F124070

General Info

Members Datasets Scaffolds Average Seq Length
124 101 118 323

Family's Representative Sequence

Representative Sequence 3300049571|Ga0501034_0209177|Ga0501034_0209177_493_1539
Length 348
Sequence MSFFMHISLLQNPQAIGHNHAVPYLHDWRPALSRTLPHLKLGTGPTPVRRLPGLESDGGEVWLKDESGFGDGGWGGNKVRKLEWLLPDVRRRNRKSILTFGGLGTNWGLATALYGRDQGIHTALGLIDQPRDEHVEAQLERLEASGATLHFTHTKNRTIALAPWLILRHSSGLRPPYILPSGGSSPLGSLGYVETAFEIAAQVEAGALPAPAHVVVPTGSGGTAAGLALGFGLAGLPTRVTGVIVTEHLRLDDRAIGRLAGKSAALLRERGAEFPEPALNFEMTDRWLGETYGEPTPESRQATEQARPEGLELDPVYTAKAMAALLAKSTAGDFTAGPVLFINTNGPR

Samples

Sample ID Description Type Environment
1 2643221692 Nocardia sp. Root136 Isolate Unclassified
2 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
3 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
4 2928142448 Prescottella equi DPS 2018 Isolate Unclassified
5 2984592036 Aeromicrobium sp. SORGH_AS981 Isolate Aerial Root
6 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
7 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
17 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
18 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
22 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
23 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
24 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
28 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
29 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
30 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
31 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
32 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
33 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
34 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
50 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
51 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
52 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
53 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
54 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
55 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
56 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
57 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
58 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
59 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
60 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
61 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
62 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
63 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
64 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
65 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
66 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
67 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
68 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
69 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
70 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
71 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
72 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
73 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
74 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
75 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
76 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
77 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
78 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
79 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
80 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
81 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
82 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
83 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
84 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
85 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
86 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
87 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
90 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
91 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
92 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
94 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
95 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
96 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
97 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
98 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
99 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
100 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
101 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.16
Metatranscriptomes 0
Isolates 4.84

Biome Distribution

Category Percentage (%)
Aerial Root 0.81
Bulb 0
Endosphere 8.87
Nodule 0
Rhizoplane 18.55
Rhizosphere 66.13
Stem 0
Stem Tuber 0
Unclassified 5.65

