F135593

General Info

Members Datasets Scaffolds Average Seq Length
127 94 127 609

Family's Representative Sequence

Representative Sequence 3300046674|Ga0495588_0000186|Ga0495588_0000186_31029_32882
Length 599
Sequence MMSDQSPEEYLHAMRHSLAHIMATAVKRLFPDVKLGVGPVVEHGFYYDMDLGEDKLSEEDFERIEAEMMKIVKEDQTFECFSLPVDEAIAWAKANSQPYKEELLNDLKRAGTTSAKDINAEELGVEAGSDSKVEQVSFYKNGDFTDLCRGPHVASTSKVGAFKLMRLSGAYWRGKEGNPQMQRLYGVAFKTDKELRQHLAMLEEAKKRDHRKLGQELDLFVFSDLVGAGLPLFTPRGTVLREELTRFSNELRERNGFQKVSIPHITKEDLYVASGHWAKFGDELFLVKSQETSDKFVMKPMNCPHHTQIFASRPRSYRDMPQRYLETTMVYRDEKTGELGGLSRVRSITQDDSHAFVRPDQIEQEIDALLASAREMYETMGMNLLWQSAQNQLKTATETNQLEYFEQEGEAAFYGPKIDMMASDALGREHQVATVQLDFVMPERFDLEYIDEKGEKQHPVMIHCALLGSIERFLSVYIEHTAGRFPTWVAPEQVRVITVNQEEATVAFANTIVEQAKSLGLRISVDNDNESVGKKIRNAELWKTPYTLVIGEKEIETGEVTPRIRRDMVVNENTQSRTLEEFLKTVAHEVKSRVSKTSL

