F124124

General Info

Members Datasets Scaffolds Average Seq Length
124 89 123 435

Family's Representative Sequence

Representative Sequence 3300049580|Ga0501046_0006198|Ga0501046_0006198_2187_3587
Length 466
Sequence VTALRPVRIDPTMKKRRSASALSSHLGSFVAARPALSRRQFLRGAGILLSLPLLDSMISPFACARESSDATSAGAKPRRMLAICNNLGLVPDQFFPKQTGRGYELSPYLRALEAHRDDFTVFSGVSHPDVDGGHPADICFLTAAPHPGSGGFRNTISLDQYIGERIGHLTRFPSLTLGVNVAQGARSLSWTGSGVLIPCEEKASDVFKRLFIQGTPAEVNAQMRRLDLGQSILDAVAGQAKDLQRSVTARDRDRLDQYFTSVRDLEQRMKMSKEWERKPKPVVHVPVPLDPASPREYMDKVKLMYDMAKLAFETDSTRSISLMLDSVNSPAIEFGDVKTSDGYHNLSHHGKSEAKLSQLHAIDEWHMKLLANLFTDLKGVQEDGESLFDRTMVLYGSNLGNANTHVTTNLPTLFAGGGFRHGQHLAFDTNRNYPLPNLFVSMLQRMGIESDKFASSTGTMRGLDIA

Samples

Sample ID Description Type Environment
1 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
19 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
20 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
24 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
51 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
53 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
54 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
55 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
56 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
57 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
58 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
59 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
60 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
61 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
62 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
63 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
64 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
65 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
66 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
67 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
68 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
69 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
70 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
71 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
72 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
73 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
74 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
75 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
76 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
77 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
78 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
82 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
84 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
85 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
86 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
87 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
88 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
89 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.19
Metatranscriptomes 0
Isolates 0.81