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070677_10000011 3300005333 Bacteria 60102
2 Ga0070682_100000028 3300005337 Bacteria 185177
3 Ga0068868_100006373 3300005338 Bacteria 8346
4 Ga0070700_100038950 3300005441 Bacteria 2900
5 Ga0070678_100002057 3300005456 Bacteria 10900
6 Ga0070662_100000039 3300005457 Bacteria 74491
7 Ga0068853_100069443 3300005539 Bacteria 3065
8 Ga0070693_100000193 3300005547 Bacteria 28441
9 Ga0070665_100000068 3300005548 Bacteria 204531
10 Ga0068854_100006449 3300005578 Bacteria 7463
11 Ga0070702_100018183 3300005615 Bacteria 3641
12 Ga0068866_10026537 3300005718 Bacteria 2737
13 Ga0068858_100000012 3300005842 Bacteria 216931
14 Ga0081539_10000504 3300005985 Bacteria 81870
15 Ga0075365_10054167 3300006038 Bacteria 2659
16 Ga0075365_10066266 3300006038 Bacteria 2422
17 Ga0075363_100068858 3300006048 Bacteria 1919
18 Ga0075364_10024145 3300006051 Unclassified 3857
19 Ga0075364_10126928 3300006051 Bacteria 1711
20 Ga0075370_10009834 3300006353 Bacteria 4984
21 Ga0075430_100047146 3300006846 Bacteria 3638
22 Ga0105245_10000161 3300009098 Bacteria 63378
23 Ga0105245_10009998 3300009098 Bacteria 8261
24 Ga0105247_10000105 3300009101 Bacteria 87578
25 Ga0105242_10001190 3300009176 Bacteria 20519
26 Ga0105242_10003454 3300009176 Bacteria 12286
27 Ga0105249_10000165 3300009553 Bacteria 77694
28 Ga0157374_10005660 3300013296 Bacteria 10536
29 Ga0157378_10011406 3300013297 Bacteria 7780
30 Ga0157380_10000028 3300014326 Bacteria 99836
31 Ga0157380_10000097 3300014326 Bacteria 48365
32 Ga0157379_10134341 3300014968 Bacteria 2228
33 Ga0207682_10000159 3300025893 Bacteria 30618
34 Ga0207642_10004735 3300025899 Bacteria 4392
35 Ga0207710_10009817 3300025900 Bacteria 4023
36 Ga0207687_10000026 3300025927 Bacteria 173968
37 Ga0207687_10000578 3300025927 Bacteria 24764
38 Ga0207687_10001606 3300025927 Bacteria 15571
39 Ga0207706_10000026 3300025933 Bacteria 149379
40 Ga0207686_10000032 3300025934 Bacteria 150341
41 Ga0207712_10000037 3300025961 Bacteria 195906
42 Ga0207640_10005017 3300025981 Bacteria 7197
43 Ga0207658_10335135 3300025986 Bacteria 1313
44 Ga0207677_10029981 3300026023 Bacteria 3465
45 Ga0207703_10000091 3300026035 Bacteria 105608
46 Ga0207639_10171869 3300026041 Bacteria 1836
47 Ga0207675_100086951 3300026118 Bacteria 2935
48 Ga0207683_10105692 3300026121 Bacteria 2517
49 Ga0268266_10000020 3300028379 Bacteria 527065
50 Ga0316574_0133667 3300035398 Bacteria 1597
51 Ga0373937_0008136 3300036401 Bacteria 9105
52 Ga0466972_0027954 3300044658 Bacteria 2787
53 Ga0466963_0079917 3300044694 Bacteria 2213
54 Ga0466970_0017093 3300044765 Bacteria 3745
55 Ga0466957_0049945 3300044842 Bacteria 2544
56 Ga0466959_0387424 3300045049 Bacteria 951
57 Ga0466958_0067844 3300045836 Bacteria 2179
58 Ga0466967_0098228 3300045976 Bacteria 2673
