F140672

General Info

Members Datasets Scaffolds Average Seq Length
129 110 129 310

Family's Representative Sequence

Representative Sequence 3300005341|Ga0070691_10003303|Ga0070691_100033034
Length 345
Sequence MGEILTHLNLDFDSSKSAGRAALLESVAMADPVAVELDAQYRQLREECGLVDRSQRGKLIASGPEAAEYLQGQLTNDVEALAPGDGQYAALLDRKGHIQADMRVLRIGAEEIWVDTEPEALAAAKRHLEMYKIGREVAIADLTAERAILSLIGPRSVEIAGSAALHEHASEAAKIGGVECLAVGTADGIDLIAGSTEAADLREALTGAGAVEVGPAAAEVVRIEAGTPRFGAEMSSETMPAEASIVERAVSFTKGCYIGQEPVARLHYKGRPNRRLRGLELSAPAAPGASLHLGEKEVGRVGSACLSPARGPIALAIVRREAETGDELAVGEDGVTARVIDLPFG

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300002074 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 Metagenome Rhizosphere
3 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
23 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
29 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
30 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
31 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
36 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
37 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
38 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
60 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
61 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
62 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
63 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
64 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
65 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
66 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
67 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
68 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
69 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
70 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
73 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
74 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
75 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
76 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
77 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
78 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
79 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
80 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
81 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
82 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
83 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
84 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
85 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
86 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
87 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
88 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
89 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
90 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
91 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
92 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
93 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
94 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
95 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
96 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
97 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
98 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
99 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
100 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
101 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
102 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
103 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
104 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
105 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
106 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
107 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
108 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
109 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
110 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.22
Metatranscriptomes 0.78
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.78
Nodule 0
Rhizoplane 7.75
Rhizosphere 91.47
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10015843 3300001979 Bacteria 2740
2 JGI24748J21848_1000328 3300002074 Bacteria 5472
3 JGI24034J26672_10000561 3300002239 Bacteria 4725
4 Ga0070683_100053616 3300005329 Bacteria 3737
5 Ga0070683_100264721 3300005329 Bacteria 1635
6 Ga0070691_10003303 3300005341 Bacteria 7231
7 Ga0070661_100000102 3300005344 Bacteria 69941
8 Ga0070692_10025703 3300005345 Bacteria 2905
9 Ga0070668_100034514 3300005347 Bacteria 3855
10 Ga0070675_100000027 3300005354 Bacteria 106172
11 Ga0070671_100199811 3300005355 Bacteria 1695
12 Ga0070674_100000090 3300005356 Bacteria 42115
13 Ga0070688_100000738 3300005365 Bacteria 16106
14 Ga0070659_100038409 3300005366 Bacteria 3734
15 Ga0070667_100010141 3300005367 Bacteria 7793
16 Ga0070713_100000085 3300005436 Bacteria 58902
17 Ga0070685_10000616 3300005466 Bacteria 19644
18 Ga0070684_100031674 3300005535 Bacteria 4503
19 Ga0070686_100127399 3300005544 Bacteria 1756
20 Ga0070665_100000950 3300005548 Bacteria 36935
21 Ga0070665_100029138 3300005548 Bacteria 5556
