F125705

General Info

Members Datasets Scaffolds Average Seq Length
125 93 125 672

Family's Representative Sequence

Representative Sequence 3300005535|Ga0070684_100000330|Ga0070684_10000033034
Length 680
Sequence MSIGPLNKKQAAERVVKLRELINDYRYHYHVLDQSIMSEAAADSLKHELAELEERFPDLKTADSPTVRIAGEPLPGFSQVRHAQRMVSLNDVFNREELEAWVTRIQKLAPGQPLEFFADVKMDGLACALHYEDGVLVRAVTRGDGQVGEDVTANVRTIDSVPTTLRAARGYEQFLRGRTEIRGEVVIFKHDFEALNAERKAQGLPLFANPRNLAAGSIRQLDPKLAAARPLRFRAWEILRDNPRELPTYVQAYQAIRALGLAANDKTELLKNVDQIMEFADSWATERVKLPFNTDGLVIKINDRALYDQLGVVGKAPRGAVAFKYAAEEATTVVKDIVLSIGRTGAATPVAVFDPVVVAGSTVQHASLHNADEIERKDIRVGDTVVIFKAGDIIPQVLKVLTKLRPKTAKRFDMEKELARQYPELAFDRPEGEVVYRVKGVTGPLLLKRGLEHFASKAALDIDGLGEKNVVALVDAGLARDLASIYTITKEQLLQLDRFAELSASNLVQAIAATKTPELPRFIYGLGIRHVGQQTAIDLAEHFGSLDKLAAATLDELLQVEGIGDTVAESLLAWFADPDNEKLLQEFARVGVKPHFQSRARGPLHGKSFVITGTLEQLSRDEAADKIRALGGTFQSSVGKDTSYLVVGKNVGASKLAKADKLGTKQISEQELLDLIRLSS

Samples

Sample ID Description Type Environment
1 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
18 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
19 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
22 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
23 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
29 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
46 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
48 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
49 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
50 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
51 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
52 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
53 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
54 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
55 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
57 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
58 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
60 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
62 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
63 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
65 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
66 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
67 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
68 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
69 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
70 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
71 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
72 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
73 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
74 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
75 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
76 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
77 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
78 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
79 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
80 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
81 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
82 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
83 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
84 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
85 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
86 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
87 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
88 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
89 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
90 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
91 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
92 3300053722 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 endosphere Metagenome Endosphere
93 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 41.6
Nodule 0
Rhizoplane 0
Rhizosphere 57.6
Stem 0
Stem Tuber 0
Unclassified 0.8

