F123990

General Info

Members Datasets Scaffolds Average Seq Length
124 111 248 371

Family's Representative Sequence

Representative Sequence 3300048920|Ga0496117_0000048|Ga0496117_0000048_39988_41232
Length 414
Sequence LLRNELSVNGDFRHRLRGSAEHRRRWRVAPDVSDQSGRHATVVVVGAGQAGLSAAYHLQRRGFLSAPEHPDAERSFVVLDAAAAPGGAWQHRWKSLRMATVNGIFDLPGYPKPAIDDTEPSREAVPRYFADYERRFGFPILRPVTVTAVERLDDDPAGELVVDTSDGRWLTRHLINATGTWTNPVLPVYPGQETFLGRQLHTSDYRDAAEFAGHRVAVVGGGISAVQQLEEISRYAPTAWYTRREPVFLAGEFDHETIGRDTIAKVVADVEAGHRTGSVVSYTGLAWTPYALAARDRGVLVRRPMFTAIEPRGVREADGTFTSVDVILWATGFRAALGHLDPLRLKNAEGGIALRGTRVASDHRIHLIGFGPSQSTVGANRAGRDAVAEIARELSAAEAATAQTGVAQPADRMA

Samples

Sample ID Description Type Environment
1 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
11 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
12 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
13 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
14 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
15 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
16 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
17 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
18 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
19 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
28 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
29 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
30 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
31 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
32 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
33 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
34 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
35 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
36 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
37 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
38 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
39 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
40 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
41 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
42 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
43 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
44 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
45 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
46 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
47 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
48 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
49 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
50 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
51 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
52 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
53 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
54 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
55 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
57 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
58 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
59 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
60 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
61 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
62 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
63 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
64 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
65 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
66 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
67 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
68 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
69 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
70 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
71 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
72 2643221546 Microbacterium sp. Root53 Isolate Unclassified
73 2643221597 Microbacterium sp. Root180 Isolate Unclassified
74 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
75 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
76 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
77 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
78 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
79 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
80 2773857759 Microbacterium sp. 1294 Isolate Unclassified
81 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
82 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
83 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
84 2808606394 Promicromonospora sp. C35 Isolate Unclassified
85 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
86 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
87 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
88 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
89 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
90 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
91 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
92 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
93 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
94 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
95 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
96 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
97 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
98 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
99 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
100 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
101 2932398195 Dietzia sp. 2505 Isolate Rhizosphere
102 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
103 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
104 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
105 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
106 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
107 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
108 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
109 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
110 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere
111 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 65.32
Metatranscriptomes 0.81
Isolates 33.87

