F128575

General Info

Members Datasets Scaffolds Average Seq Length
125 98 250 777

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2885350715|2885352018
Length 850
Sequence ILTIREVVELLKINEKDRLQACLGRQNSRLQGRRIVAVPSAGNRKLDKAQGRRATGVVGSMTNEADTCRKFVVPKLQSAGWDNDPHSIAEQRTITDGRVIPVGKGFVRKLPKRVDYLLRYTRDLPLAVVEAKASYKSATDAVQQARNYAEILDLKYAYATNGTEIIEIDYFKGTETRVADFPAPDDLWRRYQAGSGIDTPERVEHLIAPYNTVGGKPPRYYQQIAINRTVEAILAGRKRLLPTMATGTGKTIVAFQICWKLWSSRWNRTGEHRKPRILFLADRNILIDDPKDKTFAPFGDARHKIESGEIVKSREMYFAIYQALAEDERRAGLFRDYPPDFFDLIIVDECHRGSARDDSSWRVILEHFKPAYQLGMTATPLREDNRDTYLYFGNPIYEYSLRQGIDDGFLAPYRVHRIVTQWDAAGWRPTKDEVDRFGRAIPDDEYQTKDFERTIALRARTQAIARHLTDFLKKTDRFAKTIVFCVDQEHASEMRQALVNLNADLVAQYPDYVTRVTAEEGAIGRGHLSKFQDLETKTPVILTSSQLLTTGVDAPTCKNVVLARVVGSMSEFKQIIGRGTRLRDDYGKLWFNILDYTGSATRMFADPNFDGDPARITEDEVNDAGETTATTEIIPEGQEPEPAPPEEGEPGVIEPPTGEPRKFYFDGGQVEVVAHLVHELDPNGKQLRVVKYTDYAAESVRSLAPTSAELRKRWADADQRSEIIAALAERGIDFDVLAEQTGQTDADPFDLLCHLAFNAPLRTRRERAQRLKSERKDYFDKFSPEARQVLDELLEKYAEHGDAQFVLPDVLKVPPISTHGQPAEIIKLFGGPDELRRAVNDLQGLLYGAN

Samples

Sample ID Description Type Environment
1 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
2 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
3 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
4 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
5 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
6 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
7 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
8 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
9 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
10 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
11 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
12 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
15 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
16 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
17 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
18 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
19 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
20 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
21 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
22 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
23 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
24 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
25 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
26 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
38 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
39 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
40 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
41 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
42 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
43 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
44 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
45 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
46 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
47 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
48 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
49 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
50 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
51 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
52 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
53 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
54 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
55 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
56 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
57 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
58 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
59 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
60 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
61 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
62 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
63 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
64 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
65 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
66 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
67 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
68 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
69 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
70 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
71 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
72 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
73 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
74 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
75 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
76 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
77 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
78 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
79 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
80 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
84 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
85 2885350715 Mesorhizobium sp. M4A.F.Ca.ET.022.05.2.1 Isolate Nodule
86 2513237093 Rhizobium leguminosarum bv. phaseoli FA23 Isolate Nodule
87 2515154114 Rhizobium ruizarguesonis Vh3 Isolate Nodule
88 2643221574 Brevundimonas sp. Root608 Isolate Unclassified
89 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
90 2687453130 Dyella thiooxydans ATSB10 Isolate Unclassified
91 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
92 2802429606 Rhizobium sophoriradicis JJW1 Isolate Nodule
93 2842341865 Rhizobium leguminosarum SEMIA 4011 Isolate Nodule
94 2842447887 Rhizobium esperanzae SEMIA 4055 Isolate Nodule
95 2879163058 Sphingomonas pokkalii L3B27 Isolate Rhizosphere
96 2924726620 Mesorhizobium sp. M1A.F.Ca.IN.020.03.2.1 Isolate Nodule
97 2935777560 Bradyrhizobium sp. LB14.3 Isolate Nodule
98 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.8
Metatranscriptomes 0
Isolates 11.2

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4
Nodule 7.2
Rhizoplane 0.8
Rhizosphere 76.8
Stem 0
Stem Tuber 0
Unclassified 0.8

