F123599

General Info

Members Datasets Scaffolds Average Seq Length
124 90 248 283

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0145678|Ga0453684_0145678_1224_2177
Length 317
Sequence VIVARLIAGGATNKANEFAADTANALKRVVRMIMATNYKEDLVGVLGYPVAENPTCVMQNAAFEALGLQWRYLTIEVKPAALPDAVRGLRALGFQGFNCTIPHKVAVMALLDEVSPDAALIGAVNTVRREGERLIGENTDGKGFLRGVREAGFEPRGKSIVVLGAGGAARAITVELALAGAANLIVVNRNVARGQALANHLNARTSAQARFVAWDKTYRVDDTIDVVVNATSIGLYPDVDATPDVDLSGVRSDVLVCDVIPNPPDTRLMQTARARGLKTLNGLSMLVYQGTLGFEMWTGQSAPEAVMKAALEQAFRA

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
15 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
16 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
17 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
18 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
19 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
20 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
22 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
23 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
24 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
25 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
26 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
27 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
28 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
29 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
44 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
45 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
46 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
47 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
48 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
49 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
50 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
51 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
52 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
53 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
54 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
55 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
56 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
57 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
58 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
59 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
60 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
61 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
62 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
63 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
64 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
65 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
66 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
67 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
68 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
69 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
70 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
71 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
72 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
73 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
74 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
75 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
76 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
77 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
78 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
79 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
80 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
81 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
82 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
83 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
84 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
85 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
87 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
88 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
89 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
90 2836160341 Unclassified Planctomycetes Bin 134 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.58
Metatranscriptomes 1.61
Isolates 0.81