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24737J22298_10000025 3300001990 Bacteria 44387
2 JGI24735J21928_10000075 3300002067 Bacteria 41276
3 Ga0070658_10001614 3300005327 Bacteria 19070
4 Ga0070658_10063582 3300005327 Bacteria 3009
5 Ga0070683_100003499 3300005329 Bacteria 12770
6 Ga0070670_100044889 3300005331 Bacteria 3799
7 Ga0068869_100024102 3300005334 Unclassified 4213
8 Ga0070666_10047455 3300005335 Bacteria 2883
9 Ga0070671_100000001 3300005355 Bacteria 1228151
10 Ga0070671_100021627 3300005355 Bacteria 5254
11 Ga0070667_100000683 3300005367 Bacteria 32867
12 Ga0070714_100050567 3300005435 Bacteria 3541
13 Ga0070679_100038755 3300005530 Bacteria 4738
14 Ga0070684_100000330 3300005535 Bacteria 32766
15 Ga0070686_100005004 3300005544 Bacteria 7315
16 Ga0068855_100006896 3300005563 Bacteria 13782
17 Ga0068857_100071625 3300005577 Bacteria 3088
18 Ga0068856_100000037 3300005614 Bacteria 120033
19 Ga0068856_100000445 3300005614 Bacteria 45664
20 Ga0068856_100026360 3300005614 Bacteria 5668
21 Ga0068862_100019113 3300005844 Bacteria 5713
22 Ga0075365_10000009 3300006038 Bacteria 111957
23 Ga0075365_10001235 3300006038 Bacteria 11306
24 Ga0075365_10008426 3300006038 Bacteria 5853
25 Ga0075363_100030485 3300006048 Bacteria 2793
26 Ga0075364_10000247 3300006051 Bacteria 26092
27 Ga0075362_10004927 3300006177 Unclassified 4836
28 Ga0075369_10000001 3300006186 Bacteria 299616
29 Ga0075369_10000010 3300006186 Bacteria 77564
30 Ga0075366_10000001 3300006195 Bacteria 569172
31 Ga0075366_10000039 3300006195 Bacteria 46368
32 Ga0075366_10000933 3300006195 Bacteria 14202
33 Ga0075428_100039756 3300006844 Bacteria 5177
34 Ga0075430_100029773 3300006846 Bacteria 4634
35 Ga0105240_10057456 3300009093 Bacteria 4861
36 Ga0111539_10001451 3300009094 Bacteria 31651
37 Ga0105238_10112226 3300009551 Bacteria 2706
38 Ga0105249_10002278 3300009553 Bacteria 16666
39 Ga0105239_10000301 3300010375 Bacteria 73122
40 Ga0157373_10000061 3300013100 Bacteria 95718
41 Ga0157369_10084555 3300013105 Bacteria 3391
42 Ga0157374_10002315 3300013296 Bacteria 16055
43 Ga0157374_10005056 3300013296 Bacteria 11060
44 Ga0157372_10110250 3300013307 Bacteria 3152
45 Ga0163163_10010347 3300014325 Bacteria 8381
46 Ga0163163_10012258 3300014325 Bacteria 7806
47 Ga0207705_10002124 3300025909 Bacteria 15378
48 Ga0207652_10045561 3300025921 Bacteria 3739
49 Ga0207664_10006175 3300025929 Bacteria 8219
50 Ga0207644_10000001 3300025931 Bacteria 1243214
51 Ga0207644_10041880 3300025931 Unclassified 3242
52 Ga0207661_10001032 3300025944 Bacteria 18468
53 Ga0207661_10001500 3300025944 Bacteria 15815
54 Ga0207667_10007092 3300025949 Bacteria 13530
55 Ga0207667_10095763 3300025949 Unclassified 3064
56 Ga0207712_10001823 3300025961 Bacteria 14071
57 Ga0207658_10041522 3300025986 Bacteria 3331
58 Ga0207702_10000001 3300026078 Bacteria 895738
59 Ga0207702_10000057 3300026078 Bacteria 131118
60 Ga0207702_10030001 3300026078 Bacteria 4530
61 Ga0209813_10000001 3300027866 Bacteria 280406
62 Ga0268265_10011323 3300028380 Bacteria 6032
