F153155

General Info

Members Datasets Scaffolds Average Seq Length
132 94 264 285

Family's Representative Sequence

Representative Sequence 3300028379|Ga0268266_10312421|Ga0268266_103124212
Length 323
Sequence MSGESTGARAAGTTRRESPRRGSFLSLTAVQIHLVDGTYELFRQYLAPRPGHLDDDGVEVGATRAVVSSMMTMLEEGATHLGVATDHVIESFRNDLWETYKNGDGIDPLLKTQFPLLEDALTALGVTVWAMVEFEADDALGAAAVVGADDARVDRVVICTPDKDMGQCVGGKVVQLDRRRDVLLDSEGVRDKFGVLPESIPDWLALVGDTADGFPGLPGFGAKTAAALLDRYRHIEDIPADPKAWNIVGVRGADRLAATLAAGRDVAALFKVLATLRIDAPVGVVDEWEWRGPTPELGDWCTRFGSPRLAERAAKLAAQRGFS

Samples

Sample ID Description Type Environment
1 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
4 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
5 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
6 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
7 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
8 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
9 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
10 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
11 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
12 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
15 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
16 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
17 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
22 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
32 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
44 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
45 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
46 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
47 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
48 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
49 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
50 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
51 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
52 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
53 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
54 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
55 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
56 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
57 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
58 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
59 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
60 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
61 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
62 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
63 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
64 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
65 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
66 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
73 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
74 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
75 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
76 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
77 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
78 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
79 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
80 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
81 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
82 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
83 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
84 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
85 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
86 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
87 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
88 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
89 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
90 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
91 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
92 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
93 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
94 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.82
Nodule 0
Rhizoplane 5.3
Rhizosphere 87.12
Stem 0
Stem Tuber 0
Unclassified 3.79

