F152193

General Info

Members Datasets Scaffolds Average Seq Length
132 91 132 231

Family's Representative Sequence

Representative Sequence 3300005618|Ga0068864_100357170|Ga0068864_1003571702
Length 257
Sequence MSTGARILIIEDELPMRTVLSDTLRGSGYRILVASDGAVGLEKATSEKPDLILLDVMMPRLDGFALCAELRRLLNTAPVLMLTAKGRVEDRVKGLDAGADDYLVKPFSREELLARVRALLRRTRRDTRELNELRLGSVRVDFVAQRAWRGDEPLHLTAKEIGVLHLLAAAEGEVVSRDRFLDVVWGYASFPTTRTVDKHIVSLRSKIEPNPASPRWIHTVHGFGYRLEVEGAPKVSVAEVTNPSQPTRRNAANTTAQ

Samples

Sample ID Description Type Environment
1 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
2 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
3 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
4 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
34 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
47 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
50 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
51 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
52 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
53 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
54 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
55 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
56 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
57 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
58 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
59 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
60 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
61 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
62 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
63 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
64 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
65 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
66 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
67 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
68 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
69 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
70 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
71 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
72 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
73 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
74 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
75 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
76 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
77 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
78 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
79 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
80 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
81 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
82 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
84 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
86 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
87 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
88 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
89 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
90 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
91 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.52
Nodule 0
Rhizoplane 2.27
Rhizosphere 96.21
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070670_100043645 3300005331 Bacteria 3854
2 Ga0070689_100002226 3300005340 Bacteria 12585
3 Ga0070689_100049411 3300005340 Bacteria 3247
4 Ga0070675_100707280 3300005354 Unclassified 918
5 Ga0070673_100587147 3300005364 Bacteria 1015
6 Ga0070714_100007927 3300005435 Bacteria 8273
7 Ga0070713_100686805 3300005436 Bacteria 977
8 Ga0070711_100280622 3300005439 Bacteria 1318
9 Ga0070708_100015714 3300005445 Bacteria 6256
10 Ga0070681_10031074 3300005458 Bacteria 5359
11 Ga0070684_100116020 3300005535 Bacteria 2405
12 Ga0070686_100694666 3300005544 Bacteria 811
13 Ga0068855_100049331 3300005563 Bacteria 4965
14 Ga0068855_100137111 3300005563 Bacteria 2791
15 Ga0068855_100251232 3300005563 Bacteria 1972
16 Ga0068855_100333290 3300005563 Bacteria 1675
17 Ga0068856_100008376 3300005614 Bacteria 10076
18 Ga0068856_101248127 3300005614 Bacteria 759
19 Ga0068859_101076647 3300005617 Bacteria 884
20 Ga0068864_100357170 3300005618 Bacteria 1380
21 Ga0068863_101059562 3300005841 Bacteria 815
22 Ga0068862_100946372 3300005844 Unclassified 849
23 Ga0075428_100002580 3300006844 Bacteria 19675
24 Ga0075430_100196754 3300006846 Bacteria 1674
25 Ga0075431_100089059 3300006847 Bacteria 3186
26 Ga0075433_10648405 3300006852 Bacteria 926
27 Ga0075429_100359884 3300006880 Bacteria 1274
28 Ga0075436_100171601 3300006914 Bacteria 1531
29 Ga0097620_101076363 3300006931 Bacteria 884
30 Ga0105240_10000661 3300009093 Bacteria 63392
31 Ga0105240_10008536 3300009093 Bacteria 14639
32 Ga0105240_10022046 3300009093 Bacteria 8455