Samples

Sample ID Description Type Environment
1 3300002244 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
10 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
13 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
19 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
20 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
23 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
24 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
25 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
26 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
29 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
50 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
51 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
52 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
53 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
54 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
55 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
56 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
57 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
58 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
59 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
60 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
62 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
64 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
69 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
71 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
72 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
73 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
74 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
75 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
76 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
77 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
78 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
79 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
80 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
81 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
82 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
83 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
84 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
85 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
86 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
87 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
88 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
89 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
90 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
91 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
92 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
93 3300053722 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 endosphere Metagenome Endosphere
94 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.26
Nodule 0
Rhizoplane 1.57
Rhizosphere 77.17
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24742J22300_10000001 3300002244 Bacteria 61784
2 Ga0070658_10000076 3300005327 Bacteria 95016
3 Ga0070658_10000336 3300005327 Bacteria 40548
4 Ga0070658_10002074 3300005327 Bacteria 16820
5 Ga0070658_10009493 3300005327 Bacteria 7820
6 Ga0070658_10021355 3300005327 Bacteria 5189
7 Ga0070676_10001575 3300005328 Bacteria 11597
8 Ga0070690_100028886 3300005330 Bacteria 3437
9 Ga0070680_100004462 3300005336 Bacteria 10540
10 Ga0070660_100011324 3300005339 Bacteria 6331
11 Ga0070671_100000001 3300005355 Bacteria 1228151
12 Ga0070671_100010374 3300005355 Bacteria 7472
13 Ga0070681_10001075 3300005458 Bacteria 23279
14 Ga0070681_10040419 3300005458 Bacteria 4673
15 Ga0070679_100003999 3300005530 Bacteria 13581
16 Ga0070679_100012371 3300005530 Bacteria 8153
17 Ga0070679_100013711 3300005530 Bacteria 7765
18 Ga0070686_100024216 3300005544 Bacteria 3637
19 Ga0068855_100056577 3300005563 Bacteria 4601
20 Ga0068857_100000322 3300005577 Bacteria 32987
21 Ga0068856_100004421 3300005614 Bacteria 14006
22 Ga0068852_100000001 3300005616 Bacteria 716526
23 Ga0068858_100006601 3300005842 Bacteria 11289
24 Ga0068860_100062108 3300005843 Bacteria 3550
25 Ga0081455_10001799 3300005937 Bacteria 25858
26 Ga0075364_10000111 3300006051 Bacteria 33702
27 Ga0075369_10000004 3300006186 Bacteria 154675
28 Ga0075370_10006408 3300006353 Bacteria 5917
29 Ga0111539_10000377 3300009094 Bacteria 55154
30 Ga0105245_10000001 3300009098 Bacteria 939270
31 Ga0105241_10001961 3300009174 Bacteria 15578
32 Ga0105237_10000159 3300009545 Bacteria 95980
33 Ga0105238_10000480 3300009551 Bacteria 41924