63 Ga0265338_10116448 3300028800 Bacteria 2141
64 Ga0395900_0000001 3300037418 Bacteria 931146
65 Ga0395900_0003182 3300037418 Bacteria 17781
66 Ga0395900_0207735 3300037418 Bacteria 1978
67 Ga0395898_0000002 3300037466 Bacteria 931013
68 Ga0395898_0002981 3300037466 Bacteria 19231
69 Ga0395901_0000006 3300038443 Bacteria 514112
70 Ga0395901_0034106 3300038443 Bacteria 5256
71 Ga0495622_0000191 3300046557 Bacteria 49391
72 Ga0495588_0000432 3300046674 Bacteria 21927
73 Ga0495649_0002766 3300046694 Bacteria 12211
74 Ga0496126_0087196 3300048929 Viruses 2750
75 Ga0501031_0000319 3300049568 Bacteria 27520
76 Ga0501032_0000624 3300049569 Bacteria 28751
77 Ga0501036_0027821 3300049572 Unclassified 4779
78 Ga0501037_0000031 3300049573 Bacteria 133137
79 Ga0501043_0000366 3300049579 Bacteria 40919
80 Ga0501046_0000819 3300049580 Bacteria 30340
81 Ga0501047_0000032 3300049581 Bacteria 208294
82 Ga0501048_0000013 3300049582 Bacteria 76554
83 Ga0501035_0002961 3300049822 Bacteria 16332
84 Ga0501044_0005076 3300049823 Bacteria 14691
85 nmdc:mga03683_569_c1 3300050489 Bacteria 8235
86 nmdc:mga03n38_27475_c1 3300050490 Bacteria 2361
87 nmdc:mga00v17_172_c1 3300050491 Bacteria 37851
88 nmdc:mga00v17_25263_c1 3300050491 Bacteria 3452
89 nmdc:mga0yw44_1496_c1 3300050492 Bacteria 9316
90 nmdc:mga0yw44_2_c1 3300050492 Bacteria 586884
91 nmdc:mga0yw44_346_c1 3300050492 Bacteria 16299
92 nmdc:mga0k408_13_c1 3300050493 Bacteria 48149
93 nmdc:mga0k408_1_c1 3300050493 Bacteria 1089059
94 nmdc:mga0k408_8239_c1 3300050493 Bacteria 5590
95 nmdc:mga0k408_923_c1 3300050493 Bacteria 16086
96 nmdc:mga06z11_15_c1 3300050494 Bacteria 82672
97 nmdc:mga04h51_1_c1 3300050495 Bacteria 273320
98 nmdc:mga07m45_28540_c1 3300050496 Bacteria 3080
99 nmdc:mga0qj67_24475_c1 3300050509 Bacteria 4654
100 nmdc:mga0sz30_1_c1 3300050516 Bacteria 796501
101 nmdc:mga0sz30_3_c9 3300050516 Bacteria 81468
102 Ga0500610_0000006 3300053079 Bacteria 134304
103 Ga0500643_000022 3300053087 Bacteria 277519
104 Ga0500644_0000557 3300053088 Bacteria 14805
105 Ga0500644_0001385 3300053088 Bacteria 6461
106 Ga0500646_0000007 3300053090 Bacteria 115744
107 Ga0500583_0000082 3300053092 Bacteria 54810
108 Ga0500583_0000277 3300053092 Bacteria 17960
109 Ga0500651_0000001 3300053093 Bacteria 529808
110 Ga0500641_0000001 3300053096 Bacteria 1115973
111 Ga0500650_0015591 3300053098 Bacteria 3242
112 Ga0500555_000001 3300053103 Bacteria 1353713
113 Ga0500555_000002 3300053103 Bacteria 1314346
114 Ga0500562_000001 3300053108 Bacteria 1178987
115 Ga0500562_000002 3300053108 Bacteria 977234
116 Ga0500594_0000018 3300053118 Bacteria 61549
117 Ga0500614_000001 3300053123 Bacteria 1274484
118 Ga0500652_000001 3300053131 Bacteria 946868
119 Ga0500652_000022 3300053131 Bacteria 118313
120 Ga0500561_0000001 3300053137 Bacteria 957685
121 Ga0500577_0000302 3300053142 Bacteria 12795
122 Ga0500589_000013 3300053147 Bacteria 109118
123 Ga0500616_0000005 3300053153 Bacteria 961725
124 Ga0500649_000004 3300053722 Bacteria 139374
125 Ga0500611_000309 3300053727 Bacteria 5117