33 Ga0111539_10036166 3300009094 Bacteria 5973
34 Ga0111539_10312588 3300009094 Bacteria 1829
35 Ga0114129_10377866 3300009147 Bacteria 1872
36 Ga0105241_10597084 3300009174 Bacteria 997
37 Ga0105237_10286831 3300009545 Bacteria 1649
38 Ga0105238_10124699 3300009551 Bacteria 2555
39 Ga0105238_10471260 3300009551 Bacteria 1254
40 Ga0157370_10558863 3300013104 Bacteria 1049
41 Ga0157372_10148383 3300013307 Bacteria 2705
42 Ga0157375_10000025 3300013308 Bacteria 224384
43 Ga0207680_10135712 3300025903 Bacteria 1626
44 Ga0207707_10031222 3300025912 Bacteria 4660
45 Ga0207695_10000738 3300025913 Bacteria 63394
46 Ga0207695_10043536 3300025913 Bacteria 4784
47 Ga0207695_10052627 3300025913 Bacteria 4263
48 Ga0207662_10044851 3300025918 Bacteria 2612
49 Ga0207694_10046050 3300025924 Bacteria 3371
50 Ga0207694_10473561 3300025924 Bacteria 1047
51 Ga0207650_10047217 3300025925 Bacteria 3173
52 Ga0207670_10020450 3300025936 Bacteria 4067
53 Ga0207670_10351768 3300025936 Bacteria 1167
54 Ga0207667_10040172 3300025949 Bacteria 4982
55 Ga0207667_10069101 3300025949 Bacteria 3677
56 Ga0207667_10550333 3300025949 Bacteria 1167
57 Ga0207702_10045951 3300026078 Bacteria 3674
58 Ga0207641_10225168 3300026088 Bacteria 1741
59 Ga0207674_10562080 3300026116 Bacteria 1102
60 Ga0207675_100723213 3300026118 Bacteria 1005
61 Ga0265337_1014123 3300028556 Bacteria 2656
62 Ga0265337_1041292 3300028556 Bacteria 1327
63 Ga0265326_10051070 3300028558 Bacteria 1171
64 Ga0265338_10000160 3300028800 Bacteria 122713
65 Ga0265338_10000310 3300028800 Bacteria 88170
66 Ga0265338_10000604 3300028800 Bacteria 63073
67 Ga0265338_10003669 3300028800 Bacteria 21398
68 Ga0265338_10015138 3300028800 Bacteria 8507
69 Ga0265338_10015141 3300028800 Bacteria 8507
70 Ga0265338_10022682 3300028800 Bacteria 6485
71 Ga0265338_10132125 3300028800 Bacteria 1969
72 Ga0265324_10000421 3300029957 Bacteria 30438
73 Ga0265324_10001486 3300029957 Bacteria 13301
74 Ga0265320_10000262 3300031240 Bacteria 43479
75 Ga0265320_10000761 3300031240 Bacteria 24724
76 Ga0265325_10024909 3300031241 Bacteria 3251
77 Ga0265329_10000636 3300031242 Bacteria 17909
78 Ga0265331_10191098 3300031250 Bacteria 923
79 Ga0265327_10001286 3300031251 Bacteria 32988
80 Ga0265316_10064778 3300031344 Bacteria 2831
81 Ga0265314_10000340 3300031711 Bacteria 65215
82 Ga0265342_10206969 3300031712 Bacteria 1063
83 Ga0373956_0013331 3300035119 Bacteria 3419
84 Ga0373927_0401149 3300035695 Bacteria 905
85 Ga0451798_0251731 3300041458 Bacteria 869
86 Ga0451577_0365599 3300042876 Bacteria 1309
87 Ga0451577_0476087 3300042876 Bacteria 1134
88 Ga0453684_0884240 3300044712 Bacteria 958
89 Ga0451576_0055708 3300045051 Bacteria 4135
90 Ga0451576_0067608 3300045051 Bacteria 3720
91 Ga0451576_0067718 3300045051 Bacteria 3717
92 Ga0451576_0076996 3300045051 Bacteria 3471
93 Ga0451576_0156949 3300045051 Bacteria 2374
94 Ga0451576_0346108 3300045051 Bacteria 1556
95 Ga0451576_0723624 3300045051 Bacteria 1046
96 Ga0466958_0428711 3300045836 Bacteria 855
97 Ga0495592_0226687 3300046454 Bacteria 1246
98 Ga0495641_0028857 3300046461 Unclassified 2680
99 Ga0495653_0121613 3300046463 Bacteria 1860
100 Ga0495662_0018658 3300046476 Unclassified 3358
101 Ga0495618_0384823 3300046514 Bacteria 860
102 Ga0495630_0000135 3300046517 Bacteria 58009
103 Ga0495630_0030528 3300046517 Bacteria 4010
104 Ga0495652_0147310 3300046529 Bacteria 1844
105 Ga0495640_0147502 3300046533 Bacteria 1513
106 Ga0495586_0000033 3300046535 Bacteria 89808
107 Ga0495586_0025737 3300046535 Bacteria 3149
108 Ga0495586_0113949 3300046535 Bacteria 1506
109 Ga0495645_0126673 3300046543 Bacteria 1794
110 Ga0495645_0181873 3300046543 Bacteria 1440
111 Ga0495634_0257220 3300046642 Bacteria 1066
112 Ga0495599_0062631 3300046678 Bacteria 2324
113 Ga0495599_0072222 3300046678 Bacteria 2154
114 Ga0495613_0277426 3300046689 Bacteria 1165
115 Ga0495674_0001612 3300047319 Bacteria 22109
116 Ga0495674_0094567 3300047319 Bacteria 2549
117 Ga0495676_0011983 3300047321 Bacteria 7822
118 Ga0496107_0130880 3300048910 Bacteria 1852
119 Ga0496115_0000900 3300048918 Bacteria 21567
120 Ga0501034_0161972 3300049571 Bacteria 2208
121 Ga0501257_055234 3300049686 Bacteria 996
122 Ga0501035_0031975 3300049822 Bacteria 4792
123 Ga0501044_0041996 3300049823 Bacteria 4760
124 Ga0501044_0744908 3300049823 Bacteria 862
125 nmdc:mga05p37_1037886_c1 3300050507 Bacteria 866
126 nmdc:mga0qj67_257577_c1 3300050509 Bacteria 1415
127 nmdc:mga06r32_185466_c1 3300050510 Bacteria 2067
128 nmdc:mga06r32_194042_c1 3300050510 Bacteria 2018
129 nmdc:mga08y16_198961_c1 3300050511 Bacteria 2077
130 nmdc:mga08y16_246504_c1 3300050511 Bacteria 1846
131 Ga0500594_0078956 3300053118 Bacteria 981
132 Ga0500616_0211115 3300053153 Bacteria 853