22 Ga0070664_100015017 3300005564 Bacteria 6322
23 Ga0068864_100000053 3300005618 Bacteria 133049
24 Ga0068866_10001215 3300005718 Bacteria 11198
25 Ga0068851_10021252 3300005834 Bacteria 3151
26 Ga0068863_100000342 3300005841 Bacteria 47536
27 Ga0068863_100024630 3300005841 Bacteria 5739
28 Ga0068858_100000065 3300005842 Bacteria 108233
29 Ga0068862_100004868 3300005844 Bacteria 11306
30 Ga0081455_10062922 3300005937 Bacteria 3116
31 Ga0075433_10000900 3300006852 Bacteria 20958
32 Ga0105247_10000316 3300009101 Bacteria 43374
33 Ga0105243_10100073 3300009148 Bacteria 2405
34 Ga0105242_10000032 3300009176 Bacteria 98198
35 Ga0105242_10000454 3300009176 Bacteria 32662
36 Ga0105242_10131197 3300009176 Bacteria 2163
37 Ga0105249_10016419 3300009553 Bacteria 6568
38 Ga0157370_10038604 3300013104 Bacteria 4619
39 Ga0157374_10001772 3300013296 Bacteria 18163
40 Ga0157375_10001538 3300013308 Bacteria 19849
41 Ga0157375_10108523 3300013308 Bacteria 2870
42 Ga0157380_10000169 3300014326 Bacteria 37727
43 Ga0206356_11289038 3300020070 Bacteria 1113
44 Ga0207656_10012937 3300025321 Bacteria 3178
45 Ga0207642_10004310 3300025899 Bacteria 4585
46 Ga0207710_10000458 3300025900 Bacteria 26155
47 Ga0207649_10000009 3300025920 Bacteria 295544
48 Ga0207659_10000010 3300025926 Bacteria 286639
49 Ga0207690_10061007 3300025932 Bacteria 2562
50 Ga0207686_10000048 3300025934 Bacteria 115595
51 Ga0207686_10000447 3300025934 Bacteria 27400
52 Ga0207686_10016594 3300025934 Bacteria 4134
53 Ga0207709_10020901 3300025935 Bacteria 3698
54 Ga0207669_10000096 3300025937 Bacteria 44213
55 Ga0207661_10007582 3300025944 Bacteria 7717
56 Ga0207661_10221824 3300025944 Bacteria 1671
57 Ga0207679_10012221 3300025945 Bacteria 5593
58 Ga0207668_10188255 3300025972 Bacteria 1633
59 Ga0207658_10002826 3300025986 Bacteria 12451
60 Ga0207677_10006627 3300026023 Bacteria 6354
61 Ga0207703_10000018 3300026035 Bacteria 271377
62 Ga0207703_10077051 3300026035 Bacteria 2767
63 Ga0207708_10128773 3300026075 Bacteria 1977
64 Ga0207641_10000238 3300026088 Bacteria 71152
65 Ga0207641_10041448 3300026088 Bacteria 3859
66 Ga0207676_10000195 3300026095 Bacteria 52951
67 Ga0268266_10136195 3300028379 Bacteria 2200
68 Ga0268265_10021246 3300028380 Bacteria 4543
69 Ga0268264_10155480 3300028381 Unclassified 2055
70 Ga0265337_1000807 3300028556 Bacteria 16498
71 Ga0265326_10000252 3300028558 Bacteria 25133
72 Ga0265322_10000001 3300028654 Bacteria 543854
73 Ga0265336_10019203 3300028666 Bacteria 2208
74 Ga0265324_10000755 3300029957 Bacteria 21443
75 Ga0265330_10058676 3300031235 Bacteria 1677
76 Ga0265328_10001094 3300031239 Bacteria 12441
77 Ga0265320_10000002 3300031240 Bacteria 542875
78 Ga0265339_10037208 3300031249 Bacteria 2720
79 Ga0265327_10000011 3300031251 Bacteria 543807
80 Ga0265316_10058138 3300031344 Bacteria 3014
81 Ga0265314_10000062 3300031711 Bacteria 159496
82 Ga0395900_0388169 3300037418 Bacteria 1363
83 Ga0466963_0000153 3300044694 Bacteria 27553
84 Ga0466958_0030687 3300045836 Bacteria 3194
85 Ga0495592_0001452 3300046454 Bacteria 16469
86 Ga0495629_0029398 3300046459 Bacteria 3897
87 Ga0495641_0007825 3300046461 Bacteria 6617
88 Ga0495608_0028451 3300046511 Bacteria 3798
89 Ga0495620_0000824 3300046515 Bacteria 19119
90 Ga0495630_0000020 3300046517 Bacteria 176389
91 Ga0495630_0009955 3300046517 Bacteria 6845
92 Ga0495587_0238590 3300046536 Bacteria 1023
93 Ga0495621_0034849 3300046539 Bacteria 1740
94 Ga0495645_0066622 3300046543 Bacteria 2602
95 Ga0495667_0000018 3300046559 Bacteria 188610
96 Ga0495656_0006914 3300046615 Bacteria 3990
97 Ga0495634_0000059 3300046642 Bacteria 88314
98 Ga0495588_0000134 3300046674 Bacteria 117581
99 Ga0495647_0000018 3300046681 Bacteria 81701
100 Ga0495647_0000156 3300046681 Bacteria 17539
101 Ga0495613_0000801 3300046689 Bacteria 24391
102 Ga0495613_0143738 3300046689 Bacteria 1703
103 Ga0495670_0035580 3300046691 Bacteria 2482
104 Ga0495600_0007876 3300046809 Bacteria 6525
105 Ga0495604_0000137 3300047317 Bacteria 62542
106 Ga0495604_0009878 3300047317 Bacteria 7555
107 Ga0495674_0000064 3300047319 Bacteria 71275
108 Ga0495676_0000130 3300047321 Bacteria 56693
109 Ga0495680_0004286 3300047322 Bacteria 13686
110 Ga0495686_0035491 3300047472 Bacteria 3205
111 Ga0496100_0000005 3300048903 Bacteria 312112
112 Ga0496101_0000101 3300048904 Bacteria 89424
113 Ga0496104_0000004 3300048907 Bacteria 641830
114 Ga0496104_0006952 3300048907 Bacteria 9977
115 Ga0496105_0000001 3300048908 Bacteria 1328178
116 Ga0496105_0000650 3300048908 Bacteria 23286
117 Ga0496106_0000682 3300048909 Bacteria 24335
118 Ga0496107_0000011 3300048910 Bacteria 201631
119 Ga0496108_0000281 3300048911 Bacteria 43637
120 Ga0496109_0001118 3300048912 Bacteria 22284
121 nmdc:mga0a205_1483_c2 3300050515 Bacteria 8882
122 nmdc:mga0a205_6_c1 3300050515 Bacteria 129758
123 Ga0495601_0000013 3300053077 Bacteria 226476
124 Ga0495601_0010348 3300053077 Bacteria 5548
125 Ga0495612_0047759 3300053078 Bacteria 1754
126 Ga0495655_0000001 3300053083 Bacteria 419518
127 Ga0495595_0010459 3300053084 Bacteria 3856
128 Ga0495619_0000025 3300053085 Bacteria 167905
129 Ga0500628_000033 3300053129 Bacteria 52431

