F148230

General Info

Members Datasets Scaffolds Average Seq Length
131 89 131 331

Family's Representative Sequence

Representative Sequence 3300005365|Ga0070688_100150778|Ga0070688_1001507782
Length 354
Sequence MTASPVTFVTSRVRPEQVREASLVVIXXXXVAFFATQINGYLSGTTFTRISASFAIVAVLAVGQTLVVLTRNVDLSVGSIVGLIAYGVGTLLGNFQDLPPLLVIVLCLVFGGVLGSINGVIVSWGRVPAIVTTLGTLAIFRVLLVELSGSKTVTTDSLPAWVVDLPRVNLLTIGTLDIRPLVVIALAIAVVFQLGLRYLPFGRRLFAIGSNPEGASLVGMPVKRDVFLAFTLSGALAGLAGFMFLSRFGNITVAAGLGLELQAVAAVVVGGVNIFGGIGSIGGAVLGAFLIDLLSQSLTRMEAVSEFTRDALLGLLILLAVASDSVILSRLRSGWQSARAREMARREAEGAVLG

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
13 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
14 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
15 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
16 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
17 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
18 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
19 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
20 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
23 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
33 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
34 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
35 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
36 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
37 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
38 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
39 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
40 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
41 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
42 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
43 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
44 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
45 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
46 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
47 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
48 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
49 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
50 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
51 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
52 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
53 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
54 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
55 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
56 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
57 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
58 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
59 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
60 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
61 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
62 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
63 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
64 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
76 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
77 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
78 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
79 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
80 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
82 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
83 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
84 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
85 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
86 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
87 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
88 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
89 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.29
Nodule 0
Rhizoplane 15.27
Rhizosphere 79.39
Stem 0
Stem Tuber 0
Unclassified 3.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10053194 3300003323 Bacteria 1752
2 Ga0070683_100121107 3300005329 Bacteria 2472
3 Ga0070682_100135632 3300005337 Bacteria 1671
4 Ga0070688_100150778 3300005365 Bacteria 1589
5 Ga0070709_10113657 3300005434 Bacteria 1824
6 Ga0070708_100082434 3300005445 Bacteria 2913
7 Ga0070708_100395127 3300005445 Unclassified 1304
8 Ga0070662_100047820 3300005457 Bacteria 3079
9 Ga0070706_100004977 3300005467 Bacteria 12722
10 Ga0070706_100011658 3300005467 Bacteria 8165
11 Ga0070707_100002721 3300005468 Bacteria 16812
12 Ga0070707_100005587 3300005468 Bacteria 11750
13 Ga0070707_100012560 3300005468 Bacteria 7910
14 Ga0070698_100000090 3300005471 Bacteria 71889
15 Ga0070698_100081170 3300005471 Bacteria 3237
16 Ga0070699_100074935 3300005518 Bacteria 2945
17 Ga0070699_100187007 3300005518 Bacteria 1839
18 Ga0070696_100023651 3300005546 Bacteria 4176
19 Ga0068856_100202543 3300005614 Bacteria 1999
20 Ga0068856_100349154 3300005614 Bacteria 1498
21 Ga0068861_100057832 3300005719 Bacteria 2963
22 Ga0081455_10016356 3300005937 Bacteria 7166
23 Ga0081455_10033151 3300005937 Bacteria 4645
24 Ga0081455_10041859 3300005937 Bacteria 4024
25 Ga0081455_10110645 3300005937 Bacteria 2183