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005439 Ga0070711_100280622 Ga0070711_1002806222 214
2 3300025913 Ga0207695_10043536 Ga0207695_100435362 214
3 3300028800 Ga0265338_10000604 Ga0265338_1000060434 215
4 3300031240 Ga0265320_10000262 Ga0265320_1000026224 215
5 3300028800 Ga0265338_10003669 Ga0265338_100036697 217
6 3300049822 Ga0501035_0031975 Ga0501035_0031975_1540_2217 225
7 3300049823 Ga0501044_0041996 Ga0501044_0041996_3376_4053 225
8 3300005340 Ga0070689_100049411 Ga0070689_1000494112 226
9 3300005435 Ga0070714_100007927 Ga0070714_1000079277 226
10 3300005436 Ga0070713_100686805 Ga0070713_1006868051 226
11 3300005544 Ga0070686_100694666 Ga0070686_1006946661 226
12 3300005563 Ga0068855_100049331 Ga0068855_1000493312 226
13 3300005563 Ga0068855_100333290 Ga0068855_1003332902 226
14 3300005841 Ga0068863_101059562 Ga0068863_1010595621 226
15 3300009093 Ga0105240_10008536 Ga0105240_100085369 226
16 3300009093 Ga0105240_10022046 Ga0105240_100220461 226
17 3300009174 Ga0105241_10597084 Ga0105241_105970842 226
18 3300009545 Ga0105237_10286831 Ga0105237_102868312 226
19 3300013104 Ga0157370_10558863 Ga0157370_105588631 226
20 3300025913 Ga0207695_10052627 Ga0207695_100526271 226
21 3300025949 Ga0207667_10040172 Ga0207667_100401722 226
22 3300025949 Ga0207667_10550333 Ga0207667_105503331 226
23 3300026088 Ga0207641_10225168 Ga0207641_102251682 226
24 3300031250 Ga0265331_10191098 Ga0265331_101910982 226
25 3300031251 Ga0265327_10001286 Ga0265327_1000128624 226
26 3300035695 Ga0373927_0401149 Ga0373927_0401149_53_733 226
27 3300041458 Ga0451798_0251731 Ga0451798_0251731_167_847 226
28 3300042876 Ga0451577_0365599 Ga0451577_0365599_241_921 226
29 3300044712 Ga0453684_0884240 Ga0453684_0884240_67_747 226
30 3300045051 Ga0451576_0067718 Ga0451576_0067718_962_1642 226
31 3300045051 Ga0451576_0723624 Ga0451576_0723624_20_700 226
32 3300046535 Ga0495586_0025737 Ga0495586_0025737_1240_1920 226
33 3300046543 Ga0495645_0126673 Ga0495645_0126673_882_1562 226
34 3300046678 Ga0495599_0062631 Ga0495599_0062631_1458_2138 226
35 3300049571 Ga0501034_0161972 Ga0501034_0161972_555_1235 226
36 3300053153 Ga0500616_0211115 Ga0500616_0211115_101_781 226
37 3300005614 Ga0068856_100008376 Ga0068856_1000083763 227
38 3300025924 Ga0207694_10046050 Ga0207694_100460502 227
39 3300026078 Ga0207702_10045951 Ga0207702_100459512 227
40 3300028800 Ga0265338_10000160 Ga0265338_1000016056 227
41 3300028800 Ga0265338_10000310 Ga0265338_1000031060 227
42 3300028800 Ga0265338_10022682 Ga0265338_100226822 227
43 3300029957 Ga0265324_10001486 Ga0265324_100014867 227
44 3300031712 Ga0265342_10206969 Ga0265342_102069692 227
45 3300045836 Ga0466958_0428711 Ga0466958_0428711_60_743 227