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005365 Ga0070688_100000738 Ga0070688_10000073815 280
2 3300005466 Ga0070685_10000616 Ga0070685_1000061621 280
3 3300005344 Ga0070661_100000102 Ga0070661_10000010219 287
4 3300025920 Ga0207649_10000009 Ga0207649_10000009233 287
5 3300045836 Ga0466958_0030687 Ga0466958_0030687_1855_2799 289
6 3300005347 Ga0070668_100034514 Ga0070668_1000345143 292
7 3300005367 Ga0070667_100010141 Ga0070667_1000101414 292
8 3300005548 Ga0070665_100029138 Ga0070665_1000291382 292
9 3300005844 Ga0068862_100004868 Ga0068862_10000486810 292
10 3300009553 Ga0105249_10016419 Ga0105249_100164194 292
11 3300025986 Ga0207658_10002826 Ga0207658_1000282610 292
12 3300028379 Ga0268266_10136195 Ga0268266_101361952 292
13 3300028380 Ga0268265_10021246 Ga0268265_100212462 292
14 3300028381 Ga0268264_10155480 Ga0268264_101554802 292
15 3300005548 Ga0070665_100000950 Ga0070665_10000095035 294
16 3300046689 Ga0495613_0000801 Ga0495613_0000801_18270_19223 295
17 3300047317 Ga0495604_0009878 Ga0495604_0009878_3323_4276 295
18 3300053084 Ga0495595_0010459 Ga0495595_0010459_1587_2540 295
19 3300005937 Ga0081455_10062922 Ga0081455_100629221 296
20 3300014326 Ga0157380_10000169 Ga0157380_1000016935 296
21 3300005356 Ga0070674_100000090 Ga0070674_10000009028 298
22 3300005718 Ga0068866_10001215 Ga0068866_1000121510 298
23 3300009148 Ga0105243_10100073 Ga0105243_101000732 298
24 3300009176 Ga0105242_10131197 Ga0105242_101311972 298
25 3300025899 Ga0207642_10004310 Ga0207642_100043103 298
26 3300025934 Ga0207686_10016594 Ga0207686_100165942 298
27 3300025935 Ga0207709_10020901 Ga0207709_100209013 298
28 3300025937 Ga0207669_10000096 Ga0207669_1000009629 298
29 3300047472 Ga0495686_0035491 Ga0495686_0035491_1582_2526 299
30 3300005354 Ga0070675_100000027 Ga0070675_10000002739 300
31 3300005834 Ga0068851_10021252 Ga0068851_100212523 300
32 3300025321 Ga0207656_10012937 Ga0207656_100129373 300
33 3300025926 Ga0207659_10000010 Ga0207659_1000001060 300
34 3300005329 Ga0070683_100264721 Ga0070683_1002647212 301
35 3300005564 Ga0070664_100015017 Ga0070664_1000150175 301
36 3300025944 Ga0207661_10221824 Ga0207661_102218242 301
37 3300025945 Ga0207679_10012221 Ga0207679_100122215 301
38 3300005345 Ga0070692_10025703 Ga0070692_100257033 302
39 3300005355 Ga0070671_100199811 Ga0070671_1001998112 302
40 3300005366 Ga0070659_100038409 Ga0070659_1000384093 302
41 3300005841 Ga0068863_100024630 Ga0068863_1000246304 302
42 3300025932 Ga0207690_10061007 Ga0207690_100610073 302
43 3300026023 Ga0207677_10006627 Ga0207677_100066273 302
44 3300026088 Ga0207641_10041448 Ga0207641_100414483 302