26 Ga0081455_10172889 3300005937 Bacteria 1643
27 Ga0075365_10171180 3300006038 Bacteria 1516
28 Ga0075430_100119687 3300006846 Bacteria 2195
29 Ga0075433_10228722 3300006852 Bacteria 1652
30 Ga0075435_100056584 3300007076 Bacteria 3171
31 Ga0111539_10044423 3300009094 Bacteria 5323
32 Ga0111539_10492040 3300009094 Unclassified 1428
33 Ga0114129_10125332 3300009147 Bacteria 3532
34 Ga0114129_10880020 3300009147 Unclassified 1136
35 Ga0105242_10011058 3300009176 Bacteria 6934
36 Ga0207684_10003039 3300025910 Bacteria 16623
37 Ga0207684_10006787 3300025910 Bacteria 10383
38 Ga0207684_10068096 3300025910 Bacteria 3026
39 Ga0207646_10000435 3300025922 Bacteria 55844
40 Ga0207646_10003848 3300025922 Bacteria 16666
41 Ga0207659_10304507 3300025926 Bacteria 1310
42 Ga0207644_10094164 3300025931 Bacteria 2237
43 Ga0207706_10130386 3300025933 Bacteria 2211
44 Ga0207661_10145069 3300025944 Bacteria 2047
45 Ga0207708_10038191 3300026075 Bacteria 3657
46 Ga0207702_10186666 3300026078 Bacteria 1912
47 Ga0207675_100062152 3300026118 Bacteria 3487
48 Ga0207428_10072342 3300027907 Bacteria 2707
49 Ga0265318_10026612 3300028577 Bacteria 2277
50 Ga0316576_10057564 3300031727 Bacteria 2840
51 Ga0307409_100117301 3300031995 Bacteria 2246
52 Ga0307409_100237506 3300031995 Bacteria 1657
53 Ga0307416_100025031 3300032002 Bacteria 4368
54 Ga0307415_100000613 3300032126 Bacteria 15603
55 Ga0316574_0045580 3300035398 Bacteria 2716
56 Ga0373927_0000030 3300035695 Bacteria 107610
57 Ga0373925_0089474 3300037068 Bacteria 2352
58 Ga0395900_0022940 3300037418 Bacteria 6386
59 Ga0395900_0030451 3300037418 Bacteria 5542
60 Ga0395898_0006360 3300037466 Bacteria 12615
61 Ga0395905_0004079 3300037471 Bacteria 15313
62 Ga0395905_0391969 3300037471 Bacteria 1283
63 Ga0395901_0015947 3300038443 Bacteria 7653
64 Ga0395901_0041747 3300038443 Bacteria 4755
65 Ga0395901_0053435 3300038443 Bacteria 4197
66 Ga0400489_19520 3300039093 Bacteria 2080
67 Ga0436365_0443047 3300039437 Bacteria 2764
68 Ga0451802_0689584 3300041460 Bacteria 1020
69 Ga0451853_1263361 3300041512 Bacteria 2769
70 Ga0466967_0003515 3300045976 Bacteria 10244
71 Ga0466967_0212222 3300045976 Bacteria 1836
72 Ga0466967_0225457 3300045976 Bacteria 1782
73 Ga0495629_0055790 3300046459 Bacteria 2763
74 Ga0495652_0136490 3300046529 Bacteria 1935
75 Ga0495624_0213087 3300046690 Bacteria 1171
76 Ga0496101_0007296 3300048904 Bacteria 7154
77 Ga0496101_0019675 3300048904 Bacteria 4613
78 Ga0496101_0099780 3300048904 Bacteria 2171
79 Ga0496102_0058082 3300048905 Bacteria 3534
80 Ga0496102_0133864 3300048905 Bacteria 2322
81 Ga0496103_0035483 3300048906 Bacteria 3053
82 Ga0496104_0067631 3300048907 Bacteria 3394
83 Ga0496106_0002227 3300048909 Bacteria 14457
84 Ga0496108_0011892 3300048911 Bacteria 7080
85 Ga0496108_0022681 3300048911 Bacteria 5163
86 Ga0496109_0062259 3300048912 Bacteria 3412
87 Ga0496109_0231503 3300048912 Bacteria 1738
88 Ga0496110_0010793 3300048913 Bacteria 7445
89 Ga0496110_0095088 3300048913 Bacteria 2668
90 Ga0496112_0176639 3300048915 Bacteria 2100
91 Ga0496113_0050295 3300048916 Bacteria 3107
92 Ga0496113_0278055 3300048916 Bacteria 1338
93 Ga0496114_0008120 3300048917 Bacteria 8317
94 Ga0496114_0097145 3300048917 Bacteria 2509
95 Ga0501031_0347180 3300049568 Bacteria 961
96 Ga0501032_0025524 3300049569 Bacteria 4073
97 Ga0501032_0167987 3300049569 Bacteria 1439
98 Ga0501033_0082183 3300049570 Bacteria 2362
99 Ga0501034_0059731 3300049571 Bacteria 3830
100 Ga0501034_0221879 3300049571 Bacteria 1842
101 Ga0501037_0018695 3300049573 Bacteria 5107
102 Ga0501038_0067080 3300049574 Bacteria 3053
103 Ga0501038_0088966 3300049574 Bacteria 2591
104 Ga0501039_0054766 3300049575 Bacteria 3088
105 Ga0501042_0171814 3300049578 Bacteria 1564
106 Ga0501043_0017451 3300049579 Bacteria 5626
107 Ga0501047_0038335 3300049581 Bacteria 4637
108 Ga0501047_0040864 3300049581 Bacteria 4484
109 Ga0501048_0186561 3300049582 Bacteria 1470
110 Ga0501068_0170993 3300049584 Bacteria 1371
111 Ga0501070_0018647 3300049586 Bacteria 5821
112 Ga0501070_0020350 3300049586 Bacteria 5567
113 Ga0501073_0017781 3300049589 Bacteria 5146
114 Ga0501074_0023093 3300049590 Bacteria 4523
115 Ga0501080_0102554 3300049742 Bacteria 2654
116 Ga0501080_0342266 3300049742 Bacteria 1351
117 Ga0501035_0040201 3300049822 Bacteria 4228
118 Ga0501044_0004438 3300049823 Bacteria 15700
119 Ga0501044_0054808 3300049823 Bacteria 4097
120 Ga0501044_0121313 3300049823 Bacteria 2615
121 Ga0501044_0260217 3300049823 Bacteria 1673
122 Ga0501044_0319223 3300049823 Bacteria 1478
123 nmdc:mga03683_30849_c1 3300050489 Bacteria 2147
124 nmdc:mga05p37_427600_c1 3300050507 Bacteria 1539
125 nmdc:mga08y16_497368_c1 3300050511 Bacteria 1239
126 nmdc:mga0n895_31257_c1 3300050512 Bacteria 5096
127 nmdc:mga0rr50_106211_c1 3300050513 Bacteria 2215
128 Ga0495619_0024523 3300053085 Bacteria 3869
129 Ga0495619_0059775 3300053085 Bacteria 2532
130 Ga0500568_0000474 3300053139 Bacteria 29720
131 Ga0530510_0233753 3300061734 Bacteria 1368