46 3300048910 Ga0496107_0130880 Ga0496107_0130880_794_1477 227
47 3300048918 Ga0496115_0000900 Ga0496115_0000900_160_843 227
48 3300005364 Ga0070673_100587147 Ga0070673_1005871471 228
49 3300005458 Ga0070681_10031074 Ga0070681_100310743 228
50 3300005535 Ga0070684_100116020 Ga0070684_1001160202 228
51 3300005563 Ga0068855_100251232 Ga0068855_1002512322 228
52 3300005614 Ga0068856_101248127 Ga0068856_1012481271 228
53 3300009551 Ga0105238_10471260 Ga0105238_104712601 228
54 3300013307 Ga0157372_10148383 Ga0157372_101483832 228
55 3300025912 Ga0207707_10031222 Ga0207707_100312222 228
56 3300025924 Ga0207694_10473561 Ga0207694_104735611 228
57 3300046517 Ga0495630_0030528 Ga0495630_0030528_3150_3836 228
58 3300049686 Ga0501257_055234 Ga0501257_055234_217_903 228
59 3300005445 Ga0070708_100015714 Ga0070708_1000157143 229
60 3300006847 Ga0075431_100089059 Ga0075431_1000890593 229
61 3300006852 Ga0075433_10648405 Ga0075433_106484051 229
62 3300009147 Ga0114129_10377866 Ga0114129_103778662 229
63 3300028800 Ga0265338_10015141 Ga0265338_100151413 229
64 3300028800 Ga0265338_10132125 Ga0265338_101321252 229
65 3300045051 Ga0451576_0156949 Ga0451576_0156949_1333_2031 229
66 3300046454 Ga0495592_0226687 Ga0495592_0226687_442_1131 229
67 3300046463 Ga0495653_0121613 Ga0495653_0121613_833_1522 229
68 3300046529 Ga0495652_0147310 Ga0495652_0147310_396_1085 229
69 3300046535 Ga0495586_0113949 Ga0495586_0113949_647_1336 229
70 3300046543 Ga0495645_0181873 Ga0495645_0181873_107_796 229
71 3300046642 Ga0495634_0257220 Ga0495634_0257220_249_938 229
72 3300046678 Ga0495599_0072222 Ga0495599_0072222_1087_1776 229
73 3300047319 Ga0495674_0094567 Ga0495674_0094567_1531_2220 229
74 3300049823 Ga0501044_0744908 Ga0501044_0744908_18_716 229
75 3300050507 nmdc:mga05p37_1037886_c1 nmdc:mga05p37_1037886_c1_25_717 229
76 3300050510 nmdc:mga06r32_185466_c1 nmdc:mga06r32_185466_c1_243_932 229
77 3300005340 Ga0070689_100002226 Ga0070689_1000022265 230
78 3300006914 Ga0075436_100171601 Ga0075436_1001716012 230
79 3300009094 Ga0111539_10312588 Ga0111539_103125882 230
80 3300009551 Ga0105238_10124699 Ga0105238_101246992 230
81 3300013308 Ga0157375_10000025 Ga0157375_1000002563 230
82 3300025903 Ga0207680_10135712 Ga0207680_101357122 230
83 3300025936 Ga0207670_10020450 Ga0207670_100204503 230
84 3300026116 Ga0207674_10562080 Ga0207674_105620802 230
85 3300028558 Ga0265326_10051070 Ga0265326_100510701 230
86 3300028800 Ga0265338_10015138 Ga0265338_100151387 230
87 3300029957 Ga0265324_10000421 Ga0265324_1000042114 230
88 3300031241 Ga0265325_10024909 Ga0265325_100249092 230
89 3300045051 Ga0451576_0055708 Ga0451576_0055708_2360_3052 230
