F160389

General Info

Members Datasets Scaffolds Average Seq Length
134 95 132 263

Family's Representative Sequence

Representative Sequence 3300031727|Ga0316576_10150865|Ga0316576_101508652
Length 279
Sequence MVGLLMVIDSHCHLDHQYFTEGADAVLARARTAGVGAFVAVGVGSQEAARQTVELACRQADVVATVGIHPHEASSFVEVWPLLEPLFDDPRVVAVGETGLDFHYDHSSRHHQVDAFGRQIAFARRRRLPLVVHTREAPRETLDILAGESARDVGGVIHCFSEDREFASRALDLGFDLSFSGIVTFKNAQSVHDVARWAPEDRILIETDSPYLAPVPLRGKRCEPAYVVHTATRMAELRSISFERLEAITSANACRLFGVQLAAAVRACESSQDGQASPG

Samples

Sample ID Description Type Environment
1 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
2 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
3 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
16 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
27 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
35 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
36 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
37 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
38 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
47 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
49 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
50 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
51 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
52 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
53 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
54 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
55 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
56 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
57 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
58 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
59 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
60 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
61 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
62 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
63 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
64 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
65 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
66 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
67 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
68 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
71 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
72 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
73 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
74 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
75 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
76 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
77 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
78 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
82 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
83 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
84 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
85 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
86 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
87 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
88 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
90 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
91 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
92 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
93 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
94 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
95 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.52
Metatranscriptomes 2.24
Isolates 2.24