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049568 Ga0501031_0347180 Ga0501031_0347180_18_935 249
2 3300041460 Ga0451802_0689584 Ga0451802_0689584_168_980 258
3 3300028577 Ga0265318_10026612 Ga0265318_100266122 281
4 3300037471 Ga0395905_0391969 Ga0395905_0391969_131_1180 288
5 3300053085 Ga0495619_0024523 Ga0495619_0024523_168_1196 290
6 3300048917 Ga0496114_0097145 Ga0496114_0097145_1213_2205 293
7 3300005518 Ga0070699_100074935 Ga0070699_1000749353 295
8 3300041512 Ga0451853_1263361 Ga0451853_1263361_1482_2510 295
9 3300025910 Ga0207684_10068096 Ga0207684_100680962 297
10 3300039437 Ga0436365_0443047 Ga0436365_0443047_664_1659 298
11 3300046690 Ga0495624_0213087 Ga0495624_0213087_41_1057 300
12 3300048913 Ga0496110_0095088 Ga0496110_0095088_1530_2558 300
13 3300048915 Ga0496112_0176639 Ga0496112_0176639_528_1556 300
14 3300048907 Ga0496104_0067631 Ga0496104_0067631_1145_2173 301
15 3300048911 Ga0496108_0011892 Ga0496108_0011892_4937_5965 301
16 3300048912 Ga0496109_0231503 Ga0496109_0231503_535_1563 301
17 3300048916 Ga0496113_0050295 Ga0496113_0050295_1072_2100 301
18 3300046529 Ga0495652_0136490 Ga0495652_0136490_125_1153 302
19 3300061734 Ga0530510_0233753 Ga0530510_0233753_172_1254 304
20 3300005614 Ga0068856_100349154 Ga0068856_1003491542 305
21 3300009147 Ga0114129_10125332 Ga0114129_101253323 305
22 3300009176 Ga0105242_10011058 Ga0105242_100110586 305
23 3300050507 nmdc:mga05p37_427600_c1 nmdc:mga05p37_427600_c1_390_1436 305
24 3300038443 Ga0395901_0041747 Ga0395901_0041747_2753_3802 306
25 3300038443 Ga0395901_0053435 Ga0395901_0053435_1160_2185 306
26 3300039093 Ga0400489_19520 Ga0400489_19520_136_1200 306
27 3300049582 Ga0501048_0186561 Ga0501048_0186561_396_1451 307
28 3300053139 Ga0500568_0000474 Ga0500568_0000474_5026_6075 307
29 3300037418 Ga0395900_0022940 Ga0395900_0022940_4478_5527 308
30 3300037466 Ga0395898_0006360 Ga0395898_0006360_7709_8758 308
31 3300037471 Ga0395905_0004079 Ga0395905_0004079_7774_8823 308
32 3300038443 Ga0395901_0015947 Ga0395901_0015947_5341_6390 308
33 3300048912 Ga0496109_0062259 Ga0496109_0062259_350_1393 308
34 3300048916 Ga0496113_0278055 Ga0496113_0278055_270_1313 308
35 3300049584 Ga0501068_0170993 Ga0501068_0170993_35_1093 309
36 3300005937 Ga0081455_10041859 Ga0081455_100418594 310
37 3300045976 Ga0466967_0225457 Ga0466967_0225457_717_1754 310
38 3300045976 Ga0466967_0003515 Ga0466967_0003515_3006_4043 311
39 3300046459 Ga0495629_0055790 Ga0495629_0055790_1092_2117 311
40 3300050512 nmdc:mga0n895_31257_c1 nmdc:mga0n895_31257_c1_4048_5073 311
41 3300050513 nmdc:mga0rr50_106211_c1 nmdc:mga0rr50_106211_c1_10_1035 311
42 3300053085 Ga0495619_0059775 Ga0495619_0059775_424_1449 311