90 3300046461 Ga0495641_0028857 Ga0495641_0028857_1556_2248 230
91 3300046476 Ga0495662_0018658 Ga0495662_0018658_845_1537 230
92 3300046514 Ga0495618_0384823 Ga0495618_0384823_143_835 230
93 3300046517 Ga0495630_0000135 Ga0495630_0000135_15097_15789 230
94 3300046533 Ga0495640_0147502 Ga0495640_0147502_486_1178 230
95 3300046535 Ga0495586_0000033 Ga0495586_0000033_44897_45589 230
96 3300047319 Ga0495674_0001612 Ga0495674_0001612_7054_7746 230
97 3300047321 Ga0495676_0011983 Ga0495676_0011983_5961_6653 230
98 3300050511 nmdc:mga08y16_246504_c1 nmdc:mga08y16_246504_c1_953_1645 230
99 3300006846 Ga0075430_100196754 Ga0075430_1001967542 231
100 3300025936 Ga0207670_10351768 Ga0207670_103517682 231
101 3300026118 Ga0207675_100723213 Ga0207675_1007232131 231
102 3300045051 Ga0451576_0346108 Ga0451576_0346108_776_1486 231
103 3300050509 nmdc:mga0qj67_257577_c1 nmdc:mga0qj67_257577_c1_452_1153 231
104 3300050510 nmdc:mga06r32_194042_c1 nmdc:mga06r32_194042_c1_370_1071 231
105 3300005617 Ga0068859_101076647 Ga0068859_1010766471 232
106 3300006844 Ga0075428_100002580 Ga0075428_10000258016 232
107 3300006880 Ga0075429_100359884 Ga0075429_1003598842 232
108 3300006931 Ga0097620_101076363 Ga0097620_1010763631 232
109 3300009094 Ga0111539_10036166 Ga0111539_100361662 232
110 3300028556 Ga0265337_1041292 Ga0265337_10412921 232
111 3300031240 Ga0265320_10000761 Ga0265320_100007612 232
112 3300035119 Ga0373956_0013331 Ga0373956_0013331_844_1560 232
113 3300045051 Ga0451576_0067608 Ga0451576_0067608_1701_2399 232
114 3300046689 Ga0495613_0277426 Ga0495613_0277426_326_1042 232
115 3300050511 nmdc:mga08y16_198961_c1 nmdc:mga08y16_198961_c1_507_1205 232
116 3300005331 Ga0070670_100043645 Ga0070670_1000436453 233
117 3300005354 Ga0070675_100707280 Ga0070675_1007072801 233
118 3300005563 Ga0068855_100137111 Ga0068855_1001371112 233
119 3300005618 Ga0068864_100357170 Ga0068864_1003571702 233
120 3300005844 Ga0068862_100946372 Ga0068862_1009463721 233
121 3300009093 Ga0105240_10000661 Ga0105240_1000066129 233
122 3300025913 Ga0207695_10000738 Ga0207695_1000073828 233
123 3300025918 Ga0207662_10044851 Ga0207662_100448512 233
124 3300025925 Ga0207650_10047217 Ga0207650_100472171 233
125 3300025949 Ga0207667_10069101 Ga0207667_100691012 233
126 3300028556 Ga0265337_1014123 Ga0265337_10141231 233
127 3300031242 Ga0265329_10000636 Ga0265329_1000063614 233
128 3300031344 Ga0265316_10064778 Ga0265316_100647781 233
129 3300031711 Ga0265314_10000340 Ga0265314_1000034017 233
130 3300042876 Ga0451577_0476087 Ga0451577_0476087_149_886 233
131 3300045051 Ga0451576_0076996 Ga0451576_0076996_350_1072 233
132 3300053118 Ga0500594_0078956 Ga0500594_0078956_136_873 233