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.61
Nodule 0
Rhizoplane 1.61
Rhizosphere 94.35
Stem 0
Stem Tuber 0
Unclassified 27.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0145678 3300044712 Unclassified 2822
2 Ga0070683_100028981 3300005329 Bacteria 5008
3 Ga0070689_100064845 3300005340 Bacteria 2844
4 Ga0070669_100367973 3300005353 Bacteria 1170
5 Ga0070667_100380610 3300005367 Bacteria 1282
6 Ga0070710_10076369 3300005437 Bacteria 1944
7 Ga0070711_100002579 3300005439 Bacteria 10375
8 Ga0070681_10094489 3300005458 Bacteria 2938
9 Ga0070699_100172374 3300005518 Bacteria 1918
10 Ga0070684_100323107 3300005535 Bacteria 1417
11 Ga0070697_100385431 3300005536 Bacteria 1214
12 Ga0070665_100018608 3300005548 Bacteria 6962
13 Ga0068859_100437952 3300005617 Unclassified 1403
14 Ga0068863_100080127 3300005841 Bacteria 3093
15 Ga0068860_100544632 3300005843 Bacteria 1162
16 Ga0075431_100362642 3300006847 Bacteria 1455
17 Ga0097620_100437958 3300006931 Unclassified 1403
18 Ga0105240_10300315 3300009093 Bacteria 1837
19 Ga0105247_10276272 3300009101 Bacteria 1157
20 Ga0114129_10466292 3300009147 Bacteria 1655
21 Ga0105248_10017148 3300009177 Bacteria 7978
22 Ga0105248_10395551 3300009177 Bacteria 1556
23 Ga0105237_10766914 3300009545 Bacteria 971
24 Ga0105238_10000370 3300009551 Bacteria 48257
25 Ga0105238_10540934 3300009551 Bacteria 1169
26 Ga0105238_10708640 3300009551 Bacteria 1019
27 Ga0105239_10178893 3300010375 Bacteria 2373
28 Ga0105239_10458419 3300010375 Unclassified 1447
29 Ga0105239_10507193 3300010375 Unclassified 1372
30 Ga0157369_10323309 3300013105 Unclassified 1603
31 Ga0157372_10684202 3300013307 Bacteria 1194
32 Ga0163163_10023536 3300014325 Bacteria 5847
33 Ga0157379_10129349 3300014968 Unclassified 2272
34 Ga0209051_1012985 3300025303 Bacteria 3990
35 Ga0207692_10123746 3300025898 Bacteria 1452
36 Ga0207680_10277373 3300025903 Unclassified 1164
37 Ga0207684_10070559 3300025910 Bacteria 2969
38 Ga0207707_10030521 3300025912 Bacteria 4715
39 Ga0207663_10007191 3300025916 Bacteria 5759
40 Ga0207652_10018802 3300025921 Bacteria 5672
41 Ga0207681_10337001 3300025923 Unclassified 1204
42 Ga0207694_10023310 3300025924 Bacteria 4698
43 Ga0207711_10128569 3300025941 Unclassified 2269
44 Ga0207711_10287620 3300025941 Bacteria 1515
45 Ga0207667_10170397 3300025949 Bacteria 2238
46 Ga0207658_10337539 3300025986 Bacteria 1309
47 Ga0207641_10067220 3300026088 Unclassified 3070
48 Ga0207683_10167941 3300026121 Bacteria 1986
49 Ga0265337_1000706 3300028556 Bacteria 17597
50 Ga0265337_1008637 3300028556 Bacteria 3687
51 Ga0265326_10002253 3300028558 Bacteria 6532
52 Ga0265334_10009934 3300028573 Unclassified 4024
53 Ga0265334_10032358 3300028573 Bacteria 2086
54 Ga0265323_10027968 3300028653 Bacteria 2116
55 Ga0265338_10006668 3300028800 Bacteria 14600
56 Ga0265338_10007152 3300028800 Bacteria 13974
57 Ga0265338_10012975 3300028800 Bacteria 9460
58 Ga0265338_10092251 3300028800 Bacteria 2498
59 Ga0265338_10133122 3300028800 Bacteria 1959
60 Ga0265338_10297282 3300028800 Unclassified 1175
61 Ga0265330_10002450 3300031235 Bacteria 10105
62 Ga0265332_10026556 3300031238 Bacteria 2540
63 Ga0265320_10079991 3300031240 Unclassified 1527
64 Ga0265325_10000732 3300031241 Bacteria 23758
65 Ga0265325_10002148 3300031241 Bacteria 13444
66 Ga0265325_10007764 3300031241 Bacteria 6390
67 Ga0265340_10000193 3300031247 Bacteria 30310
68 Ga0265340_10176726 3300031247 Unclassified 966
69 Ga0265339_10001288 3300031249 Bacteria 18753
70 Ga0265331_10000201 3300031250 Bacteria 72952
71 Ga0265331_10068294 3300031250 Unclassified 1666
72 Ga0265316_10000627 3300031344 Bacteria 39340
73 Ga0265316_10012540 3300031344 Bacteria 7593
74 Ga0265316_10121597 3300031344 Bacteria 1971
75 Ga0265313_10003368 3300031595 Bacteria 13015
76 Ga0316575_10007926 3300031665 Unclassified 3855
77 Ga0316579_10025917 3300031691 Bacteria 2650
78 Ga0316579_10056629 3300031691 Bacteria 1840
79 Ga0265314_10000155 3300031711 Bacteria 103216
80 Ga0265314_10000448 3300031711 Bacteria 55160
81 Ga0265314_10037946 3300031711 Bacteria 3486
82 Ga0265314_10055528 3300031711 Bacteria 2733
83 Ga0265314_10098005 3300031711 Unclassified 1892
84 Ga0265342_10000126 3300031712 Bacteria 84944
85 Ga0265342_10015363 3300031712 Bacteria 5039
86 Ga0316576_10017369 3300031727 Unclassified 4885
87 Ga0316576_10419986 3300031727 Unclassified 990
88 Ga0316576_10450498 3300031727 Unclassified 950
89 Ga0316578_10018862 3300031728 Bacteria 3789
90 Ga0316578_10121760 3300031728 Bacteria 1568