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0268266_10312421 3300028379 Bacteria 1469
2 Ga0070690_100204628 3300005330 Bacteria 1375
3 Ga0070675_100028451 3300005354 Bacteria 4498
4 Ga0070673_100129460 3300005364 Bacteria 2115
5 Ga0070706_100157035 3300005467 Bacteria 2123
6 Ga0070698_100016380 3300005471 Bacteria 7827
7 Ga0070698_100142194 3300005471 Bacteria 2350
8 Ga0070697_100327328 3300005536 Bacteria 1320
9 Ga0070697_100337953 3300005536 Unclassified 1299
10 Ga0070672_100289256 3300005543 Bacteria 1387
11 Ga0070672_100500440 3300005543 Bacteria 1051
12 Ga0070696_100300569 3300005546 Bacteria 1229
13 Ga0068861_100027609 3300005719 Bacteria 4137
14 Ga0068861_100357707 3300005719 Bacteria 1283
15 Ga0068860_100268618 3300005843 Bacteria 1664
16 Ga0081455_10068777 3300005937 Bacteria 2946
17 Ga0070717_10184892 3300006028 Bacteria 1818
18 Ga0075365_10052212 3300006038 Bacteria 2703
19 Ga0075363_100005550 3300006048 Bacteria 5625
20 Ga0075364_10338074 3300006051 Bacteria 1026
21 Ga0075367_10045676 3300006178 Bacteria 2571
22 Ga0075428_100037358 3300006844 Bacteria 5347
23 Ga0075428_100253801 3300006844 Bacteria 1895
24 Ga0075430_100071266 3300006846 Bacteria 2915
25 Ga0075431_100047366 3300006847 Bacteria 4432
26 Ga0075433_10009322 3300006852 Bacteria 7849
27 Ga0075434_100012694 3300006871 Bacteria 7990
28 Ga0075429_100006545 3300006880 Bacteria 10085
29 Ga0075435_100091438 3300007076 Bacteria 2511
30 Ga0114129_10304544 3300009147 Bacteria 2123
31 Ga0105237_10133506 3300009545 Bacteria 2477
32 Ga0105238_10114048 3300009551 Bacteria 2682
33 Ga0105249_10102414 3300009553 Bacteria 2695
34 Ga0157375_10102272 3300013308 Bacteria 2950
35 Ga0163163_10058110 3300014325 Bacteria 3824
36 Ga0157380_10219613 3300014326 Bacteria 1700
37 Ga0157380_10621888 3300014326 Bacteria 1072
38 Ga0207697_10072749 3300025315 Bacteria 1442
39 Ga0207684_10069776 3300025910 Bacteria 2986
40 Ga0207671_10335558 3300025914 Unclassified 1197
41 Ga0207681_10280436 3300025923 Bacteria 1312
42 Ga0207694_10208762 3300025924 Bacteria 1590
43 Ga0207650_10031769 3300025925 Bacteria 3815
44 Ga0207659_10054933 3300025926 Bacteria 2846
45 Ga0207668_10305788 3300025972 Bacteria 1314
46 Ga0207675_100173656 3300026118 Bacteria 2061
47 Ga0207675_100432157 3300026118 Unclassified 1302
48 Ga0207683_10006224 3300026121 Bacteria 10229
49 Ga0268265_10051168 3300028380 Bacteria 3117
50 Ga0268265_10243657 3300028380 Bacteria 1588
51 Ga0265319_1014523 3300028563 Bacteria 3087
52 Ga0265327_10001628 3300031251 Bacteria 27077
53 Ga0316576_10050288 3300031727 Bacteria 3031
54 Ga0316576_10122486 3300031727 Bacteria 1953
55 Ga0316578_10122468 3300031728 Bacteria 1564
56 Ga0307410_10306027 3300031852 Bacteria 1256
57 Ga0316574_0016657 3300035398 Bacteria 4287
58 Ga0316574_0033156 3300035398 Bacteria 3143
59 Ga0316574_0095065 3300035398 Bacteria 1904
60 Ga0373947_0022713 3300035725 Bacteria 3641
61 Ga0316582_0005652 3300036647 Bacteria 6471
62 Ga0316584_0034329 3300036712 Bacteria 3761
63 Ga0316584_0087848 3300036712 Bacteria 2327
64 Ga0316584_0213923 3300036712 Bacteria 1418
65 Ga0316584_0434455 3300036712 Bacteria 931
66 Ga0373925_0262784 3300037068 Bacteria 1387
67 Ga0451853_3313930 3300041512 Bacteria 1194
68 Ga0495582_0088001 3300046473 Bacteria 1730
69 Ga0495628_0440023 3300046516 Bacteria 948
70 Ga0495630_0214006 3300046517 Bacteria 1471
71 Ga0495658_0154594 3300046683 Bacteria 1411
72 Ga0495670_0195324 3300046691 Bacteria 1071
73 Ga0495672_0007825 3300047320 Bacteria 7982
74 Ga0495676_0069926 3300047321 Bacteria 2707
75 Ga0495684_0096988 3300047471 Bacteria 2231
76 Ga0496102_0122628 3300048905 Unclassified 2428
77 Ga0496104_0229351 3300048907 Bacteria 1769
78 Ga0496104_0276885 3300048907 Bacteria 1591
79 Ga0496104_0718733 3300048907 Bacteria 906
80 Ga0496109_0171533 3300048912 Unclassified 2035
81 Ga0496112_0026504 3300048915 Bacteria 5578
82 Ga0496112_0464028 3300048915 Bacteria 1204
83 Ga0501031_0166504 3300049568 Bacteria 1441
84 Ga0501034_0001191 3300049571 Bacteria 35783
85 Ga0501034_0008807 3300049571 Bacteria 10620
86 Ga0501034_0031849 3300049571 Bacteria 5356
87 Ga0501040_0051537 3300049576 Bacteria 2816
88 Ga0501040_0066634 3300049576 Bacteria 2481
89 Ga0501040_0139926 3300049576 Bacteria 1704
90 Ga0501042_0082380 3300049578 Bacteria 2306
91 Ga0501046_0044848 3300049580 Bacteria 3515
92 Ga0501047_0032075 3300049581 Bacteria 5070
93 Ga0501047_0087011 3300049581 Bacteria 3002
94 Ga0501068_0006100 3300049584 Bacteria 6628
95 Ga0501070_0015652 3300049586 Bacteria 6376
96 Ga0501071_0070013 3300049587 Bacteria 2555
97 Ga0501071_0111847 3300049587 Bacteria 2019
98 Ga0501072_0292783 3300049588 Bacteria 1294
99 Ga0501072_0473826 3300049588 Bacteria 991