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055531_10010692 3300003794 Bacteria 4527
2 Ga0070703_10000083 3300005406 Bacteria 47808
3 Ga0070708_100001489 3300005445 Bacteria 17884
4 Ga0070706_100000025 3300005467 Bacteria 156371
5 Ga0070706_100004307 3300005467 Bacteria 13782
6 Ga0070706_100013531 3300005467 Bacteria 7546
7 Ga0070706_100090777 3300005467 Bacteria 2833
8 Ga0070707_100010628 3300005468 Bacteria 8574
9 Ga0070707_100014455 3300005468 Bacteria 7398
10 Ga0070698_100001731 3300005471 Bacteria 24326
11 Ga0070697_100023210 3300005536 Bacteria 4933
12 Ga0070697_100023382 3300005536 Bacteria 4914
13 Ga0070695_100004116 3300005545 Bacteria 8497
14 Ga0068864_100007208 3300005618 Bacteria 9136
15 Ga0068863_100003580 3300005841 Bacteria 15327
16 Ga0081539_10000058 3300005985 Bacteria 256212
17 Ga0081539_10009848 3300005985 Bacteria 7890
18 Ga0070717_10001341 3300006028 Bacteria 16912
19 Ga0075428_100017209 3300006844 Bacteria 7989
20 Ga0075433_10003659 3300006852 Bacteria 11883
21 Ga0105243_10011246 3300009148 Bacteria 6768
22 Ga0105241_10006310 3300009174 Bacteria 8748
23 Ga0105242_10000771 3300009176 Bacteria 24928
24 Ga0105237_10011709 3300009545 Bacteria 9276
25 Ga0157374_10013970 3300013296 Bacteria 7019
26 Ga0163162_10019749 3300013306 Bacteria 6616
27 Ga0157372_10115675 3300013307 Bacteria 3075
28 Ga0213876_10011431 3300021384 Bacteria 4739
29 Ga0209437_100714 3300025233 Bacteria 17114
30 Ga0209233_1000431 3300025261 Bacteria 30230
31 Ga0209025_1015026 3300025294 Bacteria 4704
32 Ga0209257_1000046 3300025304 Bacteria 477765
33 Ga0207653_10000032 3300025885 Bacteria 105670
34 Ga0207684_10000072 3300025910 Bacteria 185716
35 Ga0207684_10001096 3300025910 Bacteria 30364
36 Ga0207684_10002545 3300025910 Bacteria 18305
37 Ga0207684_10079586 3300025910 Bacteria 2788
38 Ga0207671_10005295 3300025914 Bacteria 11958
39 Ga0207646_10000286 3300025922 Bacteria 69509
40 Ga0207686_10001116 3300025934 Bacteria 15562
41 Ga0207640_10012075 3300025981 Bacteria 4910
42 Ga0207708_10013236 3300026075 Bacteria 6159
43 Ga0207641_10004620 3300026088 Bacteria 11891
44 Ga0207676_10007612 3300026095 Bacteria 7690
45 Ga0209371_1001313 3300027312 Bacteria 17380
46 Ga0265356_1001039 3300028017 Unclassified 4364
47 Ga0265323_10000025 3300028653 Bacteria 82188
48 Ga0265338_10010630 3300028800 Bacteria 10754
49 Ga0268256_1001124 3300030500 Bacteria 17380
50 Ga0265332_10001567 3300031238 Bacteria 12539
51 Ga0265331_10000940 3300031250 Bacteria 23284
52 Ga0265316_10001552 3300031344 Bacteria 24614
53 Ga0265316_10001709 3300031344 Bacteria 23297
54 Ga0265314_10005066 3300031711 Bacteria 12005
55 Ga0316578_10019261 3300031728 Bacteria 3752
56 Ga0307516_10052025 3300031730 Bacteria 4012
57 Ga0307407_10000071 3300031903 Bacteria 39282
58 Ga0307510_10000100 3300033180 Bacteria 66675
59 Ga0373950_0000132 3300034818 Bacteria 12712
60 Ga0316584_0028009 3300036712 Bacteria 4151
61 Ga0395900_0002822 3300037418 Bacteria 18962
62 Ga0395900_0007149 3300037418 Bacteria 11569
63 Ga0400489_13845 3300039093 Bacteria 4177
64 Ga0436365_0819105 3300039437 Bacteria 9608
65 Ga0436365_1312713 3300039437 Bacteria 3125
66 Ga0451577_0002829 3300042876 Bacteria 19964
67 Ga0451577_0004800 3300042876 Bacteria 14115
68 Ga0451577_0017451 3300042876 Archaea 6632
69 Ga0451577_0033429 3300042876 Bacteria 4636
70 Ga0451577_0056170 3300042876 Bacteria 3511
71 Ga0453683_0001960 3300044673 Bacteria 16670
72 Ga0453683_0002673 3300044673 Bacteria 13633
73 Ga0453683_0023377 3300044673 Bacteria 3940
74 Ga0453684_0000145 3300044712 Archaea 313029
75 Ga0453684_0000232 3300044712 Bacteria 240951
76 Ga0453684_0000495 3300044712 Bacteria 155165
77 Ga0453684_0001183 3300044712 Bacteria 80814
78 Ga0453684_0002489 3300044712 Archaea 44511
79 Ga0453684_0003334 3300044712 Bacteria 36440
80 Ga0453684_0004149 3300044712 Bacteria 31352
81 Ga0451576_0005250 3300045051 Bacteria 16354
82 Ga0451576_0006567 3300045051 Bacteria 14233
83 Ga0451576_0009856 3300045051 Bacteria 11038
84 Ga0495592_0000363 3300046454 Bacteria 35909
85 Ga0495590_0000136 3300046457 Bacteria 43748
86 Ga0495594_0000056 3300046499 Bacteria 49399
87 Ga0495583_0011153 3300046506 Bacteria 5179
88 Ga0495608_0014228 3300046511 Bacteria 5522
89 Ga0495618_0019501 3300046514 Bacteria 4173
90 Ga0495628_0000977 3300046516 Bacteria 26152