Biome Distribution

Category Percentage (%)
Aerial Root 0.81
Bulb 0
Endosphere 12.1
Nodule 0
Rhizoplane 7.26
Rhizosphere 42.74
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496117_0000048 3300048920 Bacteria 295908
2 rootH2_10033327 3300003320 Bacteria 5137
3 rootL2_10262596 3300003322 Bacteria 4821
4 rootH1_10030759 3300003323 Bacteria 6164
5 Ga0006562J51391_1036431 3300003578 Bacteria 3270
6 Ga0070658_10070293 3300005327 Bacteria 2865
7 Ga0070683_100028751 3300005329 Bacteria 5026
8 Ga0070682_100165306 3300005337 Bacteria 1532
9 Ga0070681_10046720 3300005458 Bacteria 4327
10 Ga0068852_100110132 3300005616 Bacteria 2502
11 Ga0075365_10031058 3300006038 Bacteria 3425
12 Ga0075368_10033009 3300006042 Bacteria 2013
13 Ga0075364_10016698 3300006051 Bacteria 4571
14 Ga0075364_10053543 3300006051 Bacteria 2638
15 Ga0075367_10007116 3300006178 Bacteria 5707
16 Ga0075370_10022184 3300006353 Bacteria 3484
17 Ga0157369_10077352 3300013105 Bacteria 3566
18 Ga0157369_10197234 3300013105 Bacteria 2113
19 Ga0171462_1003 3300013250 Bacteria 853796
20 Ga0163162_10238654 3300013306 Bacteria 1948
21 Ga0207705_10018077 3300025909 Bacteria 5041
22 Ga0207707_10045757 3300025912 Bacteria 3813
23 Ga0207660_10027654 3300025917 Bacteria 3873
24 Ga0207652_10019317 3300025921 Bacteria 5604
25 Ga0207690_10205739 3300025932 Bacteria 1498
26 Ga0207665_10139111 3300025939 Bacteria 1729
27 Ga0207683_10042097 3300026121 Bacteria 3989
28 Ga0207698_10098022 3300026142 Bacteria 2421
29 Ga0307405_10007239 3300031731 Bacteria 5530
30 Ga0307406_10004339 3300031901 Bacteria 7717
31 Ga0307406_10009211 3300031901 Bacteria 5531
32 Ga0307409_100243442 3300031995 Bacteria 1639
33 Ga0307416_100163408 3300032002 Bacteria 2062
34 Ga0307415_100038325 3300032126 Bacteria 3158
35 Ga0395898_0150872 3300037466 Bacteria 2224
36 Ga0466967_0393877 3300045976 Bacteria 1347
37 Ga0495627_007453 3300046453 Bacteria 4189
38 Ga0495645_0034062 3300046543 Bacteria 3717
39 Ga0496100_0037161 3300048903 Bacteria 3076
40 Ga0496102_0242014 3300048905 Bacteria 1701
41 Ga0496103_0074565 3300048906 Bacteria 2127
42 Ga0496104_0027481 3300048907 Bacteria 5265
43 Ga0496105_0117391 3300048908 Bacteria 2194
44 Ga0496112_0044711 3300048915 Bacteria 4340
45 Ga0496114_0064829 3300048917 Bacteria 3060
46 Ga0496114_0237133 3300048917 Bacteria 1603
47 Ga0496115_0312960 3300048918 Bacteria 1285
48 Ga0496116_0019093 3300048919 Bacteria 5260
49 Ga0496117_0010060 3300048920 Bacteria 8689
50 Ga0496118_0012954 3300048921 Bacteria 7940
51 Ga0496119_0000341 3300048922 Bacteria 65282
52 Ga0496119_0001842 3300048922 Bacteria 24511
53 Ga0496119_0001905 3300048922 Bacteria 23905
54 Ga0496119_0003986 3300048922 Bacteria 14945
55 Ga0496120_0002458 3300048923 Bacteria 18672
56 Ga0496122_0000030 3300048925 Bacteria 331586
57 Ga0496122_0000120 3300048925 Bacteria 182539
58 Ga0496122_0008022 3300048925 Bacteria 11527
59 Ga0496123_0000024 3300048926 Bacteria 331587
60 Ga0496123_0000051 3300048926 Bacteria 237095
61 Ga0496124_0002437 3300048927 Bacteria 24376
62 Ga0496124_0099065 3300048927 Bacteria 2364
63 Ga0496125_0000802 3300048928 Bacteria 51278
64 Ga0496126_0020782 3300048929 Bacteria 6426
65 Ga0496126_0112093 3300048929 Bacteria 2375
66 Ga0501036_0006110 3300049572 Bacteria 9776
67 Ga0501038_0029267 3300049574 Bacteria 4883
68 Ga0501043_0005736 3300049579 Bacteria 10002
69 Ga0501048_0002833 3300049582 Bacteria 13241
70 Ga0501070_0001627 3300049586 Bacteria 19926
71 Ga0501074_0003258 3300049590 Bacteria 11469
72 Ga0501044_0102885 3300049823 Bacteria 2871
73 nmdc:mga0yw44_9368_c1 3300050492 Bacteria 4946
74 nmdc:mga06z11_65590_c1 3300050494 Bacteria 1906
75 nmdc:mga04h51_11980_c1 3300050495 Bacteria 2422
76 nmdc:mga07m45_105555_c1 3300050496 Bacteria 1620
77 Ga0495619_0023714 3300053085 Bacteria 3934
78 Ga0500650_0005495 3300053098 Bacteria 4730
79 Ga0500559_0000475 3300053136 Bacteria 28528
80 Ga0500573_0000744 3300053140 Bacteria 14555
81 Ga0500577_0001908 3300053142 Bacteria 5345
82 Ga0500616_0000040 3300053153 Bacteria 367604
83 2515853901 2515154155 Bacteria 7985436
84 2588108233 2585428157 Bacteria 3018951
85 2643753518 2643221546 Bacteria 2910897