91 Ga0316577_10028165 3300031733 Bacteria 3134
92 Ga0316577_10191228 3300031733 Bacteria 1156
93 Ga0307412_10100723 3300031911 Bacteria 2043
94 Ga0316583_10019666 3300032133 Unclassified 2421
95 Ga0316583_10044535 3300032133 Unclassified 1568
96 Ga0316585_10001728 3300032137 Bacteria 5813
97 Ga0316580_10018371 3300032139 Unclassified 2150
98 Ga0316592_1004646 3300033524 Unclassified 2564
99 Ga0316596_1012135 3300033541 Unclassified 2115
100 Ga0373954_0014370 3300035118 Bacteria 3530
101 Ga0316574_0054714 3300035398 Unclassified 2492
102 Ga0316574_0072780 3300035398 Bacteria 2172
103 Ga0316582_0017947 3300036647 Unclassified 4106
104 Ga0316582_0093097 3300036647 Bacteria 1987
105 Ga0316582_0189298 3300036647 Unclassified 1401
106 Ga0316584_0024755 3300036712 Unclassified 4396
107 Ga0400483_037280 3300039062 Bacteria 2884
108 Ga0400489_00082 3300039093 Bacteria 8278
109 Ga0495592_0362214 3300046454 Unclassified 927
110 Ga0495651_0184136 3300046462 Unclassified 1476
111 Ga0495664_0192966 3300046477 Unclassified 1235
112 Ga0495664_0378284 3300046477 Bacteria 851
113 Ga0495643_0000062 3300046522 Bacteria 183602
114 Ga0495645_0014701 3300046543 Bacteria 5559
115 Ga0495634_0359278 3300046642 Bacteria 871
116 Ga0495686_0092186 3300047472 Bacteria 1838
117 Ga0496101_0686263 3300048904 Unclassified 809
118 Ga0496108_0128056 3300048911 Bacteria 2181
119 Ga0501031_0165885 3300049568 Bacteria 1444
120 Ga0501042_0267185 3300049578 Bacteria 1235
121 nmdc:mga0rr50_606498_c1 3300050513 Bacteria 933
122 Ga0500555_024833 3300053103 Bacteria 1715
123 Ga0501082_0000147 3300060353 Bacteria 58883
124 2836166377 2836160341 Unclassified 5867367
125 Ga0453684_0145678
126 Ga0070683_100028981
127 Ga0070689_100064845
128 Ga0070669_100367973
129 Ga0070667_100380610
130 Ga0070710_10076369
131 Ga0070711_100002579
132 Ga0070681_10094489
133 Ga0070699_100172374
134 Ga0070684_100323107
135 Ga0070697_100385431
136 Ga0070665_100018608
137 Ga0068859_100437952
138 Ga0068863_100080127
139 Ga0068860_100544632
140 Ga0075431_100362642
141 Ga0097620_100437958
142 Ga0105240_10300315
143 Ga0105247_10276272
144 Ga0114129_10466292
145 Ga0105248_10017148
146 Ga0105248_10395551
147 Ga0105237_10766914
148 Ga0105238_10000370
149 Ga0105238_10540934
150 Ga0105238_10708640
151 Ga0105239_10178893
152 Ga0105239_10458419
153 Ga0105239_10507193
154 Ga0157369_10323309
155 Ga0157372_10684202
156 Ga0163163_10023536
157 Ga0157379_10129349
158 Ga0209051_1012985
159 Ga0207692_10123746
160 Ga0207680_10277373
161 Ga0207684_10070559
162 Ga0207707_10030521
163 Ga0207663_10007191
164 Ga0207652_10018802
165 Ga0207681_10337001
166 Ga0207694_10023310
167 Ga0207711_10128569
168 Ga0207711_10287620
169 Ga0207667_10170397
170 Ga0207658_10337539
171 Ga0207641_10067220
172 Ga0207683_10167941
173 Ga0265337_1000706
174 Ga0265337_1008637
175 Ga0265326_10002253
176 Ga0265334_10009934
177 Ga0265334_10032358
178 Ga0265323_10027968
179 Ga0265338_10006668
180 Ga0265338_10007152
181 Ga0265338_10012975
182 Ga0265338_10092251
183 Ga0265338_10133122
184 Ga0265338_10297282
185 Ga0265330_10002450
186 Ga0265332_10026556
187 Ga0265320_10079991
188 Ga0265325_10000732
189 Ga0265325_10002148
190 Ga0265325_10007764
191 Ga0265340_10000193
192 Ga0265340_10176726
193 Ga0265339_10001288
194 Ga0265331_10000201
195 Ga0265331_10068294
196 Ga0265316_10000627
197 Ga0265316_10012540
198 Ga0265316_10121597
199 Ga0265313_10003368
200 Ga0316575_10007926
201 Ga0316579_10025917
202 Ga0316579_10056629
203 Ga0265314_10000155
204 Ga0265314_10000448
205 Ga0265314_10037946
206 Ga0265314_10055528
207 Ga0265314_10098005
208 Ga0265342_10000126
209 Ga0265342_10015363
210 Ga0316576_10017369
211 Ga0316576_10419986
212 Ga0316576_10450498
213 Ga0316578_10018862
214 Ga0316578_10121760
215 Ga0316577_10028165
216 Ga0316577_10191228
217 Ga0307412_10100723
218 Ga0316583_10019666
219 Ga0316583_10044535
220 Ga0316585_10001728
221 Ga0316580_10018371
222 Ga0316592_1004646
223 Ga0316596_1012135
224 Ga0373954_0014370
225 Ga0316574_0054714
226 Ga0316574_0072780
227 Ga0316582_0017947
228 Ga0316582_0093097
229 Ga0316582_0189298
230 Ga0316584_0024755
231 Ga0400483_037280
232 Ga0400489_00082
233 Ga0495592_0362214
234 Ga0495651_0184136
235 Ga0495664_0192966
236 Ga0495664_0378284
237 Ga0495643_0000062
238 Ga0495645_0014701
239 Ga0495634_0359278
240 Ga0495686_0092186
241 Ga0496101_0686263
242 Ga0496108_0128056
243 Ga0501031_0165885
244 Ga0501042_0267185
245 nmdc:mga0rr50_606498_c1
246 Ga0500555_024833
247 Ga0501082_0000147
248 2836166377