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300038443 Ga0395901_0034106 Ga0395901_0034106_40_1707 555
2 3300037418 Ga0395900_0207735 Ga0395900_0207735_59_1837 591
3 3300048929 Ga0496126_0087196 Ga0496126_0087196_659_2623 654
4 3300053088 Ga0500644_0001385 Ga0500644_0001385_2954_4984 655
5 3300053142 Ga0500577_0000302 Ga0500577_0000302_41_2071 655
6 3300050493 nmdc:mga0k408_1_c1 nmdc:mga0k408_1_c1_535843_537822 656
7 3300050516 nmdc:mga0sz30_3_c9 nmdc:mga0sz30_3_c9_44302_46281 656
8 3300005334 Ga0068869_100024102 Ga0068869_1000241023 659
9 3300053090 Ga0500646_0000007 Ga0500646_0000007_66371_68386 660
10 3300053153 Ga0500616_0000005 Ga0500616_0000005_256117_258135 661
11 3300005335 Ga0070666_10047455 Ga0070666_100474552 662
12 3300053108 Ga0500562_000001 Ga0500562_000001_137036_139063 665
13 3300005844 Ga0068862_100019113 Ga0068862_1000191132 667
14 3300028380 Ga0268265_10011323 Ga0268265_100113232 667
15 3300028800 Ga0265338_10116448 Ga0265338_101164481 668
16 3300005435 Ga0070714_100050567 Ga0070714_1000505673 669
17 3300005577 Ga0068857_100071625 Ga0068857_1000716253 669
18 3300025929 Ga0207664_10006175 Ga0207664_100061759 669
19 3300005355 Ga0070671_100021627 Ga0070671_1000216274 671
20 3300005614 Ga0068856_100000037 Ga0068856_100000037111 671
21 3300005614 Ga0068856_100026360 Ga0068856_1000263604 671
22 3300006038 Ga0075365_10008426 Ga0075365_100084264 671
23 3300025931 Ga0207644_10041880 Ga0207644_100418802 671
24 3300025949 Ga0207667_10095763 Ga0207667_100957633 671
25 3300026078 Ga0207702_10000001 Ga0207702_10000001536 671
26 3300037418 Ga0395900_0003182 Ga0395900_0003182_9107_11125 671
27 3300037466 Ga0395898_0002981 Ga0395898_0002981_5488_7506 671
28 3300049568 Ga0501031_0000319 Ga0501031_0000319_2784_4799 671
29 3300049569 Ga0501032_0000624 Ga0501032_0000624_22389_24404 671
30 3300049572 Ga0501036_0027821 Ga0501036_0027821_195_2210 671
31 3300049573 Ga0501037_0000031 Ga0501037_0000031_94964_96979 671
32 3300049579 Ga0501043_0000366 Ga0501043_0000366_28970_30985 671
33 3300049580 Ga0501046_0000819 Ga0501046_0000819_13768_15783 671
34 3300049581 Ga0501047_0000032 Ga0501047_0000032_53444_55459 671
35 3300049582 Ga0501048_0000013 Ga0501048_0000013_61031_63046 671
36 3300049822 Ga0501035_0002961 Ga0501035_0002961_8961_10976 671
37 3300049823 Ga0501044_0005076 Ga0501044_0005076_4465_6480 671
38 3300053092 Ga0500583_0000277 Ga0500583_0000277_7581_9596 671
39 3300053096 Ga0500641_0000001 Ga0500641_0000001_27942_29957 671
40 3300053098 Ga0500650_0015591 Ga0500650_0015591_908_2923 671
41 3300053131 Ga0500652_000001 Ga0500652_000001_332516_334531 671
42 3300005327 Ga0070658_10001614 Ga0070658_1000161429 672
43 3300005327 Ga0070658_10063582 Ga0070658_100635821 672
44 3300005331 Ga0070670_100044889 Ga0070670_1000448894 672
45 3300005367 Ga0070667_100000683 Ga0070667_10000068320 672
46 3300005530 Ga0070679_100038755 Ga0070679_1000387553 672
47 3300005563 Ga0068855_100006896 Ga0068855_1000068966 672
48 3300006038 Ga0075365_10000009 Ga0075365_1000000946 672
49 3300006048 Ga0075363_100030485 Ga0075363_1000304851 672
50 3300006177 Ga0075362_10004927 Ga0075362_100049272 672
51 3300006186 Ga0075369_10000010 Ga0075369_1000001038 672
52 3300006195 Ga0075366_10000001 Ga0075366_10000001593 672
53 3300013296 Ga0157374_10002315 Ga0157374_1000231513 672
54 3300013296 Ga0157374_10005056 Ga0157374_100050566 672
55 3300014325 Ga0163163_10012258 Ga0163163_100122582 672
56 3300025909 Ga0207705_10002124 Ga0207705_100021243 672
57 3300025921 Ga0207652_10045561 Ga0207652_100455612 672
58 3300025949 Ga0207667_10007092 Ga0207667_100070927 672
59 3300025986 Ga0207658_10041522 Ga0207658_100415222 672
60 3300046557 Ga0495622_0000191 Ga0495622_0000191_44570_46603 672
61 3300046674 Ga0495588_0000432 Ga0495588_0000432_19564_21591 672
62 3300046694 Ga0495649_0002766 Ga0495649_0002766_5404_7425 672
63 3300050489 nmdc:mga03683_569_c1 nmdc:mga03683_569_c1_3676_5703 672
