F135250

General Info

Members Datasets Scaffolds Average Seq Length
127 115 254 192

Family's Representative Sequence

Representative Sequence 3300042007|Ga0439449_0007017|Ga0439449_0007017_1263_1931
Length 222
Sequence MVLDQFGVGTTEKSACRNRARIPTLGPMRRESALLNVIDVEATCWEGQPPPGSVNEIIEIGLTVVDVAERRRVSRHRVLVRPTRSTVSDFCTELTGLTQAEVQRGVTFAEACRILVEEYGAQERPWASWGEYDRRQFARQSQADGVAYPFGYPTERTHTNAKAVFAAAYGLRKKPGMSHALQIAGLPLEGRHHRGEDDAWNIAALVLDLLGRGAWPVTAPVH

Samples

Sample ID Description Type Environment
1 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
8 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
9 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
10 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
11 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
12 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
13 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
14 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
15 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
16 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
17 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
18 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
19 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
20 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
21 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
22 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
23 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
24 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
25 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
26 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
27 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
28 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
29 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
30 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
31 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
32 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
33 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
34 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
35 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
36 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
37 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
38 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
39 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
40 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
41 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
42 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
43 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
44 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
45 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
46 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
47 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
48 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
49 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
50 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
51 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
52 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
53 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
54 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
55 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
56 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
57 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
58 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
59 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
60 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
61 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
62 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
63 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
65 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
66 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
67 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
68 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
69 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
70 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
71 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
72 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
73 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
74 3300053099 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere Metagenome Endosphere
75 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
76 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
77 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
78 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
79 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
80 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
81 2558860280 Kutzneria sp. 744 Isolate Unclassified
82 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
83 2643221578 Streptomyces sp. Root63 Isolate Unclassified
84 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
85 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
86 2643221647 Streptomyces sp. Root369 Isolate Unclassified
87 2734482000 Kineosporia rhizophila JCM 9960 Isolate Unclassified