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.75
Nodule 0
Rhizoplane 0
Rhizosphere 89.55
Stem 0
Stem Tuber 0
Unclassified 9.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10000222 3300003203 Bacteria 25084
2 JGI25406J46586_10025366 3300003203 Bacteria 2302
3 rootH1_10043433 3300003316 Bacteria 18616
4 rootH1_10043433 3300003323 Bacteria 24008
5 rootH1_10083837 3300003323 Bacteria 2780
6 rootH1_10105246 3300003323 Bacteria 3598
7 rootH1_10191645 3300003323 Unclassified 2532
8 rootH1_10214136 3300003323 Bacteria 3792
9 rootH1_10235974 3300003323 Bacteria 2842
10 Ga0070683_100236284 3300005329 Bacteria 1738
11 Ga0070682_100006514 3300005337 Bacteria 6552
12 Ga0070714_100413319 3300005435 Bacteria 1277
13 Ga0070708_100003215 3300005445 Bacteria 12746
14 Ga0070708_100107765 3300005445 Bacteria 2558
15 Ga0070706_100011413 3300005467 Bacteria 8253
16 Ga0070706_100013748 3300005467 Bacteria 7484
17 Ga0070706_100131874 3300005467 Bacteria 2332
18 Ga0070707_100000545 3300005468 Bacteria 37631
19 Ga0070707_100011452 3300005468 Bacteria 8271
20 Ga0070707_100076318 3300005468 Bacteria 3233
21 Ga0070698_100005351 3300005471 Bacteria 14040
22 Ga0070698_100029136 3300005471 Bacteria 5729
23 Ga0070698_100140437 3300005471 Bacteria 2367
24 Ga0070698_100386091 3300005471 Unclassified 1333
25 Ga0070699_100014158 3300005518 Bacteria 6861
26 Ga0070699_100063233 3300005518 Bacteria 3209
27 Ga0070697_100004269 3300005536 Bacteria 10954
28 Ga0070697_100051304 3300005536 Bacteria 3351
29 Ga0070697_100136607 3300005536 Bacteria 2059
30 Ga0070696_100226822 3300005546 Bacteria 1404
31 Ga0070696_100406193 3300005546 Bacteria 1067
32 Ga0070704_100089907 3300005549 Bacteria 2285
33 Ga0068855_100009850 3300005563 Bacteria 11527
34 Ga0068857_100107666 3300005577 Bacteria 2504
35 Ga0068859_100216172 3300005617 Bacteria 2004
36 Ga0068863_100154392 3300005841 Bacteria 2198
37 Ga0068862_100098753 3300005844 Unclassified 2551
38 Ga0081539_10000076 3300005985 Bacteria 229037
39 Ga0070717_10002471 3300006028 Bacteria 13043
40 Ga0070717_10012752 3300006028 Bacteria 6414
41 Ga0075428_100012935 3300006844 Bacteria 9282
42 Ga0075431_100126861 3300006847 Bacteria 2633
43 Ga0075434_100148615 3300006871 Bacteria 2363
44 Ga0075435_100026328 3300007076 Bacteria 4535
45 Ga0111539_10010108 3300009094 Bacteria 11893
46 Ga0111539_10049731 3300009094 Bacteria 4998
47 Ga0105245_10000134 3300009098 Bacteria 70584
48 Ga0105241_10008600 3300009174 Bacteria 7501
49 Ga0105237_10128748 3300009545 Bacteria 2526
50 Ga0163163_10588789 3300014325 Bacteria 1175
51 Ga0206352_10177611 3300020078 Bacteria 1417
52 Ga0206353_10922243 3300020082 Unclassified 1016
53 Ga0213874_10000049 3300021377 Bacteria 16425
54 Ga0213874_10004149 3300021377 Bacteria 3277
55 Ga0213875_10149792 3300021388 Unclassified 1093
56 Ga0224712_10064980 3300022467 Unclassified 1465
57 Ga0207684_10002554 3300025910 Bacteria 18282
58 Ga0207684_10090856 3300025910 Bacteria 2602
59 Ga0207684_10163068 3300025910 Bacteria 1920
60 Ga0207654_10004194 3300025911 Bacteria 7275
61 Ga0207671_10230604 3300025914 Bacteria 1452
62 Ga0207646_10000749 3300025922 Bacteria 42175
63 Ga0207646_10011132 3300025922 Bacteria 8731
64 Ga0207687_10000700 3300025927 Bacteria 22678