43 3300005614 Ga0068856_100202543 Ga0068856_1002025432 312
44 3300025931 Ga0207644_10094164 Ga0207644_100941642 312
45 3300026078 Ga0207702_10186666 Ga0207702_101866662 312
46 3300048904 Ga0496101_0007296 Ga0496101_0007296_798_1859 312
47 3300048904 Ga0496101_0019675 Ga0496101_0019675_2850_3896 312
48 3300048905 Ga0496102_0058082 Ga0496102_0058082_1658_2704 312
49 3300048905 Ga0496102_0133864 Ga0496102_0133864_735_1796 312
50 3300048906 Ga0496103_0035483 Ga0496103_0035483_1481_2527 312
51 3300048909 Ga0496106_0002227 Ga0496106_0002227_1443_2489 312
52 3300048911 Ga0496108_0022681 Ga0496108_0022681_1211_2272 312
53 3300048913 Ga0496110_0010793 Ga0496110_0010793_4963_6024 312
54 3300048917 Ga0496114_0008120 Ga0496114_0008120_2381_3442 312
55 3300049578 Ga0501042_0171814 Ga0501042_0171814_390_1493 312
56 3300006846 Ga0075430_100119687 Ga0075430_1001196872 313
57 3300037418 Ga0395900_0030451 Ga0395900_0030451_4148_5182 313
58 3300005937 Ga0081455_10016356 Ga0081455_100163566 314
59 3300049571 Ga0501034_0221879 Ga0501034_0221879_26_1081 314
60 3300049575 Ga0501039_0054766 Ga0501039_0054766_2013_3068 314
61 3300049586 Ga0501070_0018647 Ga0501070_0018647_1314_2369 314
62 3300049823 Ga0501044_0004438 Ga0501044_0004438_10529_11584 314
63 3300049569 Ga0501032_0167987 Ga0501032_0167987_354_1331 315
64 3300049573 Ga0501037_0018695 Ga0501037_0018695_2539_3516 315
65 3300049574 Ga0501038_0088966 Ga0501038_0088966_17_994 315
66 3300049581 Ga0501047_0040864 Ga0501047_0040864_1847_2824 315
67 3300049742 Ga0501080_0102554 Ga0501080_0102554_143_1120 315
68 3300049823 Ga0501044_0054808 Ga0501044_0054808_2561_3538 315
69 3300050489 nmdc:mga03683_30849_c1 nmdc:mga03683_30849_c1_164_1165 315
70 3300005329 Ga0070683_100121107 Ga0070683_1001211072 316
71 3300005337 Ga0070682_100135632 Ga0070682_1001356322 316
72 3300005471 Ga0070698_100081170 Ga0070698_1000811702 316
73 3300005546 Ga0070696_100023651 Ga0070696_1000236513 316
74 3300009147 Ga0114129_10880020 Ga0114129_108800201 316
75 3300025944 Ga0207661_10145069 Ga0207661_101450692 316
76 3300035695 Ga0373927_0000030 Ga0373927_0000030_21790_22839 316
77 3300005518 Ga0070699_100187007 Ga0070699_1001870072 317
78 3300005937 Ga0081455_10110645 Ga0081455_101106452 317
79 3300006038 Ga0075365_10171180 Ga0075365_101711802 317
80 3300009094 Ga0111539_10492040 Ga0111539_104920402 317
81 3300049569 Ga0501032_0025524 Ga0501032_0025524_33_1088 317
82 3300049570 Ga0501033_0082183 Ga0501033_0082183_963_2018 317
83 3300049574 Ga0501038_0067080 Ga0501038_0067080_1114_2169 317
84 3300049579 Ga0501043_0017451 Ga0501043_0017451_1356_2411 317
85 3300049581 Ga0501047_0038335 Ga0501047_0038335_3493_4548 317
86 3300049822 Ga0501035_0040201 Ga0501035_0040201_3159_4214 317