88 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
89 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
90 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
91 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
92 2808606448 Streptomyces sp. 193411 Isolate Unclassified
93 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
94 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
95 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
96 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
97 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
98 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
99 2867428634 Streptomyces sp. RP5T Isolate Unclassified
100 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
101 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
102 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
103 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
104 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
105 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
106 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
107 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
108 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
109 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
110 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
111 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
112 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
113 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
114 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
115 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 71.65
Metatranscriptomes 0
Isolates 28.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.24
Nodule 1.57
Rhizoplane 2.36
Rhizosphere 59.06
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0439449_0007017 3300042007 Bacteria 4290
2 rootH2_10109590 3300003320 Bacteria 2133
3 rootH2_10112147 3300003320 Bacteria 2866
4 rootH2_10122068 3300003320 Bacteria 3548
5 rootL2_10319085 3300003322 Bacteria 1911
6 Ga0070683_100426515 3300005329 Bacteria 1265
7 Ga0070680_100302220 3300005336 Bacteria 1357
8 Ga0070714_100774879 3300005435 Bacteria 928
9 Ga0075365_10193242 3300006038 Bacteria 1425
10 Ga0075363_100009182 3300006048 Bacteria 4643
11 Ga0183367_1012 3300015688 Bacteria 347438
12 Ga0268264_11329128 3300028381 Bacteria 729
13 Ga0307517_10013226 3300028786 Bacteria 11234
14 Ga0307512_10004905 3300030522 Bacteria 14292
15 Ga0307513_10036120 3300031456 Bacteria 5519
16 Ga0307509_10302943 3300031507 Bacteria 1345
17 Ga0307508_10001857 3300031616 Bacteria 23316
18 Ga0307516_10048694 3300031730 Bacteria 4170
19 Ga0307405_10030504 3300031731 Bacteria 3162
20 Ga0307416_100152957 3300032002 Bacteria 2119
21 Ga0307507_10014993 3300033179 Bacteria 9168
22 Ga0307507_10247419 3300033179 Bacteria 1157
23 Ga0307510_10457706 3300033180 Bacteria 717
24 Ga0395898_0140070 3300037466 Bacteria 2316
25 Ga0451800_1368752 3300041459 Bacteria 1292
26 Ga0451853_0104243 3300041512 Bacteria 1167
27 Ga0439448_0001838 3300042005 Bacteria 5619
28 Ga0450894_000634 3300042131 Bacteria 5875
29 Ga0450899_007439 3300042135 Bacteria 1194
30 Ga0450906_005405 3300042145 Bacteria 2627
31 Ga0466969_0197888 3300044656 Bacteria 917
32 Ga0466970_0200638 3300044765 Bacteria 1110
33 Ga0495592_0179464 3300046454 Bacteria 1443
34 Ga0495603_0002881 3300046455 Bacteria 10173
35 Ga0495603_0004193 3300046455 Bacteria 8584
36 Ga0495590_0101786 3300046457 Bacteria 1021
37 Ga0495629_0026533 3300046459 Bacteria 4115
38 Ga0495629_0104341 3300046459 Bacteria 1977
39 Ga0495629_0344833 3300046459 Bacteria 1016
40 Ga0495638_0021409 3300046460 Bacteria 4262
41 Ga0495651_0082462 3300046462 Bacteria 2426
42 Ga0495639_0006760 3300046475 Bacteria 4933
43 Ga0495662_0102755 3300046476 Bacteria 1398
44 Ga0495585_0158819 3300046492 Bacteria 1174
45 Ga0495594_0013547 3300046499 Bacteria 4258
46 Ga0495594_0042328 3300046499 Bacteria 2494
47 Ga0495594_0230301 3300046499 Bacteria 1056
48 Ga0495628_0238441 3300046516 Bacteria 1361
49 Ga0495632_0033497 3300046519 Bacteria 2637
50 Ga0495643_0005022 3300046522 Bacteria 9063
51 Ga0495622_0236621 3300046557 Bacteria 806
52 Ga0495633_0090649 3300046558 Bacteria 1421
53 Ga0495611_0028353 3300046648 Bacteria 2451
54 Ga0495635_0071950 3300046663 Bacteria 2370
55 Ga0495588_0007442 3300046674 Bacteria 4984
56 Ga0495588_0008856 3300046674 Bacteria 4629
57 Ga0495657_0009441 3300046675 Bacteria 7391
58 Ga0495623_0118257 3300046679 Bacteria 1599
59 Ga0495613_0017813 3300046689 Bacteria 5293
60 Ga0495670_0006269 3300046691 Bacteria 5836
61 Ga0495589_0043756 3300046794 Bacteria 2228
62 Ga0495589_0113534 3300046794 Bacteria 1307
63 Ga0495581_0078291 3300047315 Bacteria 1913
64 Ga0495604_0049368 3300047317 Bacteria 3270
65 Ga0495636_0002749 3300047318 Bacteria 6787
66 Ga0495636_0217311 3300047318 Bacteria 877
67 Ga0495676_0065554 3300047321 Bacteria 2818
68 Ga0495687_027911 3300047443 Bacteria 2634
69 Ga0495675_0020684 3300047444 Bacteria 4188
70 Ga0495685_123265 3300047447 Bacteria 850
