F120357

General Info

Members Datasets Scaffolds Average Seq Length
123 87 246 274

Family's Representative Sequence

Representative Sequence 3300061734|Ga0530510_0154929|Ga0530510_0154929_233_1138
Length 301
Sequence VSVAGVIGLFRTKPRHPVSEDGRMALADHLRELRARFLGVTVFLVVGTTVAWFFYDQLFNLILDPYNDAREVLGESVNTEPYISGAAGPLLLRLKISALAAVVIGSPFWLYQIWAFIVPGLHPHEKHWTRLFAAVAGPLFVAGVAVGYYVLPKGLQVLLSFTPADVQSLLEFTEYFSFFTRMLLVFGVAFEIPLFVVLLNFAGVVSGAALAKHRPWIILGTFVFAAVATPSTDPFSMIMLAVPMVVLFFISEVVARTVDKRRARRASSGELAGLGDDEISPLTYDADPSDRRRTGLGREDD

Samples

Sample ID Description Type Environment
1 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
14 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
15 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
16 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
17 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
18 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
19 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
20 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
21 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
22 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
23 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
24 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
25 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
33 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
34 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
35 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
36 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
37 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
38 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
39 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
40 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
41 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
42 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
43 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
44 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
45 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
46 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
47 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
48 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
49 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
50 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
51 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
52 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
53 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
54 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
55 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
56 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
57 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
58 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
59 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
60 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
61 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
62 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
63 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
64 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
65 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
73 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
74 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
77 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
78 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
79 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
80 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
81 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
82 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
83 2643221641 Nocardioides sp. Root122 Isolate Unclassified
84 2739367898 Nocardioides sp. CF479 Isolate Unclassified
85 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
86 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
87 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 93.5
Metatranscriptomes 2.44
Isolates 4.07