34 Ga0105028_100052 3300009993 Bacteria 12313
35 Ga0157369_10005134 3300013105 Bacteria 15326
36 Ga0157369_10234740 3300013105 Bacteria 1917
37 Ga0157374_10000590 3300013296 Bacteria 32049
38 Ga0157374_10146127 3300013296 Unclassified 2296
39 Ga0157372_10000487 3300013307 Bacteria 43763
40 Ga0163163_10002696 3300014325 Bacteria 15011
41 Ga0207680_10004808 3300025903 Bacteria 6427
42 Ga0207645_10030446 3300025907 Bacteria 3477
43 Ga0207705_10000019 3300025909 Bacteria 317770
44 Ga0207705_10000423 3300025909 Bacteria 36934
45 Ga0207705_10002528 3300025909 Bacteria 14089
46 Ga0207705_10008440 3300025909 Bacteria 7522
47 Ga0207654_10003094 3300025911 Bacteria 8422
48 Ga0207707_10018994 3300025912 Bacteria 5995
49 Ga0207707_10041371 3300025912 Bacteria 4025
50 Ga0207671_10000008 3300025914 Bacteria 798229
51 Ga0207657_10005117 3300025919 Bacteria 13738
52 Ga0207652_10002361 3300025921 Bacteria 15958
53 Ga0207652_10005699 3300025921 Bacteria 10110
54 Ga0207652_10016622 3300025921 Bacteria 6011
55 Ga0207694_10003439 3300025924 Bacteria 12588
56 Ga0207687_10000001 3300025927 Bacteria 1130810
57 Ga0207687_10000004 3300025927 Bacteria 841177
58 Ga0207644_10000001 3300025931 Bacteria 1243214
59 Ga0207667_10039184 3300025949 Bacteria 5052
60 Ga0207703_10004597 3300026035 Bacteria 11295
61 Ga0207639_10013090 3300026041 Bacteria 5793
62 Ga0207641_10024555 3300026088 Bacteria 4968
63 Ga0207674_10000563 3300026116 Bacteria 48522
64 Ga0207698_10000169 3300026142 Bacteria 40939
65 Ga0265338_10005939 3300028800 Bacteria 15728
66 Ga0265327_10000833 3300031251 Bacteria 46172
67 Ga0307406_10000001 3300031901 Bacteria 638191
68 Ga0307406_10000897 3300031901 Bacteria 16719
69 Ga0395899_0000969 3300037312 Bacteria 26598
70 Ga0395899_0004013 3300037312 Bacteria 11601
71 Ga0395900_0000612 3300037418 Bacteria 48582
72 Ga0395900_0004863 3300037418 Bacteria 14155
73 Ga0395900_0035162 3300037418 Bacteria 5161
74 Ga0395900_0135721 3300037418 Bacteria 2520
75 Ga0395900_0150470 3300037418 Bacteria 2378
76 Ga0395898_0005060 3300037466 Bacteria 14292
77 Ga0395898_0009707 3300037466 Bacteria 10093
78 Ga0395905_0004226 3300037471 Bacteria 15008
79 Ga0395905_0006670 3300037471 Bacteria 11567
80 Ga0395901_0002238 3300038443 Bacteria 19738
81 Ga0395901_0004000 3300038443 Bacteria 14850
82 Ga0395901_0036996 3300038443 Bacteria 5047
83 Ga0495588_0000186 3300046674 Bacteria 68600
84 Ga0495649_0000057 3300046694 Bacteria 99739
85 Ga0495672_0000016 3300047320 Bacteria 500601
86 Ga0496112_0041968 3300048915 Bacteria 4476
87 Ga0496112_0196932 3300048915 Bacteria 1975
88 Ga0501031_0000077 3300049568 Bacteria 51667
89 Ga0501032_0001075 3300049569 Bacteria 21871
90 Ga0501034_0001207 3300049571 Bacteria 35479
91 Ga0501034_0001468 3300049571 Bacteria 31240
92 Ga0501036_0008117 3300049572 Bacteria 8603
93 Ga0501037_0000001 3300049573 Bacteria 753276
94 Ga0501037_0000329 3300049573 Bacteria 40132
95 Ga0501038_0016252 3300049574 Bacteria 6749
96 Ga0501043_0000182 3300049579 Bacteria 56595
97 Ga0501046_0000061 3300049580 Bacteria 120487
98 Ga0501047_0000676 3300049581 Bacteria 35513
99 Ga0501048_0000024 3300049582 Bacteria 67807
100 Ga0501070_0039810 3300049586 Unclassified 3920
101 Ga0501083_0011386 3300049744 Bacteria 6240
102 Ga0501035_0000956 3300049822 Bacteria 30555
103 nmdc:mga07m45_1636_c1 3300050496 Bacteria 10311
104 nmdc:mga08y16_287_c1 3300050511 Bacteria 45722
105 nmdc:mga0sz30_2_c1 3300050516 Bacteria 626403
106 Ga0500610_0000009 3300053079 Bacteria 105876
107 Ga0500643_000061 3300053087 Bacteria 127538
108 Ga0500644_0000137 3300053088 Bacteria 45112
109 Ga0500646_0000144 3300053090 Bacteria 20993
110 Ga0500583_0001126 3300053092 Bacteria 7630
111 Ga0500651_0000199 3300053093 Bacteria 38281
112 Ga0500650_0000003 3300053098 Bacteria 164144
113 Ga0500555_000001 3300053103 Bacteria 1353713
114 Ga0500555_000002 3300053103 Bacteria 1314346
115 Ga0500556_0002572 3300053104 Bacteria 5723
116 Ga0500562_000002 3300053108 Bacteria 977234
117 Ga0500594_0000001 3300053118 Bacteria 1178472
118 Ga0500614_000001 3300053123 Bacteria 1274484
119 Ga0500614_001387 3300053123 Bacteria 5825
120 Ga0500642_0000586 3300053130 Bacteria 10900
121 Ga0500652_000012 3300053131 Bacteria 155076
122 Ga0500655_000147 3300053133 Bacteria 17635
123 Ga0500577_0002845 3300053142 Bacteria 4449
124 Ga0500577_0022540 3300053142 Bacteria 2092
125 Ga0500589_000003 3300053147 Bacteria 220717
126 Ga0500649_000009 3300053722 Bacteria 94696
127 Ga0500611_000324 3300053727 Bacteria 4972