71 Ga0495681_0061205 3300047470 Bacteria 1734
72 Ga0496108_0053617 3300048911 Bacteria 3382
73 Ga0496109_0010056 3300048912 Bacteria 8073
74 Ga0501047_0066050 3300049581 Bacteria 3487
75 Ga0501070_0373284 3300049586 Bacteria 1156
76 Ga0501044_0436640 3300049823 Bacteria 1218
77 Ga0501044_0782461 3300049823 Bacteria 834
78 nmdc:mga03n38_63846_c1 3300050490 Bacteria 1684
79 nmdc:mga0yw44_273836_c1 3300050492 Bacteria 1127
80 Ga0495601_0081337 3300053077 Bacteria 2079
81 Ga0495612_0084828 3300053078 Bacteria 1334
82 Ga0495619_0061549 3300053085 Bacteria 2498
83 Ga0500578_0025859 3300053086 Bacteria 3765
84 Ga0500583_0218352 3300053092 Bacteria 946
85 Ga0500566_0037977 3300053094 Bacteria 2788
86 Ga0500654_052293 3300053099 Bacteria 2185
87 Ga0500628_004380 3300053129 Bacteria 2337
88 Ga0500577_0083918 3300053142 Bacteria 1275
89 Ga0500589_108250 3300053147 Bacteria 1196
90 Ga0500600_0241240 3300053149 Bacteria 817
91 Ga0500633_0030289 3300053160 Bacteria 1738
92 2547405530 2547132111 Bacteria 8013147
93 2559432763 2558860280 Bacteria 11429938
94 2616904390 2616644941 Bacteria 8510691
95 2643898537 2643221578 Bacteria 9213798
96 2644017935 2643221601 Bacteria 7493239
97 2644180777 2643221631 Bacteria 8168043
98 2644266942 2643221647 Bacteria 10741251
99 2734969362 2734482000 Bacteria 5525167
100 2768644497 2767802112 Bacteria 6465194
101 2784585893 2784132148 Bacteria 8627943
102 2785339501 2784746763 Bacteria 9783172
103 2785373936 2784746768 Bacteria 10036182
104 2809229388 2808606448 Bacteria 8656184
105 2819744227 2818991472 Bacteria 10089953
106 2861524034 2861520306 Bacteria 8348283
107 2862290309 2862281513 Bacteria 9621493
108 2862384103 2862382967 Bacteria 10317375
109 2862512252 2862507626 Bacteria 9425308
110 2863407818 2863404153 Bacteria 9672205
111 2867437221 2867428634 Bacteria 9590268
112 2877676911 2877676314 Bacteria 9512378
113 2912764435 2912757875 Bacteria 7940295
114 2917741739 2917736166 Bacteria 9690793
115 2954381822 2954380949 Bacteria 10050426
116 2954692645 2954691527 Bacteria 10720516
117 2954712304 2954711539 Bacteria 10867210
118 2954722250 2954721474 Bacteria 10456478
119 2954739600 2954731030 Bacteria 10243860
120 2954741138 2954740390 Bacteria 10229294
121 2954758426 2954749733 Bacteria 10366972
122 2966599703 2966598605 Bacteria 7676064
123 2990093790 2990088156 Bacteria 6657676
124 8008565281 8008558824 Bacteria 10610750
125 8023627799 8023623736 Bacteria 8593882
126 8025537189 8025530807 Bacteria 8495698
127 8048409714 8048406513 Bacteria 8936924
128 Ga0439449_0007017
129 rootH2_10109590
130 rootH2_10112147
131 rootH2_10122068
132 rootL2_10319085
133 Ga0070683_100426515
134 Ga0070680_100302220
135 Ga0070714_100774879
136 Ga0075365_10193242
137 Ga0075363_100009182
138 Ga0183367_1012
139 Ga0268264_11329128
140 Ga0307517_10013226
141 Ga0307512_10004905
142 Ga0307513_10036120
143 Ga0307509_10302943
144 Ga0307508_10001857
145 Ga0307516_10048694
146 Ga0307405_10030504
147 Ga0307416_100152957
148 Ga0307507_10014993
149 Ga0307507_10247419
150 Ga0307510_10457706
151 Ga0395898_0140070
152 Ga0451800_1368752
153 Ga0451853_0104243
154 Ga0439448_0001838
155 Ga0450894_000634
156 Ga0450899_007439
157 Ga0450906_005405
158 Ga0466969_0197888
159 Ga0466970_0200638
160 Ga0495592_0179464
161 Ga0495603_0002881
162 Ga0495603_0004193
163 Ga0495590_0101786
164 Ga0495629_0026533
165 Ga0495629_0104341
166 Ga0495629_0344833
167 Ga0495638_0021409
168 Ga0495651_0082462
169 Ga0495639_0006760
170 Ga0495662_0102755
171 Ga0495585_0158819
172 Ga0495594_0013547
173 Ga0495594_0042328
174 Ga0495594_0230301
175 Ga0495628_0238441
176 Ga0495632_0033497
177 Ga0495643_0005022
178 Ga0495622_0236621
179 Ga0495633_0090649
180 Ga0495611_0028353
181 Ga0495635_0071950
182 Ga0495588_0007442
183 Ga0495588_0008856
184 Ga0495657_0009441
185 Ga0495623_0118257
186 Ga0495613_0017813
187 Ga0495670_0006269
188 Ga0495589_0043756
189 Ga0495589_0113534
190 Ga0495581_0078291
191 Ga0495604_0049368
192 Ga0495636_0002749
193 Ga0495636_0217311
194 Ga0495676_0065554
195 Ga0495687_027911
196 Ga0495675_0020684
197 Ga0495685_123265
198 Ga0495681_0061205
199 Ga0496108_0053617
200 Ga0496109_0010056
201 Ga0501047_0066050
202 Ga0501070_0373284
203 Ga0501044_0436640
204 Ga0501044_0782461
205 nmdc:mga03n38_63846_c1
206 nmdc:mga0yw44_273836_c1
207 Ga0495601_0081337
208 Ga0495612_0084828
209 Ga0495619_0061549
210 Ga0500578_0025859
211 Ga0500583_0218352
212 Ga0500566_0037977
213 Ga0500654_052293
214 Ga0500628_004380
215 Ga0500577_0083918
216 Ga0500589_108250
217 Ga0500600_0241240
218 Ga0500633_0030289
219 2547405530
220 2559432763
221 2616904390
222 2643898537
223 2644017935
224 2644180777
225 2644266942
226 2734969362
227 2768644497
228 2784585893
229 2785339501
230 2785373936
231 2809229388
232 2819744227
233 2861524034
234 2862290309
235 2862384103
236 2862512252
237 2863407818
238 2867437221
239 2877676911
240 2912764435
241 2917741739
242 2954381822
243 2954692645
244 2954712304
245 2954722250
246 2954739600
247 2954741138
248 2954758426
249 2966599703
250 2990093790
251 8008565281
252 8023627799
253 8025537189
254 8048409714