64 3300050490 nmdc:mga03n38_27475_c1 nmdc:mga03n38_27475_c1_91_2130 672
65 3300050492 nmdc:mga0yw44_1496_c1 nmdc:mga0yw44_1496_c1_5587_7608 672
66 3300050492 nmdc:mga0yw44_2_c1 nmdc:mga0yw44_2_c1_59087_61114 672
67 3300053087 Ga0500643_000022 Ga0500643_000022_103735_105753 672
68 3300053093 Ga0500651_0000001 Ga0500651_0000001_379013_381031 672
69 3300053118 Ga0500594_0000018 Ga0500594_0000018_45930_47948 672
70 3300053123 Ga0500614_000001 Ga0500614_000001_461760_463787 672
71 3300053722 Ga0500649_000004 Ga0500649_000004_130157_132184 672
72 3300009094 Ga0111539_10001451 Ga0111539_100014516 673
73 3300010375 Ga0105239_10000301 Ga0105239_1000030147 673
74 3300026078 Ga0207702_10000057 Ga0207702_1000005735 673
75 3300037418 Ga0395900_0000001 Ga0395900_0000001_309811_311847 673
76 3300037466 Ga0395898_0000002 Ga0395898_0000002_794159_796195 673
77 3300038443 Ga0395901_0000006 Ga0395901_0000006_439835_441871 673
78 3300053079 Ga0500610_0000006 Ga0500610_0000006_37996_40023 673
79 3300053088 Ga0500644_0000557 Ga0500644_0000557_3003_5030 673
80 3300053103 Ga0500555_000002 Ga0500555_000002_730445_732472 673
81 3300053131 Ga0500652_000022 Ga0500652_000022_72065_74092 673
82 3300005355 Ga0070671_100000001 Ga0070671_100000001663 674
83 3300005535 Ga0070684_100000330 Ga0070684_10000033034 674
84 3300005544 Ga0070686_100005004 Ga0070686_1000050041 674
85 3300006038 Ga0075365_10001235 Ga0075365_1000123511 674
86 3300006051 Ga0075364_10000247 Ga0075364_100002472 674
87 3300006186 Ga0075369_10000001 Ga0075369_1000000134 674
88 3300006844 Ga0075428_100039756 Ga0075428_1000397564 674
89 3300006846 Ga0075430_100029773 Ga0075430_1000297735 674
90 3300009551 Ga0105238_10112226 Ga0105238_101122262 674
91 3300009553 Ga0105249_10002278 Ga0105249_100022782 674
92 3300013105 Ga0157369_10084555 Ga0157369_100845552 674
93 3300013307 Ga0157372_10110250 Ga0157372_101102502 674
94 3300014325 Ga0163163_10010347 Ga0163163_1001034712 674
95 3300025931 Ga0207644_10000001 Ga0207644_10000001773 674
96 3300025944 Ga0207661_10001032 Ga0207661_1000103217 674
97 3300025961 Ga0207712_10001823 Ga0207712_100018233 674
98 3300027866 Ga0209813_10000001 Ga0209813_10000001250 674
99 3300050491 nmdc:mga00v17_172_c1 nmdc:mga00v17_172_c1_23440_25467 674
100 3300050491 nmdc:mga00v17_25263_c1 nmdc:mga00v17_25263_c1_1404_3434 674
101 3300050492 nmdc:mga0yw44_346_c1 nmdc:mga0yw44_346_c1_6784_8811 674
102 3300050493 nmdc:mga0k408_923_c1 nmdc:mga0k408_923_c1_12752_14782 674
103 3300050494 nmdc:mga06z11_15_c1 nmdc:mga06z11_15_c1_37065_39095 674
104 3300050495 nmdc:mga04h51_1_c1 nmdc:mga04h51_1_c1_227350_229380 674
105 3300050496 nmdc:mga07m45_28540_c1 nmdc:mga07m45_28540_c1_202_2244 674
106 3300050509 nmdc:mga0qj67_24475_c1 nmdc:mga0qj67_24475_c1_372_2399 674
107 3300050516 nmdc:mga0sz30_1_c1 nmdc:mga0sz30_1_c1_48721_50751 674
108 3300053092 Ga0500583_0000082 Ga0500583_0000082_51518_53548 674
109 3300053103 Ga0500555_000001 Ga0500555_000001_549264_551303 674
110 3300053108 Ga0500562_000002 Ga0500562_000002_757316_759346 674
111 3300053147 Ga0500589_000013 Ga0500589_000013_92558_94588 674
112 3300053727 Ga0500611_000309 Ga0500611_000309_1666_3696 674
113 3300001990 JGI24737J22298_10000025 JGI24737J22298_1000002536 675
114 3300002067 JGI24735J21928_10000075 JGI24735J21928_1000007517 675
115 3300005329 Ga0070683_100003499 Ga0070683_1000034994 675
116 3300005614 Ga0068856_100000445 Ga0068856_10000044528 675
117 3300006195 Ga0075366_10000039 Ga0075366_1000003914 675
118 3300006195 Ga0075366_10000933 Ga0075366_1000093312 675
119 3300009093 Ga0105240_10057456 Ga0105240_100574564 675
120 3300013100 Ga0157373_10000061 Ga0157373_1000006128 675
121 3300025944 Ga0207661_10001500 Ga0207661_100015004 675
122 3300026078 Ga0207702_10030001 Ga0207702_100300013 675
123 3300050493 nmdc:mga0k408_13_c1 nmdc:mga0k408_13_c1_4042_6078 675
124 3300050493 nmdc:mga0k408_8239_c1 nmdc:mga0k408_8239_c1_3348_5390 675
125 3300053137 Ga0500561_0000001 Ga0500561_0000001_739174_741201 675