86 2643995635 2643221597 Bacteria 3347721
87 2738695343 2738541272 Bacteria 6848551
88 2739327798 2738543027 Bacteria 6409078
89 2739606320 2739367654 Bacteria 6049412
90 2758227349 2757320536 Bacteria 3629334
91 2760306872 2758568522 Bacteria 5953541
92 2760624619 2758568621 Bacteria 5967089
93 2774383204 2773857759 Bacteria 2963774
94 2774399801 2773857763 Bacteria 4180068
95 2808629530 2808606306 Bacteria 3608896
96 2808883496 2808606368 Bacteria 3174172
97 2809029547 2808606394 Bacteria 6248540
98 2821269736 2821268502 Bacteria 3750023
99 2852680020 2852677369 Bacteria 3768884
100 2857479247 2857479173 Bacteria 2469263
101 2857633516 2857632687 Bacteria 2448521
102 2857723055 2857720070 Bacteria 3189373
103 2870628725 2870628048 Bacteria 3696012
104 2870802930 2870801768 Bacteria 2710986
105 2870804997 2870804320 Bacteria 2552467
106 2904432933 2904430863 Bacteria 3486923
107 2904503385 2904501621 Bacteria 3401437
108 2908675438 2908674828 Bacteria 3382763
109 2909074493 2909074476 Bacteria 3436050
110 2919041495 2919039151 Bacteria 3391018
111 2919443260 2919443155 Bacteria 4072969
112 2928092545 2928090899 Bacteria 3158267
113 2928500423 2928500415 Bacteria 3384541
114 2932398405 2932398195 Bacteria 3847976
115 2946026796 2946024296 Bacteria 3508095
116 2977253382 2977251589 Bacteria 2952848
117 2984583921 2984580707 Bacteria 3351387
118 2990045109 2990044586 Bacteria 6603797
119 2995728640 2995726249 Bacteria 3470435
120 8002813359 8002811521 Bacteria 2942897
121 8016256401 8016254467 Bacteria 3797036
122 8045830914 8045830549 Bacteria 4444727
123 8056583543 8056579771 Bacteria 5840325
124 8057346088 8057345674 Bacteria 4160394
125 Ga0496117_0000048
126 rootH2_10033327
127 rootL2_10262596
128 rootH1_10030759
129 Ga0006562J51391_1036431
130 Ga0070658_10070293
131 Ga0070683_100028751
132 Ga0070682_100165306
133 Ga0070681_10046720
134 Ga0068852_100110132
135 Ga0075365_10031058
136 Ga0075368_10033009
137 Ga0075364_10016698
138 Ga0075364_10053543
139 Ga0075367_10007116
140 Ga0075370_10022184
141 Ga0157369_10077352
142 Ga0157369_10197234
143 Ga0171462_1003
144 Ga0163162_10238654
145 Ga0207705_10018077
146 Ga0207707_10045757
147 Ga0207660_10027654
148 Ga0207652_10019317
149 Ga0207690_10205739
150 Ga0207665_10139111
151 Ga0207683_10042097
152 Ga0207698_10098022
153 Ga0307405_10007239
154 Ga0307406_10004339
155 Ga0307406_10009211
156 Ga0307409_100243442
157 Ga0307416_100163408
158 Ga0307415_100038325
159 Ga0395898_0150872
160 Ga0466967_0393877
161 Ga0495627_007453
162 Ga0495645_0034062
163 Ga0496100_0037161
164 Ga0496102_0242014
165 Ga0496103_0074565
166 Ga0496104_0027481
167 Ga0496105_0117391
168 Ga0496112_0044711
169 Ga0496114_0064829
170 Ga0496114_0237133
171 Ga0496115_0312960
172 Ga0496116_0019093
173 Ga0496117_0010060
174 Ga0496118_0012954
175 Ga0496119_0000341
176 Ga0496119_0001842
177 Ga0496119_0001905
178 Ga0496119_0003986
179 Ga0496120_0002458
180 Ga0496122_0000030
181 Ga0496122_0000120
182 Ga0496122_0008022
183 Ga0496123_0000024
184 Ga0496123_0000051
185 Ga0496124_0002437
186 Ga0496124_0099065
187 Ga0496125_0000802
188 Ga0496126_0020782
189 Ga0496126_0112093
190 Ga0501036_0006110
191 Ga0501038_0029267
192 Ga0501043_0005736
193 Ga0501048_0002833
194 Ga0501070_0001627
195 Ga0501074_0003258
196 Ga0501044_0102885
197 nmdc:mga0yw44_9368_c1
198 nmdc:mga06z11_65590_c1
199 nmdc:mga04h51_11980_c1
200 nmdc:mga07m45_105555_c1
201 Ga0495619_0023714
202 Ga0500650_0005495
203 Ga0500559_0000475
204 Ga0500573_0000744
205 Ga0500577_0001908
206 Ga0500616_0000040
207 2515853901
208 2588108233
209 2643753518
210 2643995635
211 2738695343
212 2739327798
213 2739606320
214 2758227349
215 2760306872
216 2760624619
217 2774383204
218 2774399801
219 2808629530
220 2808883496
221 2809029547
222 2821269736
223 2852680020
224 2857479247
225 2857633516
226 2857723055
227 2870628725
228 2870802930
229 2870804997
230 2904432933
231 2904503385
232 2908675438
233 2909074493
234 2919041495
235 2919443260
236 2928092545
237 2928500423
238 2932398405
239 2946026796
240 2977253382
241 2984583921
242 2990045109
243 2995728640
244 8002813359
245 8016256401
246 8045830914
247 8056583543
248 8057346088