65 Ga0207667_10010295 3300025949 Bacteria 10943
66 Ga0207702_10291772 3300026078 Bacteria 1545
67 Ga0207674_10036807 3300026116 Bacteria 5095
68 Ga0207428_10134896 3300027907 Bacteria 1887
69 Ga0207428_10212064 3300027907 Bacteria 1455
70 Ga0268265_10062728 3300028380 Bacteria 2857
71 Ga0265339_10003582 3300031249 Bacteria 10850
72 Ga0265316_10016500 3300031344 Bacteria 6401
73 Ga0307408_100458814 3300031548 Bacteria 1107
74 Ga0307508_10390971 3300031616 Bacteria 982
75 Ga0265314_10000001 3300031711 Bacteria 3792860
76 Ga0316576_10006702 3300031727 Bacteria 7196
77 Ga0316576_10082106 3300031727 Bacteria 2392
78 Ga0316576_10150865 3300031727 Bacteria 1751
79 Ga0316578_10015695 3300031728 Bacteria 4080
80 Ga0316578_10041212 3300031728 Unclassified 2673
81 Ga0373954_0001636 3300035118 Bacteria 9169
82 Ga0373956_0002451 3300035119 Bacteria 7554
83 Ga0373927_0000044 3300035695 Bacteria 92578
84 Ga0373933_0002084 3300035724 Bacteria 11480
85 Ga0373933_0002477 3300035724 Bacteria 10390
86 Ga0316584_0008409 3300036712 Bacteria 7111
87 Ga0373925_0193669 3300037068 Bacteria 1614
88 Ga0395898_0188346 3300037466 Bacteria 1972
89 Ga0436364_1560737 3300037853 Bacteria 1184
90 Ga0436363_0074374 3300039450 Bacteria 27916
91 Ga0436363_1024125 3300039450 Bacteria 15843
92 Ga0436362_0797782 3300039453 Bacteria 2591
93 Ga0466969_0001071 3300044656 Bacteria 14796
94 Ga0466966_0001319 3300044684 Bacteria 15910
95 Ga0466966_0127404 3300044684 Bacteria 1560
96 Ga0466961_0088617 3300044693 Bacteria 1955
97 Ga0466964_0000354 3300044706 Bacteria 13767
98 Ga0453684_0000054 3300044712 Bacteria 543775
99 Ga0453684_0006434 3300044712 Bacteria 22312
100 Ga0466971_0049345 3300044719 Unclassified 1894
101 Ga0466968_0016432 3300044735 Bacteria 2947
102 Ga0466970_0000604 3300044765 Bacteria 17601
103 Ga0466970_0229705 3300044765 Bacteria 1037
104 Ga0466957_0006550 3300044842 Bacteria 6580
105 Ga0466960_0054830 3300044901 Bacteria 1937
106 Ga0466959_0016116 3300045049 Bacteria 5454
107 Ga0466959_0021822 3300045049 Bacteria 4726
108 Ga0466959_0024908 3300045049 Bacteria 4432
109 Ga0466959_0166359 3300045049 Bacteria 1549
110 Ga0466958_0001354 3300045836 Bacteria 11578
111 Ga0466967_0956836 3300045976 Bacteria 852
112 Ga0501037_0008066 3300049573 Bacteria 7715
113 Ga0501046_0197244 3300049580 Bacteria 1499
114 Ga0501047_0090575 3300049581 Unclassified 2936
115 Ga0501067_0010431 3300049583 Bacteria 5143
116 Ga0501071_0320386 3300049587 Bacteria 1177
117 Ga0501073_0052157 3300049589 Bacteria 2864
118 Ga0501075_0099714 3300049591 Bacteria 2206
119 Ga0501076_0375095 3300049592 Bacteria 1169
120 Ga0501080_0287285 3300049742 Bacteria 1494
121 Ga0501080_0414918 3300049742 Bacteria 1210
122 Ga0501083_0073944 3300049744 Bacteria 2265
123 Ga0501035_0410233 3300049822 Bacteria 1126
124 Ga0501044_0034219 3300049823 Bacteria 5331
125 nmdc:mga05p37_125726_c1 3300050507 Bacteria 3149
126 nmdc:mga05p37_362520_c1 3300050507 Bacteria 1703
127 nmdc:mga06r32_100718_c1 3300050510 Bacteria 2834
128 nmdc:mga08y16_26784_c1 3300050511 Bacteria 6075
129 nmdc:mga08y16_276105_c1 3300050511 Bacteria 1734
130 nmdc:mga0n895_68980_c1 3300050512 Bacteria 3502
131 nmdc:mga0a205_200275_c1 3300050515 Bacteria 1887
132 Ga0500637_0058301 3300053178 Bacteria 2209