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048915 Ga0496112_0196932 Ga0496112_0196932_60_1796 577
2 3300009094 Ga0111539_10000377 Ga0111539_1000037743 586
3 3300050511 nmdc:mga08y16_287_c1 nmdc:mga08y16_287_c1_8458_10239 586
4 3300053079 Ga0500610_0000009 Ga0500610_0000009_37615_39396 586
5 3300053088 Ga0500644_0000137 Ga0500644_0000137_5720_7501 586
6 3300053103 Ga0500555_000002 Ga0500555_000002_1282892_1284673 586
7 3300053108 Ga0500562_000002 Ga0500562_000002_266666_268450 586
8 3300053131 Ga0500652_000012 Ga0500652_000012_89646_91427 586
9 3300005330 Ga0070690_100028886 Ga0070690_1000288862 587
10 3300005544 Ga0070686_100024216 Ga0070686_1000242162 587
11 3300006051 Ga0075364_10000111 Ga0075364_1000011114 587
12 3300006353 Ga0075370_10006408 Ga0075370_100064087 587
13 3300037418 Ga0395900_0035162 Ga0395900_0035162_471_2258 587
14 3300049568 Ga0501031_0000077 Ga0501031_0000077_11407_13203 587
15 3300049569 Ga0501032_0001075 Ga0501032_0001075_1681_3477 587
16 3300049571 Ga0501034_0001468 Ga0501034_0001468_15387_17183 587
17 3300049572 Ga0501036_0008117 Ga0501036_0008117_5508_7304 587
18 3300049573 Ga0501037_0000329 Ga0501037_0000329_2472_4268 587
19 3300049579 Ga0501043_0000182 Ga0501043_0000182_43174_44970 587
20 3300049580 Ga0501046_0000061 Ga0501046_0000061_95969_97765 587
21 3300049581 Ga0501047_0000676 Ga0501047_0000676_14079_15875 587
22 3300049582 Ga0501048_0000024 Ga0501048_0000024_30022_31818 587
23 3300049586 Ga0501070_0039810 Ga0501070_0039810_1186_2982 587
24 3300049822 Ga0501035_0000956 Ga0501035_0000956_23044_24840 587
25 3300050496 nmdc:mga07m45_1636_c1 nmdc:mga07m45_1636_c1_6369_8159 587
26 3300031901 Ga0307406_10000001 Ga0307406_10000001684 589
27 3300031901 Ga0307406_10000897 Ga0307406_1000089715 589
28 3300005577 Ga0068857_100000322 Ga0068857_10000032217 592
29 3300005616 Ga0068852_100000001 Ga0068852_10000000124 592
30 3300009174 Ga0105241_10001961 Ga0105241_1000196121 592
31 3300009545 Ga0105237_10000159 Ga0105237_1000015984 592
32 3300009551 Ga0105238_10000480 Ga0105238_1000048013 592
33 3300013105 Ga0157369_10005134 Ga0157369_1000513412 592
34 3300013105 Ga0157369_10234740 Ga0157369_102347402 592
35 3300025911 Ga0207654_10003094 Ga0207654_100030942 592
36 3300025914 Ga0207671_10000008 Ga0207671_1000000823 592
37 3300025924 Ga0207694_10003439 Ga0207694_100034393 592
38 3300026116 Ga0207674_10000563 Ga0207674_1000056333 592
39 3300026142 Ga0207698_10000169 Ga0207698_1000016923 592
40 3300049571 Ga0501034_0001207 Ga0501034_0001207_6141_7952 592
41 3300049573 Ga0501037_0000001 Ga0501037_0000001_671511_673322 592
42 3300049574 Ga0501038_0016252 Ga0501038_0016252_1782_3593 592
43 3300031251 Ga0265327_10000833 Ga0265327_1000083311 594
44 3300046674 Ga0495588_0000186 Ga0495588_0000186_31029_32882 595
45 3300053123 Ga0500614_000001 Ga0500614_000001_1037876_1039729 595
46 3300053722 Ga0500649_000009 Ga0500649_000009_15261_17114 595
47 3300006186 Ga0075369_10000004 Ga0075369_10000004159 596
48 3300047320 Ga0495672_0000016 Ga0495672_0000016_493504_495525 596
49 3300050516 nmdc:mga0sz30_2_c1 nmdc:mga0sz30_2_c1_79577_81430 596
50 3300014325 Ga0163163_10002696 Ga0163163_1000269625 597
51 3300053133 Ga0500655_000147 Ga0500655_000147_12820_14670 598
52 3300053727 Ga0500611_000324 Ga0500611_000324_2670_4583 599
53 3300053087 Ga0500643_000061 Ga0500643_000061_105112_107025 600
54 3300053092 Ga0500583_0001126 Ga0500583_0001126_4789_6609 602
55 3300053093 Ga0500651_0000199 Ga0500651_0000199_24458_26308 602
56 3300053123 Ga0500614_001387 Ga0500614_001387_249_2099 602
57 3300053130 Ga0500642_0000586 Ga0500642_0000586_4767_6587 602
58 3300053147 Ga0500589_000003 Ga0500589_000003_4795_6615 602
59 3300038443 Ga0395901_0002238 Ga0395901_0002238_11591_13441 603
60 3300053142 Ga0500577_0022540 Ga0500577_0022540_35_1852 603
61 3300053090 Ga0500646_0000144 Ga0500646_0000144_11801_13651 604
62 3300053098 Ga0500650_0000003 Ga0500650_0000003_107652_109502 604
