F154502

General Info

Members Datasets Scaffolds Average Seq Length
132 106 73 505

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2773857763|2774400678
Length 563
Sequence YIPPRPPTDTLPVVAGNTTTKREGTVSSNPQIDAPTESPAHPQARAAAPSASPEAAAEPSSGSVGERARDERVETPRAPEQPASGPASWRRAYATRLWLSDAFVLIWAVYGTQLLWFGWGNAQVAIRQDSRFNEFSYWIFSAALVIAWMWALSLIDSRDHRVIGNGPTEYVRVARASFTFFGAIAILAFLFRVDVARGYLLIALPLGIFVLLLERWLWRQWLIAQRWVGQYSAKVLLVGSEDSVAAIARELQRSPTAGYQVVGACVPSGKIAATIPGTSVPVMGTVDNVERAIGATGADTVAVTSTDDLPTMKVKQISWALEAGRQHLVLAPSIADIAGPRIHTRPVAGLPLIHVETPKFSRGQRIAKRTMDLLISVSGLILISPLMAFLAISVRLTSEGPVLFRQKRVGLKGREFEMLKFRSMVVNAEELLVDLREKQNSGNEVLFKMADDPRVTPVGKIMRKYSLDELPQLFNVISSNMSLVGPRPPLPSEVENYAEHVHRRFLMKPGITGAWQVGGRSSLSWEDSVRLDLAYVENWSLLSDLVILTKTARAAIAPGNTAH

Samples

Sample ID Description Type Environment
1 2527291627 Frankia casuarinae Thr Isolate Nodule
2 2527291629 Frankia sp. BMG5.23 Isolate Nodule
3 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
4 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
5 2576861822 Frankia sp. CeD Isolate Nodule
6 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
7 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
8 2643221546 Microbacterium sp. Root53 Isolate Unclassified
9 2643221575 Microbacterium sp. Root61 Isolate Unclassified
10 2643221692 Nocardia sp. Root136 Isolate Unclassified
11 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
12 2684623036 Frankia sp. CgIM4 Isolate Nodule
13 2710264753 Frankia sp. KB5 Isolate Nodule
14 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
15 2738541274 Mycobacterium sp. YR708 Isolate Unclassified
16 2738543028 Mycobacterium sp. YR782 Isolate Unclassified
17 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
18 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
19 2773857759 Microbacterium sp. 1294 Isolate Unclassified
20 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
21 2773857924 Frankia sp. CgIS1 Isolate Nodule
22 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
23 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
24 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
25 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
26 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
27 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
28 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
29 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
30 2902799365 Mycolicibacterium sp. P1-5 Isolate Unclassified
31 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
32 2904765812 Rhodococcus fascians 1590 Isolate Rhizosphere
33 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
34 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
35 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
36 2908811453 Rhodococcus sp. 1R11 Isolate Unclassified
37 2919069694 Microbacterium sp. 1154 Isolate Unclassified
38 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
39 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
40 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
41 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
42 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
43 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
44 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
45 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
46 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
47 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
48 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
49 3001119090 Lolliginicoccus lacisalsi G463 Isolate Rhizosphere
50 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
51 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
52 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
53 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
54 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
55 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
56 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
57 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
58 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
59 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
60 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
61 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
66 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
67 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
68 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
69 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
70 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
71 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
72 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
73 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
74 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
75 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
76 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
77 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
78 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
79 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
80 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
81 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
82 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
83 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
84 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
85 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
86 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
87 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
88 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
89 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
90 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
91 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
92 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
93 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
94 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
95 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
99 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
100 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
101 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
102 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
103 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
104 637000116 Frankia casuarinae CcI3 Isolate Nodule
105 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
106 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 56.82
Metatranscriptomes 0
Isolates 43.18

Biome Distribution

Category Percentage (%)
Aerial Root 1.52
Bulb 0
Endosphere 12.88
Nodule 5.3
Rhizoplane 5.3
Rhizosphere 38.64
Stem 0
Stem Tuber 0
Unclassified 36.36