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00743

FMO-like

Flavin-binding monooxygenase-like

141

257

0.89

PF13738

Pyr_redox_3

Pyridine nucleotide-disulphide oxidoreductase

43

252

0.83

PF13450

NAD_binding_8

NAD(P)-binding Rossmann-like domain

44

95

0.79

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

40

369

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
6vyp-assembly2.cif.gz_k crystal structure of the lsd1/corest histone demethylase bound to its nucleosome substrate 0.9544 2 38
7e0g-assembly1.cif.gz_A crystal structure of lysine specific demethylase 1 (lsd1) with tak-418, fad-adduct 0.9535 2 38
7xw8-assembly1.cif.gz_A crystal structure of lysine specific demethylase 1 (lsd1) with tak-418 distomer, fad-adduct 0.9533 2 38
2h94-assembly1.cif.gz_A crystal structure and mechanism of human lysine-specific demethylase-1 0.953 2 34
2x0l-assembly1.cif.gz_A crystal structure of a neuro-specific splicing variant of human histone lysine demethylase lsd1. 0.9478 2 38
ID Description Score Start End Superfamily
af_A0A1D6E7M3_47_537_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9691 2 34 3.50.50.60
1nvtB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.955 158 189 3.40.50.720
af_Q58484_104_277_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9477 157 189 3.40.50.720
af_Q2FZH1_2_136_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9477 2 32 3.40.50.720
3l9wA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9452 1 32 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A516RM70-F1-model_v4 NAD(P)/FAD-dependent oxidoreductase 0.9682 1 342 GO:0004497
GO:0050660
AF-A0A3M2MC70-F1-model_v4 NAD(P)/FAD-dependent oxidoreductase 0.9677 1 344 GO:0004497
GO:0050660
AF-A0A1H3NMH8-F1-model_v4 Flavin-binding monooxygenase-like 0.9677 132 340 GO:0004497
AF-A0A1G6IDV9-F1-model_v4 Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD 0.9675 1 340 GO:0004497
GO:0050660
AF-A0A0N1G2S1-F1-model_v4 deleted 0.967 56 344

Map