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00929

RNase_T

Exonuclease

37

206

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
1w0h-assembly1.cif.gz_A crystallographic structure of the nuclease domain of 3'hexo, a deddh family member, bound to ramp 0.9073 3 185
4qoz-assembly2.cif.gz_E crystal structure of the histone mrna stem-loop, stem-loop binding protein (phosphorylated), and 3'hexo ternary complex 0.9052 3 179
4l8r-assembly2.cif.gz_E structure of mrna stem-loop, human stem-loop binding protein and 3'hexo ternary complex 0.8962 3 179
1w0h-assembly1.cif.gz_A crystallographic structure of the nuclease domain of 3'hexo, a deddh family member, bound to ramp 0.8934 3 185
1zbu-assembly2.cif.gz_B crystal structure of full-length 3'-exonuclease 0.8838 3 185
ID Description Score Start End Superfamily
af_Q4CLD5_1_175_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9102 26 179 3.30.420.10
af_Q95RQ4_51_278_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8987 3 184 3.30.420.10
af_I1M0N0_130_346_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8986 3 179 3.30.420.10
af_Q4DHR3_71_271_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8985 3 179 3.30.420.10
af_A4I4A7_624_822_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8861 3 179 3.30.420.10
ID Description Score Start End GO Terms
AF-A0A1G9TTA9-F1-model_v4 Inhibitor of the KinA pathway to sporulation, predicted exonuclease 1.002 2 183 GO:0000175
GO:0003676
GO:0006259
AF-A0A1Q4YJT7-F1-model_v4 DNA polymerase III 1.002 2 182 GO:0000175
GO:0003676
GO:0006259
AF-A0A327TW12-F1-model_v4 Inhibitor of KinA sporulation pathway (Predicted exonuclease) 1.002 4 182 GO:0000175
GO:0003676
GO:0006259
AF-A0A1I2V152-F1-model_v4 Inhibitor of the KinA pathway to sporulation, predicted exonuclease 1.001 3 182 GO:0000175
GO:0003676
GO:0006259
AF-A0A3N1MGT9-F1-model_v4 deleted 1.001 2 182

Map