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055540_1000053 3300003792 Bacteria 142520
2 Ga0068863_100002929 3300005841 Bacteria 16884
3 Ga0068862_100001472 3300005844 Bacteria 21595
4 Ga0081539_10003855 3300005985 Bacteria 17585
5 Ga0075363_100032060 3300006048 Bacteria 2728
6 Ga0075364_10000108 3300006051 Bacteria 33962
7 Ga0075364_10001097 3300006051 Bacteria 14462
8 Ga0075367_10042883 3300006178 Bacteria 2649
9 Ga0075367_10052440 3300006178 Bacteria 2414
10 Ga0075369_10000202 3300006186 Bacteria 17447
11 Ga0075369_10006930 3300006186 Bacteria 4302
12 Ga0105244_10013005 3300009036 Bacteria 4888
13 Ga0105250_10044989 3300009092 Bacteria 1770
14 Ga0105243_10002636 3300009148 Bacteria 14903
15 Ga0209051_1000021 3300025303 Bacteria 507633
16 Ga0207655_1025352 3300025728 Bacteria 2881
17 Ga0207641_10004194 3300026088 Bacteria 12561
18 Ga0268265_10001210 3300028380 Bacteria 22436
19 Ga0307515_10000229 3300028794 Bacteria 139040
20 Ga0265327_10000125 3300031251 Bacteria 167832
21 Ga0265327_10003691 3300031251 Bacteria 14308
22 Ga0307516_10000185 3300031730 Bacteria 80941
23 Ga0307406_10072020 3300031901 Bacteria 2267
24 Ga0307406_10102523 3300031901 Bacteria 1952
25 Ga0373942_0000677 3300035207 Bacteria 9506
26 Ga0373962_0003443 3300035242 Bacteria 3799
27 Ga0373935_0012486 3300035692 Bacteria 5108
28 Ga0436365_1215520 3300039437 Bacteria 33814
29 Ga0451793_0099924 3300041452 Bacteria 4149
30 Ga0466972_0008390 3300044658 Bacteria 5178
31 Ga0466965_0005530 3300044683 Bacteria 5698
32 Ga0466965_0010463 3300044683 Bacteria 4328
33 Ga0466966_0027287 3300044684 Bacteria 3724
34 Ga0466970_0014400 3300044765 Bacteria 4060
35 Ga0466970_0050009 3300044765 Bacteria 2229
36 Ga0466960_0002742 3300044901 Bacteria 6661
37 Ga0466960_0008281 3300044901 Bacteria 4253
38 Ga0466959_0056591 3300045049 Bacteria 2861
39 Ga0466958_0011512 3300045836 Bacteria 4982
40 Ga0466967_0095829 3300045976 Bacteria 2706
41 Ga0495618_0005133 3300046514 Bacteria 7998
42 Ga0495628_0049832 3300046516 Bacteria 3314
43 Ga0496104_0009275 3300048907 Bacteria 8751
44 Ga0496105_0007797 3300048908 Bacteria 8309
45 Ga0496105_0008521 3300048908 Bacteria 7966
46 Ga0496114_0022500 3300048917 Bacteria 5138
47 Ga0496114_0070325 3300048917 Bacteria 2939
48 Ga0496117_0001865 3300048920 Bacteria 28449
49 Ga0496118_0026389 3300048921 Bacteria 4951
50 Ga0496119_0004565 3300048922 Bacteria 13701
51 Ga0496119_0021761 3300048922 Bacteria 4619
52 Ga0496120_0003500 3300048923 Bacteria 14254
53 Ga0496120_0004311 3300048923 Bacteria 12051
54 Ga0496120_0004539 3300048923 Bacteria 11581
55 Ga0496122_0000020 3300048925 Bacteria 401675
56 Ga0496123_0000003 3300048926 Bacteria 866556
57 Ga0496123_0004641 3300048926 Bacteria 14276
58 Ga0496124_0002901 3300048927 Bacteria 21630
59 Ga0496124_0006123 3300048927 Bacteria 13210
60 Ga0496124_0013404 3300048927 Bacteria 8002
61 Ga0496125_0003785 3300048928 Bacteria 17990
62 Ga0496125_0005854 3300048928 Bacteria 13496
63 Ga0496126_0004955 3300048929 Bacteria 15529
64 Ga0501034_0001760 3300049571 Bacteria 27736
65 Ga0501044_0016996 3300049823 Bacteria 7807
66 nmdc:mga00v17_15879_c1 3300050491 Bacteria 4236
67 nmdc:mga00v17_3105_c1 3300050491 Bacteria 8537
68 nmdc:mga0yw44_31079_c1 3300050492 Bacteria 3102
69 nmdc:mga0yw44_79620_c1 3300050492 Bacteria 2050
70 nmdc:mga0sz30_6613_c1 3300050516 Bacteria 4316
71 Ga0495601_0000115 3300053077 Bacteria 44158
72 Ga0495612_0054169 3300053078 Bacteria 1652
73 Ga0500645_000104 3300053730 Bacteria 67349