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.61
Nodule 0
Rhizoplane 0
Rhizosphere 97.58
Stem 0
Stem Tuber 0
Unclassified 0.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10128330 3300005327 Bacteria 2112
2 Ga0068868_100208408 3300005338 Bacteria 1633
3 Ga0070689_100003102 3300005340 Bacteria 10968
4 Ga0070689_100016892 3300005340 Bacteria 5348
5 Ga0070675_100225207 3300005354 Bacteria 1634
6 Ga0070688_100011696 3300005365 Unclassified 4888
7 Ga0070667_100038800 3300005367 Bacteria 3993
8 Ga0070705_100015437 3300005440 Bacteria 3950
9 Ga0070700_100166868 3300005441 Bacteria 1521
10 Ga0070694_100007068 3300005444 Bacteria 6831
11 Ga0070707_100001137 3300005468 Bacteria 26188
12 Ga0070686_100060158 3300005544 Unclassified 2450
13 Ga0070665_100157274 3300005548 Unclassified 2275
14 Ga0068855_100007158 3300005563 Bacteria 13540
15 Ga0068857_100001346 3300005577 Bacteria 19334
16 Ga0068857_100001880 3300005577 Bacteria 16908
17 Ga0068859_100074946 3300005617 Unclassified 3424
18 Ga0068859_100224475 3300005617 Unclassified 1967
19 Ga0068863_100066036 3300005841 Unclassified 3423
20 Ga0068858_100110147 3300005842 Bacteria 2571
21 Ga0081455_10007382 3300005937 Bacteria 11586
22 Ga0075367_10041707 3300006178 Bacteria 2684
23 Ga0068871_100094035 3300006358 Unclassified 2502
24 Ga0075428_100014442 3300006844 Bacteria 8772
25 Ga0075428_100151920 3300006844 Unclassified 2515
26 Ga0075430_100088885 3300006846 Bacteria 2585
27 Ga0075431_100146234 3300006847 Unclassified 2435
28 Ga0075431_100184059 3300006847 Unclassified 2143
29 Ga0075429_100001529 3300006880 Bacteria 19006
30 Ga0097620_100074946 3300006931 Unclassified 3424
31 Ga0097620_100224479 3300006931 Unclassified 1967
32 Ga0105240_10000234 3300009093 Bacteria 110280
33 Ga0105240_10001562 3300009093 Bacteria 38837
34 Ga0105240_10161087 3300009093 Bacteria 2665
35 Ga0111539_10020062 3300009094 Bacteria 8235
36 Ga0111539_10033536 3300009094 Bacteria 6233
37 Ga0111539_10073736 3300009094 Bacteria 4023
38 Ga0111539_10213483 3300009094 Bacteria 2248
39 Ga0111539_10500530 3300009094 Bacteria 1415
40 Ga0105245_10043321 3300009098 Bacteria 4014
41 Ga0114129_10011143 3300009147 Bacteria 12815
42 Ga0105237_10081362 3300009545 Bacteria 3229
43 Ga0105238_10000948 3300009551 Bacteria 29702
44 Ga0105238_10199170 3300009551 Unclassified 1978
45 Ga0105239_10008994 3300010375 Bacteria 11303
46 Ga0157369_10070490 3300013105 Bacteria 3755
47 Ga0157374_10105011 3300013296 Unclassified 2712
48 Ga0157374_10163706 3300013296 Bacteria 2167
49 Ga0157375_10084366 3300013308 Bacteria 3225
50 Ga0163163_10001109 3300014325 Bacteria 22873
51 Ga0163163_10057389 3300014325 Bacteria 3849
52 Ga0163163_10140575 3300014325 Bacteria 2457
53 Ga0163163_10160407 3300014325 Bacteria 2294
54 Ga0207695_10000336 3300025913 Bacteria 110791
55 Ga0207695_10099773 3300025913 Unclassified 2900
56 Ga0207695_10235787 3300025913 Unclassified 1732
57 Ga0207671_10089425 3300025914 Bacteria 2318
58 Ga0207646_10052304 3300025922 Bacteria 3655
59 Ga0207694_10003461 3300025924 Bacteria 12542
60 Ga0207670_10001287 3300025936 Bacteria 13251
61 Ga0207667_10014479 3300025949 Bacteria 8989
62 Ga0207712_10274510 3300025961 Bacteria 1373
63 Ga0207658_10007287 3300025986 Bacteria 7543
64 Ga0207703_10090109 3300026035 Bacteria 2577
65 Ga0207639_10000021 3300026041 Bacteria 233661
66 Ga0207708_10113504 3300026075 Bacteria 2105
67 Ga0207674_10000440 3300026116 Bacteria 53812
68 Ga0207674_10008252 3300026116 Bacteria 12058
69 Ga0207428_10026071 3300027907 Bacteria 4883
70 Ga0268266_10127120 3300028379 Unclassified 2276
71 Ga0265338_10011773 3300028800 Bacteria 10058
72 Ga0265338_10014892 3300028800 Bacteria 8601
73 Ga0265338_10087592 3300028800 Bacteria 2586
74 Ga0265332_10005585 3300031238 Bacteria 5787
75 Ga0265320_10007813 3300031240 Bacteria 6606
76 Ga0265325_10002743 3300031241 Bacteria 11767
77 Ga0265339_10006889 3300031249 Bacteria 7406
78 Ga0265331_10000372 3300031250 Bacteria 46716
79 Ga0265327_10009199 3300031251 Bacteria 7168
80 Ga0265313_10002725 3300031595 Bacteria 14934
81 Ga0265314_10000683 3300031711 Bacteria 41295
82 Ga0265314_10016517 3300031711 Bacteria 5824
83 Ga0265314_10067847 3300031711 Bacteria 2400
84 Ga0265342_10028169 3300031712 Bacteria 3502
85 Ga0373947_0094948 3300035725 Unclassified 1866
86 Ga0373937_0030612 3300036401 Bacteria 4874
87 Ga0373925_0266897 3300037068 Bacteria 1376
88 Ga0451576_0029008 3300045051 Bacteria 5924
89 Ga0451576_0087991 3300045051 Unclassified 3231
90 Ga0451576_0169575 3300045051 Bacteria 2278
91 Ga0495592_0155071 3300046454 Bacteria 1581
92 Ga0495641_0008354 3300046461 Bacteria 6329
93 Ga0495630_0001851 3300046517 Bacteria 14776
94 Ga0495630_0076347 3300046517 Bacteria 2525
95 Ga0495630_0130131 3300046517 Bacteria 1911
96 Ga0495643_0000091 3300046522 Bacteria 152803
97 Ga0495666_0007617 3300046526 Bacteria 5418
98 Ga0495666_0040470 3300046526 Unclassified 2260
99 Ga0495666_0050724 3300046526 Unclassified 1994
100 Ga0495586_0001157 3300046535 Bacteria 14759
101 Ga0495586_0004924 3300046535 Bacteria 7143
102 Ga0495621_0024296 3300046539 Bacteria 2024
103 Ga0495599_0010191 3300046678 Bacteria 5752
104 Ga0495658_0001105 3300046683 Bacteria 14269
105 Ga0495613_0022808 3300046689 Unclassified 4664
106 Ga0495674_0003896 3300047319 Bacteria 14488
107 Ga0495676_0008872 3300047321 Bacteria 9184
108 Ga0495676_0034730 3300047321 Unclassified 4226
109 Ga0501034_0109831 3300049571 Bacteria 2749
110 Ga0501046_0006198 3300049580 Bacteria 10618
111 Ga0501047_0004858 3300049581 Bacteria 12626
112 Ga0501083_0053001 3300049744 Unclassified 2724
113 Ga0501035_0031593 3300049822 Bacteria 4822
114 Ga0501044_0153287 3300049823 Bacteria 2286
115 nmdc:mga05p37_3606_c1 3300050507 Bacteria 18088
116 nmdc:mga09592_11412_c1 3300050508 Bacteria 7225
117 nmdc:mga0qj67_56558_c1 3300050509 Bacteria 3109
118 nmdc:mga0qj67_74931_c1 3300050509 Bacteria 2704
119 nmdc:mga06r32_20038_c1 3300050510 Bacteria 6149
120 nmdc:mga08y16_12440_c1 3300050511 Bacteria 8952
121 nmdc:mga08y16_166122_c1 3300050511 Bacteria 2292
122 nmdc:mga08y16_184001_c1 3300050511 Bacteria 2168
123 Ga0500616_0006208 3300053153 Bacteria 7884