91 Ga0495630_0010242 3300046517 Bacteria 6764
92 Ga0495631_0027639 3300046518 Bacteria 2594
93 Ga0495644_0000013 3300046523 Bacteria 94729
94 Ga0495642_0016181 3300046528 Bacteria 2906
95 Ga0495625_0005588 3300046660 Bacteria 11407
96 Ga0495657_0004132 3300046675 Bacteria 11623
97 Ga0495669_0009390 3300046684 Bacteria 4122
98 Ga0495669_0012787 3300046684 Bacteria 3573
99 Ga0495670_0039467 3300046691 Bacteria 2355
100 Ga0495673_0003255 3300047469 Bacteria 10810
101 Ga0496103_0007649 3300048906 Bacteria 6428
102 Ga0496116_0013096 3300048919 Bacteria 6719
103 Ga0496117_0000474 3300048920 Bacteria 66732
104 Ga0496118_0000088 3300048921 Bacteria 176559
105 Ga0496124_0001799 3300048927 Bacteria 29809
106 Ga0496126_0001350 3300048929 Bacteria 38941
107 Ga0501039_0018502 3300049575 Bacteria 5348
108 Ga0501043_0000690 3300049579 Bacteria 29823
109 Ga0501047_0011093 3300049581 Bacteria 8528
110 Ga0501035_0000359 3300049822 Bacteria 52585
111 nmdc:mga0a205_4981_c1 3300050515 Bacteria 11947
112 2885352018 2885350715 Bacteria 6787678
113 2513630364 2513237093 Bacteria 7545552
114 2515647141 2515154114 Bacteria 7848616
115 2643882483 2643221574 Bacteria 2789653
116 2644547997 2643221699 Bacteria 5731501
117 2687583333 2687453130 Bacteria 4227172
118 2792579935 2791355082 Bacteria 5973319
119 2805938257 2802429606 Bacteria 6346811
120 2842342768 2842341865 Bacteria 7003929
121 2842453679 2842447887 Bacteria 6754142
122 2879165748 2879163058 Bacteria 4223965
123 2924726960 2924726620 Bacteria 6271473
124 2935781676 2935777560 Bacteria 8077691
125 8021649358 8021648035 Bacteria 4772378
126 Ga0055531_10010692
127 Ga0070703_10000083
128 Ga0070708_100001489
129 Ga0070706_100000025
130 Ga0070706_100004307
131 Ga0070706_100013531
132 Ga0070706_100090777
133 Ga0070707_100010628
134 Ga0070707_100014455
135 Ga0070698_100001731
136 Ga0070697_100023210
137 Ga0070697_100023382
138 Ga0070695_100004116
139 Ga0068864_100007208
140 Ga0068863_100003580
141 Ga0081539_10000058
142 Ga0081539_10009848
143 Ga0070717_10001341
144 Ga0075428_100017209
145 Ga0075433_10003659
146 Ga0105243_10011246
147 Ga0105241_10006310
148 Ga0105242_10000771
149 Ga0105237_10011709
150 Ga0157374_10013970
151 Ga0163162_10019749
152 Ga0157372_10115675
153 Ga0213876_10011431
154 Ga0209437_100714
155 Ga0209233_1000431
156 Ga0209025_1015026
157 Ga0209257_1000046
158 Ga0207653_10000032
159 Ga0207684_10000072
160 Ga0207684_10001096
161 Ga0207684_10002545
162 Ga0207684_10079586
163 Ga0207671_10005295
164 Ga0207646_10000286
165 Ga0207686_10001116
166 Ga0207640_10012075
167 Ga0207708_10013236
168 Ga0207641_10004620
169 Ga0207676_10007612
170 Ga0209371_1001313
171 Ga0265356_1001039
172 Ga0265323_10000025
173 Ga0265338_10010630
174 Ga0268256_1001124
175 Ga0265332_10001567
176 Ga0265331_10000940
177 Ga0265316_10001552
178 Ga0265316_10001709
179 Ga0265314_10005066
180 Ga0316578_10019261
181 Ga0307516_10052025
182 Ga0307407_10000071
183 Ga0307510_10000100
184 Ga0373950_0000132
185 Ga0316584_0028009
186 Ga0395900_0002822
187 Ga0395900_0007149
188 Ga0400489_13845
189 Ga0436365_0819105
190 Ga0436365_1312713
191 Ga0451577_0002829
192 Ga0451577_0004800
193 Ga0451577_0017451
194 Ga0451577_0033429
195 Ga0451577_0056170
196 Ga0453683_0001960
197 Ga0453683_0002673
198 Ga0453683_0023377
199 Ga0453684_0000145
200 Ga0453684_0000232
201 Ga0453684_0000495
202 Ga0453684_0001183
203 Ga0453684_0002489
204 Ga0453684_0003334
205 Ga0453684_0004149
206 Ga0451576_0005250
207 Ga0451576_0006567
208 Ga0451576_0009856
209 Ga0495592_0000363
210 Ga0495590_0000136
211 Ga0495594_0000056
212 Ga0495583_0011153
213 Ga0495608_0014228
214 Ga0495618_0019501
215 Ga0495628_0000977
216 Ga0495630_0010242
217 Ga0495631_0027639
218 Ga0495644_0000013
219 Ga0495642_0016181
220 Ga0495625_0005588
221 Ga0495657_0004132
222 Ga0495669_0009390
223 Ga0495669_0012787
224 Ga0495670_0039467
225 Ga0495673_0003255
226 Ga0496103_0007649
227 Ga0496116_0013096
228 Ga0496117_0000474
229 Ga0496118_0000088
230 Ga0496124_0001799
231 Ga0496126_0001350
232 Ga0501039_0018502
233 Ga0501043_0000690
234 Ga0501047_0011093
235 Ga0501035_0000359
236 nmdc:mga0a205_4981_c1
237 2885352018
238 2513630364
239 2515647141
240 2643882483
241 2644547997
242 2687583333
243 2792579935
244 2805938257
245 2842342768
246 2842453679
247 2879165748
248 2924726960
249 2935781676
250 8021649358