45 3300046461 Ga0495641_0007825 Ga0495641_0007825_103_1014 302
46 3300046517 Ga0495630_0000020 Ga0495630_0000020_89435_90346 302
47 3300046681 Ga0495647_0000156 Ga0495647_0000156_11473_12384 302
48 3300047319 Ga0495674_0000064 Ga0495674_0000064_40815_41768 302
49 3300053077 Ga0495601_0000013 Ga0495601_0000013_23890_24843 302
50 3300005436 Ga0070713_100000085 Ga0070713_10000008516 303
51 3300009176 Ga0105242_10000454 Ga0105242_100004549 303
52 3300025934 Ga0207686_10000447 Ga0207686_1000044712 303
53 3300048907 Ga0496104_0000004 Ga0496104_0000004_354087_355037 303
54 3300048908 Ga0496105_0000001 Ga0496105_0000001_286794_287744 303
55 3300009101 Ga0105247_10000316 Ga0105247_1000031631 304
56 3300009176 Ga0105242_10000032 Ga0105242_1000003230 304
57 3300025900 Ga0207710_10000458 Ga0207710_1000045812 304
58 3300025934 Ga0207686_10000048 Ga0207686_1000004830 304
59 3300026035 Ga0207703_10077051 Ga0207703_100770513 306
60 3300046459 Ga0495629_0029398 Ga0495629_0029398_137_1090 306
61 3300048911 Ga0496108_0000281 Ga0496108_0000281_42207_43160 306
62 3300048912 Ga0496109_0001118 Ga0496109_0001118_14506_15459 306
63 3300046515 Ga0495620_0000824 Ga0495620_0000824_11954_12907 307
64 3300046674 Ga0495588_0000134 Ga0495588_0000134_20693_21649 307
65 3300013308 Ga0157375_10108523 Ga0157375_101085232 310
66 3300002074 JGI24748J21848_1000328 JGI24748J21848_10003283 311
67 3300002239 JGI24034J26672_10000561 JGI24034J26672_100005613 311
68 3300020070 Ga0206356_11289038 Ga0206356_112890381 315
69 3300005329 Ga0070683_100053616 Ga0070683_1000536163 316
70 3300005535 Ga0070684_100031674 Ga0070684_1000316743 316
71 3300025944 Ga0207661_10007582 Ga0207661_100075829 316
72 3300025972 Ga0207668_10188255 Ga0207668_101882551 316
73 3300037418 Ga0395900_0388169 Ga0395900_0388169_12_1079 316
74 3300046809 Ga0495600_0007876 Ga0495600_0007876_4016_4969 316
75 3300047317 Ga0495604_0000137 Ga0495604_0000137_55158_56111 316
76 3300001979 JGI24740J21852_10015843 JGI24740J21852_100158431 317
77 3300005341 Ga0070691_10003303 Ga0070691_100033034 317
78 3300005544 Ga0070686_100127399 Ga0070686_1001273992 317
79 3300005618 Ga0068864_100000053 Ga0068864_10000005399 317
80 3300005841 Ga0068863_100000342 Ga0068863_10000034245 317
81 3300005842 Ga0068858_100000065 Ga0068858_10000006539 317
82 3300006852 Ga0075433_10000900 Ga0075433_1000090018 317
83 3300013104 Ga0157370_10038604 Ga0157370_100386043 317
84 3300013296 Ga0157374_10001772 Ga0157374_100017724 317
85 3300013308 Ga0157375_10001538 Ga0157375_100015384 317
86 3300026035 Ga0207703_10000018 Ga0207703_1000001839 317
87 3300026075 Ga0207708_10128773 Ga0207708_101287732 317