100 Ga0501073_0000824 3300049589 Bacteria 22056
101 Ga0501073_0074363 3300049589 Bacteria 2366
102 Ga0501073_0288517 3300049589 Bacteria 1132
103 Ga0501075_0076251 3300049591 Bacteria 2536
104 Ga0501076_0059931 3300049592 Bacteria 3028
105 Ga0501076_0247836 3300049592 Bacteria 1457
106 Ga0501081_0061548 3300049743 Bacteria 2603
107 Ga0501081_0426185 3300049743 Bacteria 984
108 Ga0501045_0073483 3300049824 Bacteria 2518
109 Ga0501045_0490956 3300049824 Bacteria 912
110 nmdc:mga03n38_10602_c1 3300050490 Bacteria 3399
111 nmdc:mga00v17_23242_c1 3300050491 Bacteria 3585
112 nmdc:mga0yw44_192900_c1 3300050492 Bacteria 1344
113 nmdc:mga0yw44_415964_c1 3300050492 Bacteria 910
114 nmdc:mga0yw44_88492_c1 3300050492 Bacteria 1952
115 nmdc:mga05p37_105619_c1 3300050507 Bacteria 3464
116 nmdc:mga09592_249119_c1 3300050508 Bacteria 1539
117 nmdc:mga09592_8369_c1 3300050508 Bacteria 8406
118 nmdc:mga0qj67_213589_c1 3300050509 Bacteria 1566
119 nmdc:mga0qj67_338040_c1 3300050509 Bacteria 1218
120 nmdc:mga0qj67_45043_c1 3300050509 Bacteria 3480
121 nmdc:mga06r32_5266_c1 3300050510 Bacteria 11635
122 nmdc:mga0rr50_259464_c1 3300050513 Bacteria 1446
123 nmdc:mga0a205_26745_c1 3300050515 Bacteria 5505
124 Ga0495601_0056353 3300053077 Bacteria 2489
125 Ga0495612_0034800 3300053078 Bacteria 2040
126 Ga0501084_0065063 3300054114 Bacteria 3051
127 Ga0501084_0386081 3300054114 Bacteria 1183
128 Ga0501082_0147141 3300060353 Bacteria 2045
129 Ga0501082_0344916 3300060353 Bacteria 1298
130 Ga0501082_0365970 3300060353 Bacteria 1258
131 Ga0501082_0378110 3300060353 Bacteria 1236
132 Ga0530510_0179455 3300061734 Bacteria 1570
133 Ga0268266_10312421
134 Ga0070690_100204628
135 Ga0070675_100028451
136 Ga0070673_100129460
137 Ga0070706_100157035
138 Ga0070698_100016380
139 Ga0070698_100142194
140 Ga0070697_100327328
141 Ga0070697_100337953
142 Ga0070672_100289256
143 Ga0070672_100500440
144 Ga0070696_100300569
145 Ga0068861_100027609
146 Ga0068861_100357707
147 Ga0068860_100268618
148 Ga0081455_10068777
149 Ga0070717_10184892
150 Ga0075365_10052212
151 Ga0075363_100005550
152 Ga0075364_10338074
153 Ga0075367_10045676
154 Ga0075428_100037358
155 Ga0075428_100253801
156 Ga0075430_100071266
157 Ga0075431_100047366
158 Ga0075433_10009322
159 Ga0075434_100012694
160 Ga0075429_100006545
161 Ga0075435_100091438
162 Ga0114129_10304544
163 Ga0105237_10133506
164 Ga0105238_10114048
165 Ga0105249_10102414
166 Ga0157375_10102272
167 Ga0163163_10058110
168 Ga0157380_10219613
169 Ga0157380_10621888
170 Ga0207697_10072749
171 Ga0207684_10069776
172 Ga0207671_10335558
173 Ga0207681_10280436
174 Ga0207694_10208762
175 Ga0207650_10031769
176 Ga0207659_10054933
177 Ga0207668_10305788
178 Ga0207675_100173656
179 Ga0207675_100432157
180 Ga0207683_10006224
181 Ga0268265_10051168
182 Ga0268265_10243657
183 Ga0265319_1014523
184 Ga0265327_10001628
185 Ga0316576_10050288
186 Ga0316576_10122486
187 Ga0316578_10122468
188 Ga0307410_10306027
189 Ga0316574_0016657
190 Ga0316574_0033156
191 Ga0316574_0095065
192 Ga0373947_0022713
193 Ga0316582_0005652
194 Ga0316584_0034329
195 Ga0316584_0087848
196 Ga0316584_0213923
197 Ga0316584_0434455
198 Ga0373925_0262784
199 Ga0451853_3313930
200 Ga0495582_0088001
201 Ga0495628_0440023
202 Ga0495630_0214006
203 Ga0495658_0154594
204 Ga0495670_0195324
205 Ga0495672_0007825
206 Ga0495676_0069926
207 Ga0495684_0096988
208 Ga0496102_0122628
209 Ga0496104_0229351
210 Ga0496104_0276885
211 Ga0496104_0718733
212 Ga0496109_0171533
213 Ga0496112_0026504
214 Ga0496112_0464028
215 Ga0501031_0166504
216 Ga0501034_0001191
217 Ga0501034_0008807
218 Ga0501034_0031849
219 Ga0501040_0051537
220 Ga0501040_0066634
221 Ga0501040_0139926
222 Ga0501042_0082380
223 Ga0501046_0044848
224 Ga0501047_0032075
225 Ga0501047_0087011
226 Ga0501068_0006100
227 Ga0501070_0015652
228 Ga0501071_0070013
229 Ga0501071_0111847
230 Ga0501072_0292783
231 Ga0501072_0473826
232 Ga0501073_0000824
233 Ga0501073_0074363
234 Ga0501073_0288517
235 Ga0501075_0076251
236 Ga0501076_0059931
237 Ga0501076_0247836
238 Ga0501081_0061548
239 Ga0501081_0426185
240 Ga0501045_0073483
241 Ga0501045_0490956
242 nmdc:mga03n38_10602_c1
243 nmdc:mga00v17_23242_c1
244 nmdc:mga0yw44_192900_c1
245 nmdc:mga0yw44_415964_c1
246 nmdc:mga0yw44_88492_c1
247 nmdc:mga05p37_105619_c1
248 nmdc:mga09592_249119_c1
249 nmdc:mga09592_8369_c1
250 nmdc:mga0qj67_213589_c1
251 nmdc:mga0qj67_338040_c1
252 nmdc:mga0qj67_45043_c1
253 nmdc:mga06r32_5266_c1
254 nmdc:mga0rr50_259464_c1
255 nmdc:mga0a205_26745_c1
256 Ga0495601_0056353
257 Ga0495612_0034800
258 Ga0501084_0065063
259 Ga0501084_0386081
260 Ga0501082_0147141
261 Ga0501082_0344916
262 Ga0501082_0365970
263 Ga0501082_0378110
264 Ga0530510_0179455