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005471 Ga0070698_100029136 Ga0070698_1000291363 229
2 3300006871 Ga0075434_100148615 Ga0075434_1001486151 230
3 3300050512 nmdc:mga0n895_68980_c1 nmdc:mga0n895_68980_c1_1093_1836 230
4 3300050507 nmdc:mga05p37_125726_c1 nmdc:mga05p37_125726_c1_108_851 242
5 3300050515 nmdc:mga0a205_200275_c1 nmdc:mga0a205_200275_c1_789_1532 242
6 3300005844 Ga0068862_100098753 Ga0068862_1000987532 244
7 3300028380 Ga0268265_10062728 Ga0268265_100627283 244
8 3300037068 Ga0373925_0193669 Ga0373925_0193669_369_1130 245
9 iso_pu_bacteria 2883577096 2883577647 251
10 3300005471 Ga0070698_100386091 Ga0070698_1003860912 252
11 3300044712 Ga0453684_0000054 Ga0453684_0000054_106980_107747 252
12 3300044712 Ga0453684_0006434 Ga0453684_0006434_9378_10145 252
13 iso_pu_bacteria 2883291878 2883294429 252
14 iso_pu_bacteria 2883354860 2883357050 252
15 3300003323 rootH1_10043433 rootH1_100434332 253
16 3300003323 rootH1_10083837 rootH1_100838372 253
17 3300003323 rootH1_10105246 rootH1_101052462 253
18 3300005467 Ga0070706_100013748 Ga0070706_1000137483 253
19 3300005468 Ga0070707_100000545 Ga0070707_10000054529 253
20 3300005471 Ga0070698_100005351 Ga0070698_1000053518 253
21 3300005518 Ga0070699_100063233 Ga0070699_1000632332 253
22 3300005536 Ga0070697_100004269 Ga0070697_1000042691 253
23 3300005536 Ga0070697_100136607 Ga0070697_1001366072 253
24 3300005563 Ga0068855_100009850 Ga0068855_1000098504 253
25 3300006028 Ga0070717_10002471 Ga0070717_100024719 253
26 3300009098 Ga0105245_10000134 Ga0105245_1000013440 253
27 3300009174 Ga0105241_10008600 Ga0105241_100086005 253
28 3300009545 Ga0105237_10128748 Ga0105237_101287482 253
29 3300025910 Ga0207684_10090856 Ga0207684_100908561 253
30 3300025911 Ga0207654_10004194 Ga0207654_100041942 253
31 3300025914 Ga0207671_10230604 Ga0207671_102306042 253
32 3300025922 Ga0207646_10000749 Ga0207646_1000074940 253
33 3300025927 Ga0207687_10000700 Ga0207687_1000070015 253
34 3300025949 Ga0207667_10010295 Ga0207667_100102954 253
35 3300026078 Ga0207702_10291772 Ga0207702_102917722 253
36 3300049583 Ga0501067_0010431 Ga0501067_0010431_4059_4859 253
37 3300005435 Ga0070714_100413319 Ga0070714_1004133191 254
38 3300005445 Ga0070708_100003215 Ga0070708_1000032157 254
39 3300005445 Ga0070708_100107765 Ga0070708_1001077652 254
40 3300005467 Ga0070706_100011413 Ga0070706_1000114136 254
41 3300005468 Ga0070707_100011452 Ga0070707_1000114524 254
42 3300005471 Ga0070698_100140437 Ga0070698_1001404372 254
43 3300005518 Ga0070699_100014158 Ga0070699_1000141584 254
44 3300005536 Ga0070697_100051304 Ga0070697_1000513042 254
45 3300005577 Ga0068857_100107666 Ga0068857_1001076662 254
46 3300006028 Ga0070717_10012752 Ga0070717_100127524 254
47 3300006844 Ga0075428_100012935 Ga0075428_1000129353 254
48 3300006847 Ga0075431_100126861 Ga0075431_1001268613 254
49 3300009094 Ga0111539_10049731 Ga0111539_100497312 254
50 3300020078 Ga0206352_10177611 Ga0206352_101776111 254
51 3300020082 Ga0206353_10922243 Ga0206353_109222432 254
52 3300021377 Ga0213874_10000049 Ga0213874_1000004914 254
53 3300021377 Ga0213874_10004149 Ga0213874_100041492 254
54 3300021388 Ga0213875_10149792 Ga0213875_101497922 254
55 3300022467 Ga0224712_10064980 Ga0224712_100649801 254
56 3300025910 Ga0207684_10002554 Ga0207684_1000255412 254
57 3300025922 Ga0207646_10011132 Ga0207646_100111322 254
58 3300026116 Ga0207674_10036807 Ga0207674_100368073 254
59 3300027907 Ga0207428_10212064 Ga0207428_102120642 254
60 3300035118 Ga0373954_0001636 Ga0373954_0001636_8315_9088 254
61 3300035119 Ga0373956_0002451 Ga0373956_0002451_6215_6988 254
62 3300035695 Ga0373927_0000044 Ga0373927_0000044_41531_42304 254
63 3300035724 Ga0373933_0002084 Ga0373933_0002084_1872_2645 254
64 3300035724 Ga0373933_0002477 Ga0373933_0002477_7535_8311 254
65 3300037466 Ga0395898_0188346 Ga0395898_0188346_116_901 254
66 3300037853 Ga0436364_1560737 Ga0436364_1560737_197_976 254
67 3300039450 Ga0436363_0074374 Ga0436363_0074374_19836_20621 254
68 3300039450 Ga0436363_1024125 Ga0436363_1024125_1422_2207 254