88 3300026088 Ga0207641_10000238 Ga0207641_1000023879 317
89 3300026095 Ga0207676_10000195 Ga0207676_1000019529 317
90 3300028556 Ga0265337_1000807 Ga0265337_10008075 317
91 3300028558 Ga0265326_10000252 Ga0265326_100002528 317
92 3300028654 Ga0265322_10000001 Ga0265322_10000001376 317
93 3300028666 Ga0265336_10019203 Ga0265336_100192031 317
94 3300029957 Ga0265324_10000755 Ga0265324_100007554 317
95 3300031235 Ga0265330_10058676 Ga0265330_100586761 317
96 3300031239 Ga0265328_10001094 Ga0265328_100010946 317
97 3300031240 Ga0265320_10000002 Ga0265320_10000002375 317
98 3300031249 Ga0265339_10037208 Ga0265339_100372083 317
99 3300031251 Ga0265327_10000011 Ga0265327_10000011375 317
100 3300031344 Ga0265316_10058138 Ga0265316_100581383 317
101 3300031711 Ga0265314_10000062 Ga0265314_10000062109 317
102 3300044694 Ga0466963_0000153 Ga0466963_0000153_8919_9872 317
103 3300046454 Ga0495592_0001452 Ga0495592_0001452_15465_16418 317
104 3300046511 Ga0495608_0028451 Ga0495608_0028451_2807_3760 317
105 3300046517 Ga0495630_0009955 Ga0495630_0009955_5811_6764 317
106 3300046536 Ga0495587_0238590 Ga0495587_0238590_10_963 317
107 3300046539 Ga0495621_0034849 Ga0495621_0034849_469_1422 317
108 3300046543 Ga0495645_0066622 Ga0495645_0066622_263_1219 317
109 3300046559 Ga0495667_0000018 Ga0495667_0000018_68571_69524 317
110 3300046615 Ga0495656_0006914 Ga0495656_0006914_1572_2531 317
111 3300046642 Ga0495634_0000059 Ga0495634_0000059_48491_49444 317
112 3300046681 Ga0495647_0000018 Ga0495647_0000018_78780_79733 317
113 3300046689 Ga0495613_0143738 Ga0495613_0143738_10_963 317
114 3300046691 Ga0495670_0035580 Ga0495670_0035580_1485_2438 317
115 3300047321 Ga0495676_0000130 Ga0495676_0000130_24509_25462 317
116 3300047322 Ga0495680_0004286 Ga0495680_0004286_5145_6098 317
117 3300048903 Ga0496100_0000005 Ga0496100_0000005_273288_274244 317
118 3300048904 Ga0496101_0000101 Ga0496101_0000101_56810_57766 317
119 3300048907 Ga0496104_0006952 Ga0496104_0006952_4278_5231 317
120 3300048908 Ga0496105_0000650 Ga0496105_0000650_3720_4673 317
121 3300048909 Ga0496106_0000682 Ga0496106_0000682_11481_12437 317
122 3300048910 Ga0496107_0000011 Ga0496107_0000011_37639_38595 317
123 3300050515 nmdc:mga0a205_1483_c2 nmdc:mga0a205_1483_c2_709_1662 317
124 3300050515 nmdc:mga0a205_6_c1 nmdc:mga0a205_6_c1_116785_117738 317
125 3300053077 Ga0495601_0010348 Ga0495601_0010348_1713_2666 317
126 3300053078 Ga0495612_0047759 Ga0495612_0047759_324_1280 317
127 3300053083 Ga0495655_0000001 Ga0495655_0000001_290627_291580 317
128 3300053085 Ga0495619_0000025 Ga0495619_0000025_125690_126643 317
129 3300053129 Ga0500628_000033 Ga0500628_000033_42658_43611 317