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046516 Ga0495628_0049832 Ga0495628_0049832_2004_3290 413
2 iso_pu_bacteria 2710264753 2710603900 441
3 iso_pu_bacteria 2902799365 2902803157 441
4 iso_pu_bacteria 2984580707 2984582399 442
5 3300050492 nmdc:mga0yw44_79620_c1 nmdc:mga0yw44_79620_c1_523_1902 444
6 iso_pu_bacteria 2808606306 2808628728 444
7 iso_pu_bacteria 2811994872 2812322147 447
8 iso_pu_bacteria 2857720070 2857721300 449
9 3300044658 Ga0466972_0008390 Ga0466972_0008390_1691_3094 455
10 3300044683 Ga0466965_0005530 Ga0466965_0005530_951_2354 455
11 3300044901 Ga0466960_0002742 Ga0466960_0002742_1792_3195 455
12 3300031901 Ga0307406_10072020 Ga0307406_100720202 457
13 3300044684 Ga0466966_0027287 Ga0466966_0027287_1674_3314 460
14 3300045049 Ga0466959_0056591 Ga0466959_0056591_933_2573 460
15 3300045836 Ga0466958_0011512 Ga0466958_0011512_2542_4182 460
16 3300031251 Ga0265327_10000125 Ga0265327_10000125108 463
17 iso_pu_bacteria 2974294766 2974294797 463
18 iso_pu_bacteria 2974324384 2974325404 463
19 3300049571 Ga0501034_0001760 Ga0501034_0001760_20317_21837 465
20 3300003792 Ga0055540_1000053 Ga0055540_100005393 469
21 3300025303 Ga0209051_1000021 Ga0209051_1000021299 469
22 3300044683 Ga0466965_0010463 Ga0466965_0010463_13_1455 469
23 iso_pu_bacteria 2643221575 2643888159 469
24 iso_pu_bacteria 2721755702 2723641184 470
25 iso_pu_bacteria 2935409751 2935410594 470
26 3300009148 Ga0105243_10002636 Ga0105243_1000263610 471
27 3300046514 Ga0495618_0005133 Ga0495618_0005133_142_1614 472
28 3300053077 Ga0495601_0000115 Ga0495601_0000115_22905_24377 472
29 3300053078 Ga0495612_0054169 Ga0495612_0054169_62_1534 472
30 iso_pu_bacteria 2904765812 2904769211 472
31 iso_pu_bacteria 2908811453 2908811958 472
32 3300006178 Ga0075367_10042883 Ga0075367_100428833 473
33 iso_pu_bacteria 2821268502 2821268988 473
34 3300009036 Ga0105244_10013005 Ga0105244_100130052 474
35 3300025728 Ga0207655_1025352 Ga0207655_10253521 474
36 3300028794 Ga0307515_10000229 Ga0307515_1000022949 474
37 3300031730 Ga0307516_10000185 Ga0307516_100001857 474
38 3300048922 Ga0496119_0004565 Ga0496119_0004565_4160_5731 474
39 3300048923 Ga0496120_0004311 Ga0496120_0004311_6254_7825 474
40 3300048908 Ga0496105_0008521 Ga0496105_0008521_249_1766 475
41 3300005841 Ga0068863_100002929 Ga0068863_10000292913 476
42 3300005844 Ga0068862_100001472 Ga0068862_1000014723 476
43 3300026088 Ga0207641_10004194 Ga0207641_100041949 476
44 3300028380 Ga0268265_10001210 Ga0268265_1000121020 476
45 3300048927 Ga0496124_0013404 Ga0496124_0013404_5445_7025 476
46 iso_pu_bacteria 2867302475 2867307761 476
47 3300035207 Ga0373942_0000677 Ga0373942_0000677_5027_6508 478
48 3300035242 Ga0373962_0003443 Ga0373962_0003443_1441_2922 478
49 3300048920 Ga0496117_0001865 Ga0496117_0001865_4101_5675 478
50 3300048923 Ga0496120_0004539 Ga0496120_0004539_4100_5674 478
51 3300048926 Ga0496123_0004641 Ga0496123_0004641_4129_5703 478
52 3300048927 Ga0496124_0002901 Ga0496124_0002901_3455_5029 478
53 3300048928 Ga0496125_0005854 Ga0496125_0005854_7811_9385 478
54 3300048929 Ga0496126_0004955 Ga0496126_0004955_12214_13788 478
55 iso_pu_bacteria 2622736626 2623589852 478
56 3300050491 nmdc:mga00v17_15879_c1 nmdc:mga00v17_15879_c1_1337_2821 480
57 3300006051 Ga0075364_10000108 Ga0075364_1000010827 481
58 3300006178 Ga0075367_10052440 Ga0075367_100524402 481
59 3300006186 Ga0075369_10000202 Ga0075369_1000020212 481
60 3300009092 Ga0105250_10044989 Ga0105250_100449892 481
61 3300050491 nmdc:mga00v17_3105_c1 nmdc:mga00v17_3105_c1_1327_2820 481
62 3300050516 nmdc:mga0sz30_6613_c1 nmdc:mga0sz30_6613_c1_2020_3513 481
63 iso_pu_bacteria 2904770941 2904773980 482