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12826

HHH_2

Helix-hairpin-helix motif

521

584

0.98

PF00533

BRCT

BRCA1 C Terminus (BRCT) domain

599

676

0.97

PF03120

DNA_ligase_OB

NAD-dependent DNA ligase OB-fold domain

331

409

0.97

PF01653

DNA_ligase_aden

NAD-dependent DNA ligase adenylation domain

74

328

0.96

PF14520

HHH_5

Helix-hairpin-helix domain

523

575

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1x2i-assembly1.cif.gz_B crystal structure of archaeal xpf/mus81 homolog, hef from pyrococcus furiosus, helix-hairpin-helix domain 0.9236 517 576
1z00-assembly1.cif.gz_A solution structure of the c-terminal domain of ercc1 complexed with the c-terminal domain of xpf 0.9207 525 576
1x2i-assembly1.cif.gz_A crystal structure of archaeal xpf/mus81 homolog, hef from pyrococcus furiosus, helix-hairpin-helix domain 0.9035 525 576
3bac-assembly1.cif.gz_A-2 structural basis for the inhibition of bacterial nad+ dependent dna ligase 0.868 73 324
3bac-assembly1.cif.gz_A-2 structural basis for the inhibition of bacterial nad+ dependent dna ligase 0.8454 73 324
ID Description Score Start End Superfamily
af_Q93456_191_254_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9773 525 575 1.10.150.20
4ucvA01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9763 9 65 1.10.287.610
3uq8A01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9702 8 65 1.10.287.610
af_P15042_317_390_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9685 327 398 2.40.50.140
4lh7A01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9591 1 65 1.10.287.610
ID Description Score Start End GO Terms
AF-A0A2R6EC66-F1-model_v4 DNA ligase (NAD(+)) LigA (EC 6.5.1.2) 0.9665 479 593 GO:0003677
GO:0003911
GO:0006281
AF-A0A381GIS6-F1-model_v4 deleted 0.957 441 595
AF-A0A358DGW3-F1-model_v4 DNA ligase (NAD(+)) LigA 0.9529 427 569 GO:0006281
GO:0016874
AF-A0A3M1AIY6-F1-model_v4 NAD-dependent DNA ligase LigA 0.9518 423 551 GO:0003677
GO:0003911
GO:0006260
GO:0006281
AF-A0A2T2UG48-F1-model_v4 Helix-hairpin-helix DNA-binding motif class 1 domain-containing protein 0.9489 480 587 GO:0003677
GO:0006281
GO:0051537

Feature Viewer

pLDDT pTM Quality
78.97 0.54 Medium
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Predicted Structure (AlphaFold2)

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