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02739

5_3_exonuc_N

5'-3' exonuclease, N-terminal resolvase-like domain

31

194

0.91

PF01367

5_3_exonuc

5'-3' exonuclease, C-terminal SAM fold

195

296

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
3zde-assembly1.cif.gz_A potassium free structure of e. coli exoix 0.8622 2 261
3zd8-assembly2.cif.gz_B potassium bound structure of e. coli exoix in p1 0.8613 1 261
3zda-assembly1.cif.gz_A structure of e. coli exoix in complex with a fragment of the flap1 dna oligonucleotide, potassium and magnesium 0.8587 1 261
6c35-assembly1.cif.gz_A mycobacterium smegmatis flap endonuclease mutant d148n 0.8554 2 251
3zdd-assembly1.cif.gz_A-2 structure of e. coli exoix in complex with the palindromic 5ov6 oligonucleotide and potassium 0.8518 1 260
ID Description Score Start End Superfamily
af_P00582_2_172_3.40.50.1010 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.9205 3 166 3.40.50.1010
af_Q8I7W9_262_459_3.40.50.1010 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.8892 2 165 3.40.50.1010
af_A8MQG8_313_403_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.8865 170 250 1.10.150.20
af_P00582_2_172_3.40.50.1010 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.8745 3 166 3.40.50.1010
af_Q2FXN9_173_262_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.8651 168 258 1.10.150.20
ID Description Score Start End GO Terms
AF-A0A537H256-F1-model_v4 Flap endonuclease 0.991 1 172 GO:0003677
GO:0008409
GO:0017108
GO:0033567
AF-A0A2V8I4R1-F1-model_v4 Flap endonuclease 0.9908 1 147 GO:0003677
GO:0008409
GO:0017108
GO:0033567
AF-A0A7V8YLT2-F1-model_v4 Flap endonuclease 0.9898 1 205 GO:0003677
GO:0008409
GO:0017108
GO:0033567
AF-A0A538A1Q6-F1-model_v4 5'-3' exonuclease domain-containing protein 0.9886 1 260 GO:0003677
GO:0008409
GO:0016020
GO:0017108
GO:0033567
GO:0140359
AF-A0A7W1TWA1-F1-model_v4 Flap endonuclease 0.9863 47 260 GO:0003677
GO:0008409
GO:0017108
GO:0033567

Map