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08501

Shikimate_dh_N

Shikimate dehydrogenase substrate binding domain

45

127

0.99

PF18317

SDH_C

Shikimate 5'-dehydrogenase C-terminal domain

282

312

0.98

PF01488

Shikimate_DH

Shikimate / quinate 5-dehydrogenase

149

236

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
7cok-assembly1.cif.gz_B crystal structure of ligand-free form of 5-ketofructose reductase of gluconobacter sp. strain chm43 0.9832 7 281
7cok-assembly1.cif.gz_B crystal structure of ligand-free form of 5-ketofructose reductase of gluconobacter sp. strain chm43 0.9727 7 281
1nvt-assembly1.cif.gz_B crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with nadp+ 0.9294 9 282
3toz-assembly2.cif.gz_D 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from listeria monocytogenes in complex with nad. 0.9279 9 276
4k28-assembly1.cif.gz_A 2.15 angstrom resolution crystal structure of a shikimate dehydrogenase family protein from pseudomonas putida kt2440 in complex with nad+ 0.9271 10 265
ID Description Score Start End Superfamily
af_P0A6D5_3_112_3.40.50.10860 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Leucine Dehydrogenase, chain A, domain 1 0.9734 9 113 3.40.50.10860
af_P0A6D5_8_104_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9695 10 105 1.10.560.10
af_Q58484_1_94_3.40.50.10860 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Leucine Dehydrogenase, chain A, domain 1 0.9646 7 98 3.40.50.10860
af_P0A6D5_8_104_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.9502 10 105 1.10.560.10
5dzsB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Leucine Dehydrogenase, chain A, domain 1 0.9484 10 106 3.40.50.10860
ID Description Score Start End GO Terms
AF-A0A6C1QPR0-F1-model_v4 Shikimate dehydrogenase (NADP(+)) (SDH) (EC 1.1.1.25) 0.9915 7 282 GO:0004764
GO:0008652
GO:0009073
GO:0009423
GO:0019632
GO:0050661
AF-A0A7C7QX84-F1-model_v4 shikimate dehydrogenase (NADP(+)) (EC 1.1.1.25) 0.9795 15 284 GO:0004764
GO:0005829
GO:0009423
GO:0019632
GO:0050661
AF-X1DGV5-F1-model_v4 Shikimate dehydrogenase substrate binding N-terminal domain-containing protein 0.9767 14 106 GO:0004764
GO:0009423
GO:0019632
AF-A0A7V3H4F2-F1-model_v4 Shikimate dehydrogenase 0.9759 9 119 GO:0004764
GO:0005829
GO:0008652
GO:0009073
GO:0009423
GO:0019632
GO:0050661
AF-A0A7C7QX84-F1-model_v4 shikimate dehydrogenase (NADP(+)) (EC 1.1.1.25) 0.9759 15 284 GO:0004764
GO:0005829
GO:0009423
GO:0019632
GO:0050661

Map