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08669

GCV_T_C

Glycine cleavage T-protein C-terminal barrel domain

274

344

0.94

PF01571

GCV_T

Aminomethyltransferase folate-binding domain

12

247

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
1yx2-assembly1.cif.gz_A crystal structure of the probable aminomethyltransferase from bacillus subtilis 0.9086 8 316
1woo-assembly1.cif.gz_A crystal structure of t-protein of the glycine cleavage system 0.9073 8 317
1v5v-assembly1.cif.gz_B crystal structure of a component of glycine cleavage system: t-protein from pyrococcus horikoshii ot3 at 1.5 a resolution 0.8988 8 317
4pab-assembly2.cif.gz_B crystal structure of the precursor form of rat dmgdh complexed with tetrahydrofolate 0.8961 9 317
5l46-assembly1.cif.gz_A crystal structure of human dimethylglycine-dehydrogenase 0.8957 9 317
ID Description Score Start End Superfamily
1wosA02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Aminomethyltransferase beta-barrel domains 0.9639 28 112 3.30.70.1400
3girA02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Aminomethyltransferase beta-barrel domains 0.9567 30 111 3.30.70.1400
1v5vB02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Aminomethyltransferase beta-barrel domains 0.9504 29 112 3.30.70.1400
af_P9WN51_56_141_3.30.1360.120 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9442 28 112 3.30.1360.120
1wosA02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Aminomethyltransferase beta-barrel domains 0.9321 28 112 3.30.70.1400
ID Description Score Start End GO Terms
AF-A0A6B3FCQ5-F1-model_v4 Glycine cleavage system protein T 0.9787 26 113 GO:0005829
AF-A0A7V6X2U1-F1-model_v4 Glycine cleavage system aminomethyltransferase GcvT 0.9584 23 90 GO:0005829
GO:0008168
GO:0032259
AF-A0A6B3FCQ5-F1-model_v4 Glycine cleavage system protein T 0.9574 26 113 GO:0005829
AF-A0A381Z4P2-F1-model_v4 FAD/NAD(P)-binding domain-containing protein 0.957 25 95 GO:0016491
AF-A0A529JRP4-F1-model_v4 Sarcosine oxidase subunit alpha family protein 0.9559 23 115

Feature Viewer

pLDDT pTM Quality
88.96 0.87 High
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Predicted Structure (AlphaFold2)

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