64 3300048917 Ga0496114_0070325 Ga0496114_0070325_851_2344 483
65 iso_pu_bacteria 2643221692 2644514932 483
66 iso_pu_bacteria 2773857759 2774381974 484
67 iso_pu_bacteria 2977251589 2977252134 484
68 3300005985 Ga0081539_10003855 Ga0081539_100038554 485
69 iso_pu_bacteria 2811994872 2812322077 485
70 3300049823 Ga0501044_0016996 Ga0501044_0016996_856_2352 486
71 iso_pu_bacteria 2551306166 2552107892 486
72 iso_pu_bacteria 2852632344 2852632687 487
73 iso_pu_bacteria 2870628048 2870629384 487
74 3300048917 Ga0496114_0022500 Ga0496114_0022500_589_2145 489
75 iso_pu_bacteria 2977264416 2977265583 489
76 3300045976 Ga0466967_0095829 Ga0466967_0095829_819_2330 490
77 3300031901 Ga0307406_10102523 Ga0307406_101025231 491
78 iso_pu_bacteria 2585428157 2588107008 491
79 iso_pu_bacteria 8045830549 8045832242 491
80 3300031251 Ga0265327_10003691 Ga0265327_1000369110 492
81 3300048907 Ga0496104_0009275 Ga0496104_0009275_1548_3131 492
82 3300048908 Ga0496105_0007797 Ga0496105_0007797_6041_7624 492
83 iso_pu_bacteria 2906799679 2906799836 492
84 3300035692 Ga0373935_0012486 Ga0373935_0012486_972_2591 493
85 iso_pu_bacteria 2757320536 2758224724 493
86 iso_pu_bacteria 2870628048 2870629453 493
87 iso_pu_bacteria 8016254467 8016255048 493
88 iso_pu_bacteria 2643221546 2643753703 494
89 iso_pu_bacteria 2738541274 2738702707 494
90 iso_pu_bacteria 2738543028 2739329617 494
91 3300006048 Ga0075363_100032060 Ga0075363_1000320602 495
92 3300006051 Ga0075364_10001097 Ga0075364_100010972 495
93 iso_pu_bacteria 2773857758 2774378865 495
94 iso_pu_bacteria 2904509784 2904510322 495
95 iso_pu_bacteria 2908678064 2908678457 495
96 iso_pu_bacteria 2919069694 2919070781 495
97 iso_pu_bacteria 2928090899 2928093904 495
98 iso_pu_bacteria 2977228692 2977230357 495
99 iso_pu_bacteria 2977236895 2977239160 495
100 iso_pu_bacteria 2984542743 2984543056 495
101 iso_pu_bacteria 2808606447 2809226420 496
102 iso_pu_bacteria 3001119090 3001119972 496
103 3300044765 Ga0466970_0014400 Ga0466970_0014400_663_2195 497
104 3300053730 Ga0500645_000104 Ga0500645_000104_35738_37282 497
105 iso_pu_bacteria 2527291627 2528204098 497
106 iso_pu_bacteria 2527291629 2528214229 497
107 iso_pu_bacteria 2546825537 2546949168 497
108 iso_pu_bacteria 2576861822 2579748236 497
109 iso_pu_bacteria 2684623036 2686540871 497
110 iso_pu_bacteria 2773857924 2774863734 497
111 iso_pu_bacteria 637000116 637878914 497
112 3300006186 Ga0075369_10006930 Ga0075369_100069304 498
113 iso_pu_bacteria 2821268502 2821269058 498
114 iso_pu_bacteria 2956939328 2956942202 498
115 3300044765 Ga0466970_0050009 Ga0466970_0050009_413_1969 500
116 iso_pu_bacteria 2956939328 2956941614 500
117 3300050492 nmdc:mga0yw44_31079_c1 nmdc:mga0yw44_31079_c1_199_1764 502
118 3300044901 Ga0466960_0008281 Ga0466960_0008281_1452_3077 505
119 iso_pu_bacteria 2643221715 2644638884 505
120 iso_pu_bacteria 3001119090 3001121950 505
121 3300048921 Ga0496118_0026389 Ga0496118_0026389_2965_4611 506
122 3300048922 Ga0496119_0021761 Ga0496119_0021761_2750_4396 506
123 3300048923 Ga0496120_0003500 Ga0496120_0003500_9176_10822 506
124 3300048925 Ga0496122_0000020 Ga0496122_0000020_73593_75239 506
125 3300048926 Ga0496123_0000003 Ga0496123_0000003_288717_290363 506
126 3300048927 Ga0496124_0006123 Ga0496124_0006123_250_1896 506
127 3300048928 Ga0496125_0003785 Ga0496125_0003785_15512_17158 506
128 3300039437 Ga0436365_1215520 Ga0436365_1215520_14161_15831 507
129 3300041452 Ga0451793_0099924 Ga0451793_0099924_450_2030 507
130 iso_pu_bacteria 2773857763 2774400678 507
131 3300003792 Ga0055540_1000053 Ga0055540_1000053111 513
132 3300025303 Ga0209051_1000021 Ga0209051_1000021317 513