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009094 Ga0111539_10500530 Ga0111539_105005301 387
2 3300046526 Ga0495666_0050724 Ga0495666_0050724_761_1924 387
3 3300026041 Ga0207639_10000021 Ga0207639_10000021140 392
4 3300005548 Ga0070665_100157274 Ga0070665_1001572741 399
5 3300028379 Ga0268266_10127120 Ga0268266_101271201 399
6 3300013296 Ga0157374_10163706 Ga0157374_101637061 401
7 3300006178 Ga0075367_10041707 Ga0075367_100417071 406
8 3300036401 Ga0373937_0030612 Ga0373937_0030612_3434_4666 410
9 3300046517 Ga0495630_0001851 Ga0495630_0001851_8465_9703 410
10 3300046526 Ga0495666_0007617 Ga0495666_0007617_3720_4958 410
11 3300046535 Ga0495586_0001157 Ga0495586_0001157_5046_6284 410
12 3300047319 Ga0495674_0003896 Ga0495674_0003896_5058_6296 410
13 3300047321 Ga0495676_0008872 Ga0495676_0008872_2922_4160 410
14 3300045051 Ga0451576_0029008 Ga0451576_0029008_3212_4453 411
15 iso_pu_bacteria 2684623219 2687237607 413
16 3300028800 Ga0265338_10014892 Ga0265338_100148925 414
17 3300031238 Ga0265332_10005585 Ga0265332_100055855 414
18 3300031241 Ga0265325_10002743 Ga0265325_100027437 414
19 3300031249 Ga0265339_10006889 Ga0265339_100068897 414
20 3300031250 Ga0265331_10000372 Ga0265331_1000037212 414
21 3300031595 Ga0265313_10002725 Ga0265313_100027253 414
22 3300031711 Ga0265314_10000683 Ga0265314_100006838 414
23 3300031712 Ga0265342_10028169 Ga0265342_100281693 414
24 3300037068 Ga0373925_0266897 Ga0373925_0266897_19_1281 414
25 3300046683 Ga0495658_0001105 Ga0495658_0001105_10843_12105 414
26 3300049571 Ga0501034_0109831 Ga0501034_0109831_50_1303 414
27 3300006844 Ga0075428_100014442 Ga0075428_1000144424 416
28 3300049823 Ga0501044_0153287 Ga0501044_0153287_942_2204 417
29 3300009094 Ga0111539_10073736 Ga0111539_100737362 419
30 3300046522 Ga0495643_0000091 Ga0495643_0000091_2342_3670 419
31 3300053153 Ga0500616_0006208 Ga0500616_0006208_2547_3821 419
32 3300009551 Ga0105238_10000948 Ga0105238_1000094816 420
33 3300025924 Ga0207694_10003461 Ga0207694_1000346110 420
34 3300050509 nmdc:mga0qj67_56558_c1 nmdc:mga0qj67_56558_c1_590_1900 420
35 3300013296 Ga0157374_10105011 Ga0157374_101050112 422
36 3300046454 Ga0495592_0155071 Ga0495592_0155071_133_1401 422
37 3300006846 Ga0075430_100088885 Ga0075430_1000888852 423
38 3300006880 Ga0075429_100001529 Ga0075429_10000152910 423
39 3300009147 Ga0114129_10011143 Ga0114129_100111433 423
40 3300050507 nmdc:mga05p37_3606_c1 nmdc:mga05p37_3606_c1_8599_9906 423
41 3300050508 nmdc:mga09592_11412_c1 nmdc:mga09592_11412_c1_681_1988 423
42 3300050509 nmdc:mga0qj67_74931_c1 nmdc:mga0qj67_74931_c1_928_2235 423
43 3300005841 Ga0068863_100066036 Ga0068863_1000660362 424
44 3300031711 Ga0265314_10016517 Ga0265314_100165174 425
45 3300031251 Ga0265327_10009199 Ga0265327_100091992 431
46 3300049744 Ga0501083_0053001 Ga0501083_0053001_1188_2483 431
47 3300005440 Ga0070705_100015437 Ga0070705_1000154373 433
48 3300005444 Ga0070694_100007068 Ga0070694_1000070684 433
49 3300005842 Ga0068858_100110147 Ga0068858_1001101472 433
50 3300009545 Ga0105237_10081362 Ga0105237_100813622 433
51 3300025913 Ga0207695_10235787 Ga0207695_102357872 433
52 3300025914 Ga0207671_10089425 Ga0207671_100894252 433
53 3300026035 Ga0207703_10090109 Ga0207703_100901091 433
54 3300005577 Ga0068857_100001880 Ga0068857_1000018806 435
55 3300010375 Ga0105239_10008994 Ga0105239_100089944 435
56 3300026116 Ga0207674_10000440 Ga0207674_1000044033 435
57 3300005563 Ga0068855_100007158 Ga0068855_1000071585 436
58 3300005937 Ga0081455_10007382 Ga0081455_100073824 436
59 3300006844 Ga0075428_100151920 Ga0075428_1001519201 436
60 3300009094 Ga0111539_10020062 Ga0111539_100200624 436
61 3300027907 Ga0207428_10026071 Ga0207428_100260714 436
62 3300046678 Ga0495599_0010191 Ga0495599_0010191_4144_5499 436