87 3300049823 Ga0501044_0260217 Ga0501044_0260217_501_1556 317
88 3300050511 nmdc:mga08y16_497368_c1 nmdc:mga08y16_497368_c1_22_1080 317
89 3300005937 Ga0081455_10033151 Ga0081455_100331513 318
90 3300006852 Ga0075433_10228722 Ga0075433_102287222 318
91 3300007076 Ga0075435_100056584 Ga0075435_1000565842 318
92 3300031995 Ga0307409_100237506 Ga0307409_1002375062 319
93 3300005937 Ga0081455_10172889 Ga0081455_101728892 320
94 3300048904 Ga0496101_0099780 Ga0496101_0099780_804_1829 320
95 3300049742 Ga0501080_0342266 Ga0501080_0342266_268_1323 320
96 3300005468 Ga0070707_100012560 Ga0070707_1000125605 321
97 3300037068 Ga0373925_0089474 Ga0373925_0089474_930_1958 321
98 3300045976 Ga0466967_0212222 Ga0466967_0212222_515_1540 323
99 3300005467 Ga0070706_100011658 Ga0070706_1000116583 324
100 3300005468 Ga0070707_100005587 Ga0070707_1000055874 324
101 3300025910 Ga0207684_10006787 Ga0207684_100067877 324
102 3300025922 Ga0207646_10000435 Ga0207646_1000043517 324
103 3300031995 Ga0307409_100117301 Ga0307409_1001173012 324
104 3300032002 Ga0307416_100025031 Ga0307416_1000250312 324
105 3300032126 Ga0307415_100000613 Ga0307415_10000061311 324
106 3300049586 Ga0501070_0020350 Ga0501070_0020350_3367_4416 324
107 3300049589 Ga0501073_0017781 Ga0501073_0017781_2476_3525 324
108 3300049590 Ga0501074_0023093 Ga0501074_0023093_218_1267 324
109 3300049823 Ga0501044_0319223 Ga0501044_0319223_175_1224 324
110 3300005445 Ga0070708_100082434 Ga0070708_1000824342 325
111 3300005467 Ga0070706_100004977 Ga0070706_10000497710 325
112 3300005468 Ga0070707_100002721 Ga0070707_10000272110 325
113 3300005471 Ga0070698_100000090 Ga0070698_10000009013 325
114 3300025910 Ga0207684_10003039 Ga0207684_1000303910 325
115 3300025922 Ga0207646_10003848 Ga0207646_1000384810 325
116 3300005445 Ga0070708_100395127 Ga0070708_1003951272 327
117 3300005434 Ga0070709_10113657 Ga0070709_101136572 328
118 3300031727 Ga0316576_10057564 Ga0316576_100575641 328
119 3300035398 Ga0316574_0045580 Ga0316574_0045580_462_1481 328
120 3300005365 Ga0070688_100150778 Ga0070688_1001507782 329
121 3300005457 Ga0070662_100047820 Ga0070662_1000478202 329
122 3300005719 Ga0068861_100057832 Ga0068861_1000578322 329
123 3300009094 Ga0111539_10044423 Ga0111539_100444233 329
124 3300025926 Ga0207659_10304507 Ga0207659_103045072 329
125 3300025933 Ga0207706_10130386 Ga0207706_101303862 329
126 3300026075 Ga0207708_10038191 Ga0207708_100381912 329
127 3300026118 Ga0207675_100062152 Ga0207675_1000621522 329
128 3300027907 Ga0207428_10072342 Ga0207428_100723423 329
129 3300049571 Ga0501034_0059731 Ga0501034_0059731_1068_2120 329
130 3300049823 Ga0501044_0121313 Ga0501044_0121313_929_1981 329
131 3300003323 rootH1_10053194 rootH1_100531942 340