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02397

Bac_transf

Bacterial sugar transferase

368

557

0.97

PF13727

CoA_binding_3

CoA-binding domain

159

330

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
8g1n-assembly1.cif.gz_A structure of campylobacter concisus pglc i57m/q175m variant with modeled c-terminus 0.8505 318 507
8g1n-assembly2.cif.gz_B structure of campylobacter concisus pglc i57m/q175m variant with modeled c-terminus 0.8442 318 508
8e37-assembly4.cif.gz_D structure of campylobacter concisus wild-type semet pglc 0.8406 317 507
8e37-assembly4.cif.gz_D structure of campylobacter concisus wild-type semet pglc 0.8072 317 507
8g1n-assembly1.cif.gz_A structure of campylobacter concisus pglc i57m/q175m variant with modeled c-terminus 0.7805 318 507
ID Description Score Start End Superfamily
af_Q2G1K5_1_137_1.10.287.1260 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.7436 50 186 1.10.287.1260
af_Q2G1K5_1_137_1.10.287.1260 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.6961 50 186 1.10.287.1260
af_A0A0R0FQX0_42_200_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.6117 191 246 3.40.50.720
af_P71784_1_83_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.611 191 289 3.40.50.20
af_Q5AMQ8_2_470_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.5679 191 226 3.50.50.60
ID Description Score Start End GO Terms
AF-W4NBC7-F1-model_v4 Undecaprenyl-phosphate sugar phosphotransferase CspD 0.9615 318 513 GO:0016020
GO:0016780
AF-A0A356NA96-F1-model_v4 Bacterial sugar transferase domain-containing protein 0.9535 319 511 GO:0005886
GO:0016780
AF-A0A4D4KS71-F1-model_v4 Bacterial sugar transferase domain-containing protein 0.953 328 513 GO:0016780
AF-A0A5C6F533-F1-model_v4 UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase (EC 2.7.8.31) 0.9523 312 513 GO:0016020
GO:0089702
AF-W4NBC7-F1-model_v4 Undecaprenyl-phosphate sugar phosphotransferase CspD 0.9521 318 513 GO:0016020
GO:0016780

Feature Viewer

pLDDT pTM Quality
71.74 0.58 Medium
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Predicted Structure (AlphaFold2)

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