63 3300053118 Ga0500594_0000001 Ga0500594_0000001_409672_411522 604
64 3300053142 Ga0500577_0002845 Ga0500577_0002845_1548_3398 604
65 3300025903 Ga0207680_10004808 Ga0207680_100048083 609
66 3300005336 Ga0070680_100004462 Ga0070680_10000446210 611
67 3300005530 Ga0070679_100003999 Ga0070679_1000039997 611
68 3300005563 Ga0068855_100056577 Ga0068855_1000565775 611
69 3300005843 Ga0068860_100062108 Ga0068860_1000621082 611
70 3300005937 Ga0081455_10001799 Ga0081455_1000179920 611
71 3300009993 Ga0105028_100052 Ga0105028_10005211 611
72 3300025921 Ga0207652_10005699 Ga0207652_1000569914 611
73 3300025949 Ga0207667_10039184 Ga0207667_100391847 611
74 3300026041 Ga0207639_10013090 Ga0207639_100130904 611
75 3300046694 Ga0495649_0000057 Ga0495649_0000057_91115_92992 611
76 3300053103 Ga0500555_000001 Ga0500555_000001_18139_19992 611
77 3300005327 Ga0070658_10002074 Ga0070658_1000207419 612
78 3300005327 Ga0070658_10009493 Ga0070658_100094933 612
79 3300005339 Ga0070660_100011324 Ga0070660_1000113245 612
80 3300005355 Ga0070671_100000001 Ga0070671_1000000011319 612
81 3300005458 Ga0070681_10040419 Ga0070681_100404193 612
82 3300005530 Ga0070679_100013711 Ga0070679_1000137117 612
83 3300005842 Ga0068858_100006601 Ga0068858_1000066016 612
84 3300009098 Ga0105245_10000001 Ga0105245_10000001957 612
85 3300013296 Ga0157374_10146127 Ga0157374_101461272 612
86 3300013307 Ga0157372_10000487 Ga0157372_1000048719 612
87 3300025909 Ga0207705_10002528 Ga0207705_1000252818 612
88 3300025909 Ga0207705_10008440 Ga0207705_100084407 612
89 3300025912 Ga0207707_10041371 Ga0207707_100413713 612
90 3300025919 Ga0207657_10005117 Ga0207657_100051178 612
91 3300025921 Ga0207652_10002361 Ga0207652_100023615 612
92 3300025927 Ga0207687_10000001 Ga0207687_10000001517 612
93 3300025927 Ga0207687_10000004 Ga0207687_10000004314 612
94 3300025931 Ga0207644_10000001 Ga0207644_10000001118 612
95 3300026035 Ga0207703_10004597 Ga0207703_100045976 612
96 3300037312 Ga0395899_0004013 Ga0395899_0004013_7172_9079 612
97 3300037418 Ga0395900_0135721 Ga0395900_0135721_319_2226 612
98 3300037466 Ga0395898_0005060 Ga0395898_0005060_5670_7577 612
99 3300037471 Ga0395905_0004226 Ga0395905_0004226_1725_3632 612
100 3300038443 Ga0395901_0036996 Ga0395901_0036996_113_2020 612
101 3300005327 Ga0070658_10000076 Ga0070658_1000007658 613
102 3300005355 Ga0070671_100010374 Ga0070671_1000103746 613
103 3300005458 Ga0070681_10001075 Ga0070681_100010759 613
104 3300013296 Ga0157374_10000590 Ga0157374_1000059035 613
105 3300025909 Ga0207705_10000019 Ga0207705_10000019313 613
106 3300025912 Ga0207707_10018994 Ga0207707_100189942 613
107 3300026088 Ga0207641_10024555 Ga0207641_100245555 613
108 3300037418 Ga0395900_0004863 Ga0395900_0004863_4147_5997 613
109 3300037418 Ga0395900_0150470 Ga0395900_0150470_230_2080 613
110 3300037466 Ga0395898_0009707 Ga0395898_0009707_2020_3870 613
111 3300037471 Ga0395905_0006670 Ga0395905_0006670_2070_3914 613
112 3300048915 Ga0496112_0041968 Ga0496112_0041968_1606_3456 613
113 3300002244 JGI24742J22300_10000001 JGI24742J22300_1000000148 614
114 3300005327 Ga0070658_10000336 Ga0070658_1000033627 614
115 3300005327 Ga0070658_10021355 Ga0070658_100213556 614
116 3300005328 Ga0070676_10001575 Ga0070676_100015756 614
117 3300005530 Ga0070679_100012371 Ga0070679_1000123716 614
118 3300005614 Ga0068856_100004421 Ga0068856_1000044212 614
119 3300025907 Ga0207645_10030446 Ga0207645_100304463 614
120 3300025909 Ga0207705_10000423 Ga0207705_1000042319 614
121 3300025921 Ga0207652_10016622 Ga0207652_100166226 614
122 3300028800 Ga0265338_10005939 Ga0265338_1000593916 614
123 3300037312 Ga0395899_0000969 Ga0395899_0000969_14943_16844 614
124 3300037418 Ga0395900_0000612 Ga0395900_0000612_33991_35892 614
125 3300038443 Ga0395901_0004000 Ga0395901_0004000_2958_4859 614
126 3300049744 Ga0501083_0011386 Ga0501083_0011386_2265_4118 614
127 3300053104 Ga0500556_0002572 Ga0500556_0002572_3278_5131 614