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02653

BPD_transp_2

Branched-chain amino acid transport system / permease component

46

321

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4g1u-assembly1.cif.gz_B x-ray structure of the bacterial heme transporter hmuuv from yersinia pestis 0.5442 27 330
7kyp-assembly4.cif.gz_N psabc from streptococcus pneumoniae in complex with fab 0.5423 49 319
4g1u-assembly1.cif.gz_B x-ray structure of the bacterial heme transporter hmuuv from yersinia pestis 0.5353 27 330
7kyp-assembly4.cif.gz_N psabc from streptococcus pneumoniae in complex with fab 0.5128 49 319
4dbl-assembly1.cif.gz_B crystal structure of e159q mutant of btucdf 0.5096 19 333
ID Description Score Start End Superfamily
af_P0AGI4_56_383_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9405 57 320 1.10.3470.10
af_P23200_41_325_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9311 57 320 1.10.3470.10
af_P32720_52_318_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9243 57 320 1.10.3470.10
af_P32720_52_318_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9109 57 320 1.10.3470.10
af_P0AE26_50_315_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9105 57 320 1.10.3470.10
ID Description Score Start End GO Terms
AF-A0A535L2C8-F1-model_v4 ABC transporter permease 0.97 178 329 GO:0005886
GO:0022857
AF-A0A2W5SEV9-F1-model_v4 Autoinducer 2 import system permease protein LsrC 0.9636 27 339 GO:0005886
GO:0022857
AF-A0A7G8XDE4-F1-model_v4 Xylose transport system permease protein XylH 0.9537 30 327 GO:0005886
GO:0022857
AF-A0A3R6EA16-F1-model_v4 deleted 0.95 35 328
AF-A0A2U9PIC9-F1-model_v4 Autoinducer 2 import system permease protein LsrC 0.9443 64 262 GO:0005886
GO:0022857

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pLDDT pTM Quality
82.1 0.82 High
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Predicted Structure (AlphaFold2)

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