59 Ga0495629_0008074 3300046459 Bacteria 7750
60 Ga0495629_0235755 3300046459 Bacteria 1260
61 Ga0495641_0000003 3300046461 Bacteria 242879
62 Ga0495639_0082681 3300046475 Bacteria 1497
63 Ga0495608_0030672 3300046511 Bacteria 3639
64 Ga0495620_0000477 3300046515 Bacteria 26080
65 Ga0495628_0100409 3300046516 Bacteria 2234
66 Ga0495630_0095870 3300046517 Bacteria 2243
67 Ga0495634_0152360 3300046642 Bacteria 1462
68 Ga0495599_0004170 3300046678 Bacteria 8532
69 Ga0495647_0000015 3300046681 Bacteria 86790
70 Ga0495669_0000130 3300046684 Bacteria 48500
71 Ga0495624_0000030 3300046690 Bacteria 91755
72 Ga0495649_0005165 3300046694 Bacteria 8369
73 Ga0495676_0000283 3300047321 Bacteria 40939
74 Ga0495676_0005012 3300047321 Bacteria 12147
75 Ga0495680_0000352 3300047322 Bacteria 51468
76 Ga0496100_0000007 3300048903 Bacteria 261266
77 Ga0496100_0000049 3300048903 Bacteria 75590
78 Ga0496101_0000010 3300048904 Bacteria 281990
79 Ga0496101_0000013 3300048904 Bacteria 261266
80 Ga0496102_0000546 3300048905 Bacteria 40572
81 Ga0496103_0000368 3300048906 Bacteria 40572
82 Ga0496104_0000002 3300048907 Bacteria 686017
83 Ga0496104_0000013 3300048907 Bacteria 397163
84 Ga0496105_0000001 3300048908 Bacteria 1328178
85 Ga0496105_0000006 3300048908 Bacteria 393578
86 Ga0496106_0000006 3300048909 Bacteria 251855
87 Ga0496106_0000018 3300048909 Bacteria 175028
88 Ga0496106_0000049 3300048909 Bacteria 97550
89 Ga0496107_0000007 3300048910 Bacteria 257113
90 Ga0496107_0000032 3300048910 Bacteria 99848
91 Ga0496108_0000001 3300048911 Bacteria 919044
92 Ga0496108_0221534 3300048911 Bacteria 1644
93 Ga0496108_0228773 3300048911 Bacteria 1617
94 Ga0496109_0000006 3300048912 Bacteria 325513
95 Ga0496110_0016895 3300048913 Bacteria 6099
96 Ga0496110_0044727 3300048913 Bacteria 3868
97 Ga0496111_0114970 3300048914 Bacteria 1983
98 Ga0496114_0043691 3300048917 Bacteria 3716
99 Ga0496119_0038596 3300048922 Bacteria 3083
100 Ga0496125_0071231 3300048928 Bacteria 2717
101 Ga0501034_0006628 3300049571 Bacteria 12428
102 Ga0501034_0209177 3300049571 Bacteria 1907
103 Ga0501034_0309335 3300049571 Bacteria 1515
104 Ga0501034_0359338 3300049571 Bacteria 1384
105 Ga0501034_0414661 3300049571 Bacteria 1268
106 Ga0501070_0132307 3300049586 Bacteria 2060
107 Ga0501075_0001287 3300049591 Bacteria 16261
108 Ga0501081_0114801 3300049743 Bacteria 1914
109 Ga0501044_0116947 3300049823 Bacteria 2671
110 Ga0501045_0116812 3300049824 Bacteria 1980
111 nmdc:mga00v17_326754_c1 3300050491 Bacteria 996
112 nmdc:mga0yw44_85900_c1 3300050492 Bacteria 1981
113 nmdc:mga07m45_38625_c1 3300050496 Bacteria 2664
114 nmdc:mga0qj67_31783_c1 3300050509 Bacteria 4113
115 Ga0495601_0000260 3300053077 Bacteria 28505
116 Ga0495655_0000004 3300053083 Bacteria 293683
117 Ga0500614_000306 3300053123 Bacteria 12673
118 Ga0500628_000049 3300053129 Bacteria 41425