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07973

tRNA_SAD

Threonyl and Alanyl tRNA synthetase second additional domain

136

185

0.98

PF00587

tRNA-synt_2b

tRNA synthetase class II core domain (G, H, P, S and T)

285

481

0.9

PF03129

HGTP_anticodon

Anticodon binding domain

493

589

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
4hwt-assembly1.cif.gz_A crystal structure of human threonyl-trna synthetase bound to a novel inhibitor 0.9425 206 612
8h99-assembly1.cif.gz_B crystal structure of e. coli thrs catalytic domain mutant 0.9409 206 612
8h9a-assembly1.cif.gz_A crystal structure of chemically modified e. coli thrs catalytic domain 2 0.9397 206 612
4hwr-assembly1.cif.gz_A crystal structure of e. coli threonyl-trna synthetase bound to a novel inhibitor 0.9393 205 614
8h9c-assembly1.cif.gz_A-2 crystal structure of chemically modified e. coli thrs catalytic domain 4 0.9381 206 612
ID Description Score Start End Superfamily
1qf6A04 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9404 203 501 3.30.930.10
1qf6A04 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9342 203 501 3.30.930.10
af_Q4DPR0_128_284_3.30.980.10 Alpha Beta;2-Layer Sandwich;Threonyl-tRNA Synthetase; Chain A, domain 2;Threonyl-trna Synthetase; Chain A, domain 2 0.9315 9 186 3.30.980.10
af_Q6ER90_259_568_3.30.930.10 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9311 188 498 3.30.930.10
af_Q6ER90_259_568_3.30.930.10 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9253 188 498 3.30.930.10
ID Description Score Start End GO Terms
AF-A0A838JGE1-F1-model_v4 Threonine--tRNA ligase 0.9723 9 203 GO:0004829
GO:0005524
GO:0006435
AF-T0ZKP9-F1-model_v4 Threonyl-tRNA synthetase 0.9672 424 580 GO:0004829
GO:0005524
GO:0006435
AF-A0A847ZFY0-F1-model_v4 Threonine--tRNA ligase 0.9643 6 200 GO:0004829
GO:0005524
GO:0006435
AF-A0A3S5BG04-F1-model_v4 Aminoacyl-tRNA synthetase class II (G/ P/ S/T) domain-containing protein 0.9637 358 464 GO:0004829
GO:0005524
GO:0005739
GO:0006435
AF-A0A4Y7RZR1-F1-model_v4 Threonine--tRNA ligase (EC 6.1.1.3) (Threonyl-tRNA synthetase) (ThrRS) 0.9616 9 611 GO:0000049
GO:0004829
GO:0005524
GO:0005737
GO:0006435
GO:0016740
GO:0046872

Feature Viewer

pLDDT pTM Quality
86.27 0.79 High
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Predicted Structure (AlphaFold2)

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