69 3300039453 Ga0436362_0797782 Ga0436362_0797782_1477_2262 254
70 3300044656 Ga0466969_0001071 Ga0466969_0001071_52_939 254
71 3300044684 Ga0466966_0001319 Ga0466966_0001319_13182_14069 254
72 3300044684 Ga0466966_0127404 Ga0466966_0127404_378_1286 254
73 3300044693 Ga0466961_0088617 Ga0466961_0088617_997_1770 254
74 3300044706 Ga0466964_0000354 Ga0466964_0000354_12818_13705 254
75 3300044719 Ga0466971_0049345 Ga0466971_0049345_825_1622 254
76 3300044735 Ga0466968_0016432 Ga0466968_0016432_82_969 254
77 3300044765 Ga0466970_0000604 Ga0466970_0000604_84_971 254
78 3300044765 Ga0466970_0229705 Ga0466970_0229705_34_807 254
79 3300044842 Ga0466957_0006550 Ga0466957_0006550_3649_4446 254
80 3300045049 Ga0466959_0016116 Ga0466959_0016116_2606_3493 254
81 3300045049 Ga0466959_0021822 Ga0466959_0021822_560_1468 254
82 3300045049 Ga0466959_0024908 Ga0466959_0024908_1050_1823 254
83 3300045049 Ga0466959_0166359 Ga0466959_0166359_530_1303 254
84 3300045836 Ga0466958_0001354 Ga0466958_0001354_10111_11019 254
85 3300045976 Ga0466967_0956836 Ga0466967_0956836_50_829 254
86 3300049573 Ga0501037_0008066 Ga0501037_0008066_4407_5195 254
87 3300049580 Ga0501046_0197244 Ga0501046_0197244_649_1437 254
88 3300049581 Ga0501047_0090575 Ga0501047_0090575_750_1538 254
89 3300049742 Ga0501080_0287285 Ga0501080_0287285_572_1360 254
90 3300049823 Ga0501044_0034219 Ga0501044_0034219_30_818 254
91 3300050510 nmdc:mga06r32_100718_c1 nmdc:mga06r32_100718_c1_1029_1808 254
92 3300050511 nmdc:mga08y16_276105_c1 nmdc:mga08y16_276105_c1_284_1063 254
93 3300053178 Ga0500637_0058301 Ga0500637_0058301_1414_2199 254
94 3300009094 Ga0111539_10010108 Ga0111539_100101082 255
95 3300031616 Ga0307508_10390971 Ga0307508_103909711 255
96 3300031727 Ga0316576_10006702 Ga0316576_100067026 255
97 3300031727 Ga0316576_10082106 Ga0316576_100821063 255
98 3300031727 Ga0316576_10150865 Ga0316576_101508652 255
99 3300031728 Ga0316578_10015695 Ga0316578_100156952 255
100 3300031728 Ga0316578_10041212 Ga0316578_100412122 255
101 3300036712 Ga0316584_0008409 Ga0316584_0008409_1185_2000 255
102 3300050511 nmdc:mga08y16_26784_c1 nmdc:mga08y16_26784_c1_4899_5705 255
103 3300003323 rootH1_10191645 rootH1_101916452 256
104 3300003323 rootH1_10214136 rootH1_102141362 256
105 3300003323 rootH1_10235974 rootH1_102359743 256
106 3300005329 Ga0070683_100236284 Ga0070683_1002362842 256
107 3300005337 Ga0070682_100006514 Ga0070682_1000065149 256
108 3300005467 Ga0070706_100131874 Ga0070706_1001318741 256
109 3300005468 Ga0070707_100076318 Ga0070707_1000763181 256
110 3300005546 Ga0070696_100226822 Ga0070696_1002268222 256
111 3300005546 Ga0070696_100406193 Ga0070696_1004061931 256
112 3300005549 Ga0070704_100089907 Ga0070704_1000899072 256
113 3300005617 Ga0068859_100216172 Ga0068859_1002161722 256
114 3300005841 Ga0068863_100154392 Ga0068863_1001543921 256
115 3300007076 Ga0075435_100026328 Ga0075435_1000263284 256
116 3300014325 Ga0163163_10588789 Ga0163163_105887892 256
117 3300025910 Ga0207684_10163068 Ga0207684_101630682 256
118 3300027907 Ga0207428_10134896 Ga0207428_101348962 256
119 3300031249 Ga0265339_10003582 Ga0265339_1000358211 256
120 3300031344 Ga0265316_10016500 Ga0265316_100165004 256
121 3300031548 Ga0307408_100458814 Ga0307408_1004588142 256
122 3300031711 Ga0265314_10000001 Ga0265314_100000013207 256
123 3300044901 Ga0466960_0054830 Ga0466960_0054830_482_1255 256
124 3300049587 Ga0501071_0320386 Ga0501071_0320386_361_1137 256
125 3300049589 Ga0501073_0052157 Ga0501073_0052157_1749_2549 256
126 3300049591 Ga0501075_0099714 Ga0501075_0099714_370_1146 256
127 3300049592 Ga0501076_0375095 Ga0501076_0375095_309_1085 256
128 3300049742 Ga0501080_0414918 Ga0501080_0414918_95_874 256
129 3300049744 Ga0501083_0073944 Ga0501083_0073944_101_880 256
130 3300049822 Ga0501035_0410233 Ga0501035_0410233_10_792 256
131 3300050507 nmdc:mga05p37_362520_c1 nmdc:mga05p37_362520_c1_215_1009 256
132 3300003203 JGI25406J46586_10000222 JGI25406J46586_100002222 257
133 3300003203 JGI25406J46586_10025366 JGI25406J46586_100253662 257
134 3300005985 Ga0081539_10000076 Ga0081539_10000076146 257