63 3300050511 nmdc:mga08y16_166122_c1 nmdc:mga08y16_166122_c1_527_1882 436
64 3300025913 Ga0207695_10099773 Ga0207695_100997732 437
65 3300025961 Ga0207712_10274510 Ga0207712_102745101 437
66 3300005468 Ga0070707_100001137 Ga0070707_10000113721 438
67 3300009094 Ga0111539_10213483 Ga0111539_102134832 438
68 3300025922 Ga0207646_10052304 Ga0207646_100523041 438
69 3300025949 Ga0207667_10014479 Ga0207667_100144794 439
70 3300006358 Ga0068871_100094035 Ga0068871_1000940352 441
71 3300009098 Ga0105245_10043321 Ga0105245_100433212 441
72 3300028800 Ga0265338_10087592 Ga0265338_100875922 441
73 3300031711 Ga0265314_10067847 Ga0265314_100678472 441
74 3300046517 Ga0495630_0076347 Ga0495630_0076347_604_1929 441
75 3300005340 Ga0070689_100016892 Ga0070689_1000168922 442
76 3300005365 Ga0070688_100011696 Ga0070688_1000116963 442
77 3300005367 Ga0070667_100038800 Ga0070667_1000388002 442
78 3300025986 Ga0207658_10007287 Ga0207658_100072876 442
79 3300028800 Ga0265338_10011773 Ga0265338_100117739 442
80 3300031240 Ga0265320_10007813 Ga0265320_100078132 442
81 3300035725 Ga0373947_0094948 Ga0373947_0094948_85_1413 442
82 3300045051 Ga0451576_0169575 Ga0451576_0169575_271_1605 442
83 3300046517 Ga0495630_0130131 Ga0495630_0130131_32_1360 442
84 3300046526 Ga0495666_0040470 Ga0495666_0040470_786_2114 442
85 3300050511 nmdc:mga08y16_184001_c1 nmdc:mga08y16_184001_c1_215_1546 442
86 3300009093 Ga0105240_10000234 Ga0105240_1000023419 443
87 3300025913 Ga0207695_10000336 Ga0207695_1000033669 443
88 3300005340 Ga0070689_100003102 Ga0070689_1000031025 444
89 3300005441 Ga0070700_100166868 Ga0070700_1001668681 444
90 3300005617 Ga0068859_100224475 Ga0068859_1002244752 444
91 3300006931 Ga0097620_100224479 Ga0097620_1002244791 444
92 3300009093 Ga0105240_10001562 Ga0105240_1000156239 444
93 3300025936 Ga0207670_10001287 Ga0207670_100012876 444
94 3300026075 Ga0207708_10113504 Ga0207708_101135042 444
95 3300005338 Ga0068868_100208408 Ga0068868_1002084081 445
96 3300005354 Ga0070675_100225207 Ga0070675_1002252071 445
97 3300005577 Ga0068857_100001346 Ga0068857_1000013462 445
98 3300005617 Ga0068859_100074946 Ga0068859_1000749461 445
99 3300006847 Ga0075431_100146234 Ga0075431_1001462342 445
100 3300006847 Ga0075431_100184059 Ga0075431_1001840592 445
101 3300006931 Ga0097620_100074946 Ga0097620_1000749461 445
102 3300009093 Ga0105240_10161087 Ga0105240_101610872 445
103 3300009094 Ga0111539_10033536 Ga0111539_100335363 445
104 3300009551 Ga0105238_10199170 Ga0105238_101991702 445
105 3300013308 Ga0157375_10084366 Ga0157375_100843662 445
106 3300014325 Ga0163163_10001109 Ga0163163_100011092 445
107 3300014325 Ga0163163_10057389 Ga0163163_100573892 445
108 3300014325 Ga0163163_10140575 Ga0163163_101405752 445
109 3300014325 Ga0163163_10160407 Ga0163163_101604072 445
110 3300026116 Ga0207674_10008252 Ga0207674_100082522 445
111 3300045051 Ga0451576_0087991 Ga0451576_0087991_231_1586 445
112 3300046461 Ga0495641_0008354 Ga0495641_0008354_600_1955 445
113 3300046535 Ga0495586_0004924 Ga0495586_0004924_3369_4724 445
114 3300046539 Ga0495621_0024296 Ga0495621_0024296_34_1383 445
115 3300046689 Ga0495613_0022808 Ga0495613_0022808_1484_2839 445
116 3300047321 Ga0495676_0034730 Ga0495676_0034730_1868_3223 445
117 3300049580 Ga0501046_0006198 Ga0501046_0006198_2187_3587 445
118 3300049581 Ga0501047_0004858 Ga0501047_0004858_7393_8793 445
119 3300049822 Ga0501035_0031593 Ga0501035_0031593_504_1904 445
120 3300050510 nmdc:mga06r32_20038_c1 nmdc:mga06r32_20038_c1_4558_5913 445
121 3300050511 nmdc:mga08y16_12440_c1 nmdc:mga08y16_12440_c1_3196_4539 445
122 3300005544 Ga0070686_100060158 Ga0070686_1000601582 447
123 3300005327 Ga0070658_10128330 Ga0070658_101283301 448
124 3300013105 Ga0157369_10070490 Ga0157369_100704902 448