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08463

EcoEI_R_C

EcoEI R protein C-terminal

690

847

0.94

PF04851

ResIII

Type III restriction enzyme, res subunit

215

382

0.9

PF18766

SWI2_SNF2

SWI2/SNF2 ATPase

221

450

0.8

PF00270

DEAD

DEAD/DEAH box helicase

220

387

0.77

PF00271

Helicase_C

Helicase conserved C-terminal domain

463

583

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
3h1t-assembly1.cif.gz_A the fragment structure of a putative hsdr subunit of a type i restriction enzyme from vibrio vulnificus yj016 0.9036 5 572
3h1t-assembly1.cif.gz_A the fragment structure of a putative hsdr subunit of a type i restriction enzyme from vibrio vulnificus yj016 0.9019 5 572
6jtz-assembly1.cif.gz_B crystal structure of hrecq1_d2-zn-wh containing mutation on beta-hairpin 0.8491 408 539
6jtz-assembly1.cif.gz_A crystal structure of hrecq1_d2-zn-wh containing mutation on beta-hairpin 0.8442 408 539
5gi4-assembly1.cif.gz_A dead-box rna helicase 0.8414 408 540
ID Description Score Start End Superfamily
3h1tA01 Alpha Beta;Alpha-Beta Complex;tt1808, chain A; 0.977 8 140 3.90.1570.30
3h1tA01 Alpha Beta;Alpha-Beta Complex;tt1808, chain A; 0.9488 8 140 3.90.1570.30
3h1tA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9475 142 341 3.40.50.300
3h1tA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9419 142 341 3.40.50.300
af_Q9FT72_227_446_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8682 408 539 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A1C3XS53-F1-model_v4 Type I restriction enzyme R protein N terminus (HSDR_N) 0.987 8 230 GO:0003677
GO:0005524
GO:0005829
GO:0016787
AF-A0A528LHS8-F1-model_v4 DEAD/DEAH box helicase 0.9859 8 208 GO:0003677
GO:0004386
GO:0005524
GO:0016787
AF-A0A0D6PID7-F1-model_v4 Type I site-specific deoxyribonuclease 0.9781 65 266 GO:0003677
GO:0005524
GO:0005829
GO:0016787
AF-A0A528LHS8-F1-model_v4 DEAD/DEAH box helicase 0.9763 8 208 GO:0003677
GO:0004386
GO:0005524
GO:0016787
AF-A0A3D0QIB1-F1-model_v4 DEAD/DEAH box helicase 0.9749 8 346 GO:0003677
GO:0004386
GO:0005524
GO:0005829
GO:0016787

Map