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300045049 Ga0466959_0387424 Ga0466959_0387424_17_904 275
2 3300050491 nmdc:mga00v17_326754_c1 nmdc:mga00v17_326754_c1_98_955 282
3 3300049571 Ga0501034_0006628 Ga0501034_0006628_11424_12320 292
4 3300049571 Ga0501034_0309335 Ga0501034_0309335_579_1475 292
5 3300049823 Ga0501044_0116947 Ga0501044_0116947_321_1217 292
6 3300025986 Ga0207658_10335135 Ga0207658_103351352 293
7 3300046516 Ga0495628_0100409 Ga0495628_0100409_1086_1973 295
8 3300048913 Ga0496110_0044727 Ga0496110_0044727_1302_2189 295
9 3300048914 Ga0496111_0114970 Ga0496111_0114970_1011_1898 295
10 3300005441 Ga0070700_100038950 Ga0070700_1000389502 298
11 3300044658 Ga0466972_0027954 Ga0466972_0027954_393_1370 300
12 3300044694 Ga0466963_0079917 Ga0466963_0079917_214_1191 300
13 3300044765 Ga0466970_0017093 Ga0466970_0017093_1862_2839 300
14 3300044842 Ga0466957_0049945 Ga0466957_0049945_997_1974 300
15 3300045976 Ga0466967_0098228 Ga0466967_0098228_102_1079 300
16 3300048905 Ga0496102_0000546 Ga0496102_0000546_31280_32200 306
17 3300048906 Ga0496103_0000368 Ga0496103_0000368_8373_9293 306
18 3300006353 Ga0075370_10009834 Ga0075370_100098344 310
19 3300049571 Ga0501034_0359338 Ga0501034_0359338_155_1105 310
20 3300049824 Ga0501045_0116812 Ga0501045_0116812_685_1632 310
21 iso_pu_bacteria 2984592036 2984592067 311
22 3300006051 Ga0075364_10126928 Ga0075364_101269282 313
23 3300046678 Ga0495599_0004170 Ga0495599_0004170_6447_7424 313
24 3300049571 Ga0501034_0414661 Ga0501034_0414661_162_1142 313
25 3300005615 Ga0070702_100018183 Ga0070702_1000181834 314
26 3300045836 Ga0466958_0067844 Ga0466958_0067844_461_1438 315
27 3300006038 Ga0075365_10066266 Ga0075365_100662663 316
28 3300005456 Ga0070678_100002057 Ga0070678_10000205715 317
29 3300006051 Ga0075364_10024145 Ga0075364_100241454 317
30 3300026121 Ga0207683_10105692 Ga0207683_101056923 317
31 iso_pu_bacteria 2643221697 2644538755 317
32 3300006038 Ga0075365_10054167 Ga0075365_100541674 318
33 3300046517 Ga0495630_0095870 Ga0495630_0095870_426_1403 318
34 3300046642 Ga0495634_0152360 Ga0495634_0152360_30_1007 318
35 3300050492 nmdc:mga0yw44_85900_c1 nmdc:mga0yw44_85900_c1_757_1737 318
36 3300009098 Ga0105245_10000161 Ga0105245_1000016129 321
37 3300047322 Ga0495680_0000352 Ga0495680_0000352_49147_50112 321
38 3300048911 Ga0496108_0221534 Ga0496108_0221534_166_1152 321
39 3300048913 Ga0496110_0016895 Ga0496110_0016895_576_1562 321
40 3300048917 Ga0496114_0043691 Ga0496114_0043691_790_1776 321
41 3300048911 Ga0496108_0228773 Ga0496108_0228773_381_1403 322
42 3300049571 Ga0501034_0209177 Ga0501034_0209177_493_1539 322
43 3300049586 Ga0501070_0132307 Ga0501070_0132307_727_1719 322
44 iso_pu_bacteria 2643221692 2644515634 322
45 3300035398 Ga0316574_0133667 Ga0316574_0133667_326_1327 323
46 3300006048 Ga0075363_100068858 Ga0075363_1000688582 324
47 3300006846 Ga0075430_100047146 Ga0075430_1000471464 324
48 3300036401 Ga0373937_0008136 Ga0373937_0008136_4351_5325 324
49 3300046511 Ga0495608_0030672 Ga0495608_0030672_106_1116 324
50 3300050509 nmdc:mga0qj67_31783_c1 nmdc:mga0qj67_31783_c1_2202_3176 324
51 3300005333 Ga0070677_10000011 Ga0070677_1000001121 325
52 3300005337 Ga0070682_100000028 Ga0070682_100000028128 325
53 3300005338 Ga0068868_100006373 Ga0068868_1000063738 325
54 3300005457 Ga0070662_100000039 Ga0070662_10000003963 325
55 3300005539 Ga0068853_100069443 Ga0068853_1000694432 325
56 3300005547 Ga0070693_100000193 Ga0070693_10000019314 325
57 3300005548 Ga0070665_100000068 Ga0070665_100000068142 325
58 3300005578 Ga0068854_100006449 Ga0068854_1000064496 325
59 3300005718 Ga0068866_10026537 Ga0068866_100265373 325
60 3300005842 Ga0068858_100000012 Ga0068858_100000012106 325
61 3300005985 Ga0081539_10000504 Ga0081539_1000050429 325
62 3300009098 Ga0105245_10009998 Ga0105245_100099987 325