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

7

117

0.99

PF00486

Trans_reg_C

Transcriptional regulatory protein, C terminal

151

227

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
2a9r-assembly1.cif.gz_A-2 rr02-rec phosphate in the active site 0.9896 6 122
1nxt-assembly1.cif.gz_A-2 micarec ph 4.0 0.9894 6 122
8fk2-assembly1.cif.gz_B the n-terminal vicr from streptococcus mutans 0.9819 5 124
1nxx-assembly1.cif.gz_A-2 micarec ph 5.5 0.9815 6 122
1nxo-assembly1.cif.gz_A-2 micarec ph7.0 0.9774 6 124
ID Description Score Start End Superfamily
af_O07776_22_102_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9919 4 84 3.40.50.2300
af_P9WGM1_5_87_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9909 3 81 3.40.50.2300
af_Q2FXN6_3_86_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9825 6 86 3.40.50.2300
af_O07776_22_102_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9799 4 84 3.40.50.2300
af_Q9KJN4_1_80_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9783 5 81 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A7V0Y2J7-F1-model_v4 Response regulator 0.8963 3 138 GO:0000160
GO:0016791
AF-A0A349LUR2-F1-model_v4 DNA-binding response regulator 0.8492 1 230 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A6B1I0J4-F1-model_v4 Response regulator transcription factor 0.8426 5 149 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A3M4S2R6-F1-model_v4 deleted 0.8361 3 231
AF-A0A6B1I0J4-F1-model_v4 Response regulator transcription factor 0.8258 5 149 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993

Feature Viewer

pLDDT pTM Quality
84.1 0.6 Medium
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Predicted Structure (AlphaFold2)

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