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07586

HXXSHH

Protein of unknown function (DUF1552)

79

371

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
5eiu-assembly1.cif.gz_D mini trim5 b-box 2 dimer c2 crystal form 0.8959 200 259
4afl-assembly2.cif.gz_B the crystal structure of the ing4 dimerization domain reveals the functional organization of the ing family of chromatin binding proteins. 0.8912 199 259
2lm9-assembly1.cif.gz_A the nmr structure of a major allergen from dust mite 0.8347 185 259
3fx7-assembly1.cif.gz_B crystal structure of hypothetical protein of hp0062 from helicobacter pylori 0.8074 196 259
6hk5-assembly1.cif.gz_G x-ray structure of a truncated mutant of the metallochaperone cooj with a high-affinity nickel-binding site 0.807 196 256
ID Description Score Start End Superfamily
4b08A06 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;B family DNA polymerase, finger domain 0.9026 208 249 1.10.287.690
1setB01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Serine-tRNA synthetase, tRNA binding domain 0.8991 200 259 1.10.287.40
3fd9B03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;ESAT-6-like 0.8898 199 259 1.10.287.1060
3stqC00 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.8898 205 256 1.10.287.2500
4aflF00 Special;Helix non-globular;Helix Hairpins; 0.8855 204 259 6.10.140.1740
ID Description Score Start End GO Terms
AF-A0A355GB79-F1-model_v4 DUF1552 domain-containing protein 0.9775 270 446
AF-A0A5C6M5V2-F1-model_v4 DUF1552 domain-containing protein 0.9752 326 444
AF-A0A6P2DIC1-F1-model_v4 Uncharacterized protein 0.97 326 398
AF-A0A2D5SAE3-F1-model_v4 DUF1552 domain-containing protein 0.9696 286 445
AF-A0A2D7V386-F1-model_v4 DUF1552 domain-containing protein 0.9688 321 446

Feature Viewer

pLDDT pTM Quality
82.12 0.79 High
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Predicted Structure (AlphaFold2)

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