63 3300009101 Ga0105247_10000105 Ga0105247_1000010518 325
64 3300009176 Ga0105242_10001190 Ga0105242_100011904 325
65 3300009176 Ga0105242_10003454 Ga0105242_1000345414 325
66 3300009553 Ga0105249_10000165 Ga0105249_1000016574 325
67 3300013296 Ga0157374_10005660 Ga0157374_100056603 325
68 3300013297 Ga0157378_10011406 Ga0157378_100114069 325
69 3300014326 Ga0157380_10000028 Ga0157380_1000002852 325
70 3300014326 Ga0157380_10000097 Ga0157380_1000009739 325
71 3300014968 Ga0157379_10134341 Ga0157379_101343411 325
72 3300025893 Ga0207682_10000159 Ga0207682_1000015912 325
73 3300025899 Ga0207642_10004735 Ga0207642_100047355 325
74 3300025900 Ga0207710_10009817 Ga0207710_100098172 325
75 3300025927 Ga0207687_10000026 Ga0207687_1000002691 325
76 3300025927 Ga0207687_10000578 Ga0207687_100005785 325
77 3300025927 Ga0207687_10001606 Ga0207687_100016063 325
78 3300025933 Ga0207706_10000026 Ga0207706_1000002617 325
79 3300025934 Ga0207686_10000032 Ga0207686_1000003276 325
80 3300025961 Ga0207712_10000037 Ga0207712_1000003714 325
81 3300025981 Ga0207640_10005017 Ga0207640_100050176 325
82 3300026023 Ga0207677_10029981 Ga0207677_100299813 325
83 3300026035 Ga0207703_10000091 Ga0207703_1000009175 325
84 3300026041 Ga0207639_10171869 Ga0207639_101718692 325
85 3300026118 Ga0207675_100086951 Ga0207675_1000869513 325
86 3300028379 Ga0268266_10000020 Ga0268266_10000020262 325
87 3300046459 Ga0495629_0008074 Ga0495629_0008074_5018_6022 325
88 3300046459 Ga0495629_0235755 Ga0495629_0235755_148_1158 325
89 3300046461 Ga0495641_0000003 Ga0495641_0000003_17386_18399 325
90 3300046475 Ga0495639_0082681 Ga0495639_0082681_190_1167 325
91 3300046515 Ga0495620_0000477 Ga0495620_0000477_16933_17910 325
92 3300046681 Ga0495647_0000015 Ga0495647_0000015_83745_84734 325
93 3300046684 Ga0495669_0000130 Ga0495669_0000130_19456_20436 325
94 3300046690 Ga0495624_0000030 Ga0495624_0000030_20537_21514 325
95 3300046694 Ga0495649_0005165 Ga0495649_0005165_6124_7101 325
96 3300047321 Ga0495676_0000283 Ga0495676_0000283_2345_3322 325
97 3300047321 Ga0495676_0005012 Ga0495676_0005012_2152_3132 325
98 3300048903 Ga0496100_0000007 Ga0496100_0000007_82665_83642 325
99 3300048903 Ga0496100_0000049 Ga0496100_0000049_30642_31622 325
100 3300048904 Ga0496101_0000010 Ga0496101_0000010_68938_69918 325
101 3300048904 Ga0496101_0000013 Ga0496101_0000013_82665_83642 325
102 3300048907 Ga0496104_0000002 Ga0496104_0000002_566180_567157 325
103 3300048907 Ga0496104_0000013 Ga0496104_0000013_217364_218341 325
104 3300048908 Ga0496105_0000001 Ga0496105_0000001_761022_761999 325
105 3300048908 Ga0496105_0000006 Ga0496105_0000006_178823_179800 325
106 3300048909 Ga0496106_0000006 Ga0496106_0000006_76804_77781 325
107 3300048909 Ga0496106_0000018 Ga0496106_0000018_3361_4341 325
108 3300048909 Ga0496106_0000049 Ga0496106_0000049_7275_8342 325
109 3300048910 Ga0496107_0000007 Ga0496107_0000007_76806_77783 325
110 3300048910 Ga0496107_0000032 Ga0496107_0000032_29979_30959 325
111 3300048911 Ga0496108_0000001 Ga0496108_0000001_274479_275456 325
112 3300048912 Ga0496109_0000006 Ga0496109_0000006_274479_275456 325
113 3300048922 Ga0496119_0038596 Ga0496119_0038596_1149_2126 325
114 3300048928 Ga0496125_0071231 Ga0496125_0071231_735_1712 325
115 3300049591 Ga0501075_0001287 Ga0501075_0001287_2171_3160 325
116 3300049743 Ga0501081_0114801 Ga0501081_0114801_313_1290 325
117 3300050496 nmdc:mga07m45_38625_c1 nmdc:mga07m45_38625_c1_753_1778 325
118 3300053077 Ga0495601_0000260 Ga0495601_0000260_11251_12228 325
119 3300053083 Ga0495655_0000004 Ga0495655_0000004_12064_13044 325
120 3300053123 Ga0500614_000306 Ga0500614_000306_3288_4301 325
121 3300053129 Ga0500628_000049 Ga0500628_000049_12004_12984 325
122 iso_pu_bacteria 2738543005 2739204635 325
123 iso_pu_bacteria 2928142448 2928145473 325
124 iso_pu_bacteria 2997600082 2997605289 325

