003302 Ga0466965_0003302_5026_5631 201
110 3300044683 Ga0466965_0006809 Ga0466965_0006809_2871_3476 201
111 3300044683 Ga0466965_0025773 Ga0466965_0025773_1371_1979 201
112 3300044693 Ga0466961_0195535 Ga0466961_0195535_308_913 201
113 3300044735 Ga0466968_0006793 Ga0466968_0006793_1943_2548 201
114 3300044735 Ga0466968_0069386 Ga0466968_0069386_269_874 201
115 3300044901 Ga0466960_0063543 Ga0466960_0063543_1026_1631 201
116 3300048088 Ga0495602_0285842 Ga0495602_0285842_180_785 201
117 3300048918 Ga0496115_0026047 Ga0496115_0026047_3099_3728 201
118 3300049569 Ga0501032_0083889 Ga0501032_0083889_1009_1617 201
119 3300049571 Ga0501034_0128342 Ga0501034_0128342_534_1142 201
120 3300049572 Ga0501036_0058718 Ga0501036_0058718_1784_2392 201
121 3300049573 Ga0501037_0106756 Ga0501037_0106756_351_959 201
122 3300049573 Ga0501037_0349706 Ga0501037_0349706_206_814 201
123 3300049574 Ga0501038_0071058 Ga0501038_0071058_2010_2618 201
124 3300049575 Ga0501039_0100362 Ga0501039_0100362_1045_1653 201
125 3300049579 Ga0501043_0041478 Ga0501043_0041478_2114_2725 201
126 3300049581 Ga0501047_0019626 Ga0501047_0019626_1568_2179 201
127 3300049581 Ga0501047_0135987 Ga0501047_0135987_1201_1809 201
128 3300049581 Ga0501047_0159186 Ga0501047_0159186_429_1034 201
129 3300049586 Ga0501070_0602952 Ga0501070_0602952_126_734 201
130 3300049822 Ga0501035_0341052 Ga0501035_0341052_485_1093 201
131 3300049824 Ga0501045_0209173 Ga0501045_0209173_617_1225 201
132 3300050509 nmdc:mga0qj67_329409_c1 nmdc:mga0qj67_329409_c1_292_900 201
133 3300053088 Ga0500644_0009709 Ga0500644_0009709_357_962 201
134 iso_pu_bacteria 8025530807 8025533706 201

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

1

110

0.97

PF00196

GerE

Bacterial regulatory proteins, luxR family

132

187

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

132

176

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3clo-assembly1.cif.gz_B crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.985 141 201
3clo-assembly2.cif.gz_C-2 crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.984 141 201
6jqs-assembly1.cif.gz_A structure of transcription factor, gere 0.9667 138 195
3eul-assembly2.cif.gz_B structure of the signal receiver domain of the putative response regulator narl from mycobacterium tuberculosis 0.9659 2 122
7ssi-assembly1.cif.gz_C crystal structure of the desk:desr-q10a complex in the phosphotransfer state 0.9655 1 129
ID Description Score Start End Superfamily
3cloC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9964 141 195 1.10.10.10
3cloA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9955 141 195 1.10.10.10
4hyeB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9735 138 201 1.10.10.10
2q0oB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9731 141 201 1.10.10.10
1fseD00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9711 138 201 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A317HK61-F1-model_v4 DNA-binding response regulator 0.9893 1 126 GO:0000160
GO:0003677
AF-A9WTW3-F1-model_v4 Two-component response regulator 0.9829 1 139 GO:0000160
GO:0003677
AF-A0A3M1K865-F1-model_v4 DNA-binding response regulator 0.9827 1 137 GO:0000160
GO:0003677
AF-A0A3N0GY29-F1-model_v4 DNA-binding response regulator 0.9801 2 131 GO:0000160
GO:0003677
AF-A0A5M3XEI6-F1-model_v4 Response regulatory domain-containing protein 0.9787 2 126 GO:0000160
GO:0003677

Feature Viewer

pLDDT pTM Quality
93.67 0.75 High
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Predicted Structure (AlphaFold2)

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