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01026

TatD_DNase

TatD related DNase

8

258

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
1j6o-assembly1.cif.gz_A crystal structure of tatd-related deoxyribonuclease (tm0667) from thermotoga maritima at 1.8 a resolution 0.9479 2 252
1yix-assembly2.cif.gz_B crystal structure of ycfh, tatd homolog from escherichia coli k12, at 1.9 a resolution 0.944 1 256
2gzx-assembly2.cif.gz_B crystal structure of the tatd deoxyribonuclease mw0446 from staphylococcus aureus. northeast structural genomics consortium target zr237. 0.9405 2 252
1yix-assembly2.cif.gz_B crystal structure of ycfh, tatd homolog from escherichia coli k12, at 1.9 a resolution 0.9368 1 256
1xwy-assembly1.cif.gz_A crystal structure of tatd deoxyribonuclease from escherichia coli k12 at 2.0 a resolution 0.9347 2 253
ID Description Score Start End Superfamily
1j6oA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9471 2 252 3.20.20.140
af_P0AFQ7_2_265_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9461 1 254 3.20.20.140
af_O08343_1_262_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9446 2 253 3.20.20.140
af_P39408_1_259_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9381 2 254 3.20.20.140
af_G5EG18_4_286_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9364 2 253 3.20.20.140
ID Description Score Start End GO Terms
AF-A0A5R2N5R1-F1-model_v4 TatD family deoxyribonuclease 0.9932 72 228 GO:0005829
GO:0016788
AF-A0A258RAM9-F1-model_v4 LuxR family transcriptional regulator 0.9927 120 253 GO:0005829
GO:0016788
AF-A0A436N6N0-F1-model_v4 deleted 0.9911 108 253
AF-A0A520JB74-F1-model_v4 TatD family deoxyribonuclease 0.9911 103 253 GO:0005829
GO:0016788
AF-A0A352GJG0-F1-model_v4 LuxR family transcriptional regulator 0.9909 120 256 GO:0005829
GO:0016788

Feature Viewer

pLDDT pTM Quality
96.35 0.92 High
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Predicted Structure (AlphaFold2)

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