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00291

PALP

Pyridoxal-phosphate dependent enzyme

39

345

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ysk-assembly1.cif.gz_B crystal structure of d-cysteine desulfhydrase from pectobacterium atrosepticum 0.8695 13 324
4d99-assembly1.cif.gz_B salmonella typhimurium d-cysteine desulfhydrase with l-ser bound non-covalently at the active site 0.8638 12 324
4d8u-assembly3.cif.gz_F crystal structure of d-cysteine desulfhydrase from salmonella typhimurium at 3.3 a in monoclinic space group with 8 subunits in the asymmetric unit 0.8613 16 324
4d92-assembly2.cif.gz_C salmonella typhimurium d-cysteine desulfhydrase soaked with beta-chloro-d-alanine shows pyruvate bound 4 a away from active site 0.8601 16 324
1tzk-assembly1.cif.gz_C crystal structure of 1-aminocyclopropane-1-carboxylate-deaminase complexed with alpha-keto-butyrate 0.857 14 323
ID Description Score Start End Superfamily
1tzkC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8642 161 323 3.40.50.1100
4d8uE01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8396 1 324 3.40.50.1100
1j0aA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8338 158 323 3.40.50.1100
4d8uD02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8289 54 155 3.40.50.1100
4d8uE01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8007 1 324 3.40.50.1100
ID Description Score Start End GO Terms
AF-A0A379BZG7-F1-model_v4 deleted 0.9808 147 325
AF-A0A523YUA9-F1-model_v4 Pyridoxal-phosphate dependent enzyme 0.9582 2 325 GO:0019148
AF-A0A3N0DIN1-F1-model_v4 Pyridoxal-phosphate dependent enzyme 0.9582 19 325 GO:0019148
AF-A0A4Q5TIC9-F1-model_v4 Pyridoxal-phosphate dependent enzyme 0.9561 2 325 GO:0019148
AF-A0A7Z7IN31-F1-model_v4 D-cysteine desulfhydrase (EC 4.4.1.15) 0.955 1 325 GO:0019148

Feature Viewer

pLDDT pTM Quality
94.19 0.92 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map