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.88
Nodule 0.81
Rhizoplane 9.76
Rhizosphere 76.42
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0530510_0154929 3300061734 Bacteria 1693
2 rootH1_10012147 3300003316 Bacteria 2680
3 rootH1_10189613 3300003323 Bacteria 2051
4 Ga0058862_10125904 3300004803 Bacteria 1264
5 Ga0070658_10425072 3300005327 Bacteria 1143
6 Ga0070683_100113764 3300005329 Bacteria 2554
7 Ga0070683_100151489 3300005329 Bacteria 2199
8 Ga0070683_100189099 3300005329 Bacteria 1955
9 Ga0070680_100163291 3300005336 Bacteria 1872
10 Ga0070682_100046718 3300005337 Bacteria 2688
11 Ga0070660_100264054 3300005339 Bacteria 1406
12 Ga0070661_100335634 3300005344 Bacteria 1183
13 Ga0070714_100003571 3300005435 Bacteria 11632
14 Ga0070684_100067504 3300005535 Bacteria 3142
15 Ga0070684_100171124 3300005535 Bacteria 1973
16 Ga0068852_100107593 3300005616 Bacteria 2530
17 Ga0075365_10070588 3300006038 Bacteria 2350
18 Ga0075365_10102245 3300006038 Bacteria 1963
19 Ga0075367_10022536 3300006178 Bacteria 3534
20 Ga0075367_10191673 3300006178 Bacteria 1275
21 Ga0097621_100310583 3300006237 Bacteria 1395
22 Ga0105239_10019722 3300010375 Bacteria 7442
23 Ga0105239_10693471 3300010375 Bacteria 1164
24 Ga0157369_10510323 3300013105 Bacteria 1244
25 Ga0157372_10039208 3300013307 Bacteria 5229
26 Ga0157372_10395689 3300013307 Bacteria 1610
27 Ga0157372_10537509 3300013307 Bacteria 1362
28 Ga0182008_10057286 3300014497 Bacteria 1924
29 Ga0182008_10072452 3300014497 Bacteria 1695
30 Ga0157376_10739976 3300014969 Bacteria 992
31 Ga0206354_10919719 3300020081 Bacteria 1449
32 Ga0206353_12048550 3300020082 Bacteria 6413
33 Ga0209677_100764 3300025253 Bacteria 16304
34 Ga0207705_10102212 3300025909 Bacteria 2110
35 Ga0207649_10365150 3300025920 Bacteria 1072
36 Ga0207664_10026476 3300025929 Bacteria 4385
37 Ga0207706_10318922 3300025933 Bacteria 1353
38 Ga0207686_10142255 3300025934 Bacteria 1660
39 Ga0207679_10031426 3300025945 Bacteria 3716
40 Ga0207678_10007517 3300026067 Bacteria 9633
41 Ga0207678_10340692 3300026067 Bacteria 1292
42 Ga0307410_10500151 3300031852 Bacteria 1000
43 Ga0307409_100055048 3300031995 Bacteria 3069
44 Ga0395899_0006946 3300037312 Bacteria 8768
45 Ga0395900_0206350 3300037418 Bacteria 1986
46 Ga0395900_0627811 3300037418 Bacteria 1013
47 Ga0395898_0746172 3300037466 Bacteria 920
48 Ga0439465_0087758 3300041413 Bacteria 1061
49 Ga0451802_2177268 3300041460 Bacteria 1383
50 Ga0451837_0141013 3300041494 Bacteria 3095
51 Ga0451837_1663825 3300041494 Bacteria 2033
52 Ga0451853_0026300 3300041512 Bacteria 1262
53 Ga0451853_1198049 3300041512 Bacteria 5461
54 Ga0439431_0021785 3300041997 Bacteria 1540
55 Ga0439434_0002612 3300042435 Bacteria 5244
56 Ga0466972_0110737 3300044658 Bacteria 1297
57 Ga0466965_0064079 3300044683 Bacteria 1839
58 Ga0466961_0181314 3300044693 Bacteria 1307
59 Ga0466964_0016992 3300044706 Bacteria 2783
60 Ga0466964_0200329 3300044706 Bacteria 958
61 Ga0466964_0215898 3300044706 Bacteria 929
62 Ga0466968_0212698 3300044735 Bacteria 909
63 Ga0466970_0003563 3300044765 Bacteria 7586
64 Ga0466970_0109491 3300044765 Bacteria 1508
65 Ga0466970_0262296 3300044765 Bacteria 969
66 Ga0466957_0078408 3300044842 Bacteria 2054
67 Ga0466957_0087194 3300044842 Bacteria 1951
68 Ga0466957_0100390 3300044842 Bacteria 1824
69 Ga0466960_0006363 3300044901 Bacteria 4735
70 Ga0466960_0057517 3300044901 Bacteria 1896
71 Ga0466960_0136580 3300044901 Bacteria 1299
72 Ga0466960_0297986 3300044901 Bacteria 908
73 Ga0466959_0072453 3300045049 Bacteria 2493
74 Ga0466958_0030457 3300045836 Bacteria 3206
75 Ga0466967_0014732 3300045976 Bacteria 6106
76 Ga0466967_0117283 3300045976 Bacteria 2454
77 Ga0466967_0646891 3300045976 Bacteria 1045
78 Ga0495664_0203291 3300046477 Bacteria 1200
79 Ga0495657_0123604 3300046675 Bacteria 1628
80 Ga0495658_0198844 3300046683 Bacteria 1249
81 Ga0496101_0101193 3300048904 Bacteria 2157
82 Ga0496102_0114812 3300048905 Bacteria 2512
83 Ga0496104_0172722 3300048907 Bacteria 2072
84 Ga0496108_0208939 3300048911 Bacteria 1694
85 Ga0496108_0511912 3300048911 Bacteria 1048
86 Ga0496109_0021336 3300048912 Bacteria 5726
87 Ga0496110_0089259 3300048913 Bacteria 2755
88 Ga0496110_0136392 3300048913 Bacteria 2217
89 Ga0496112_0089103 3300048915 Bacteria 3053
90 Ga0496113_0013403 3300048916 Bacteria 5553
91 Ga0496113_0139587 3300048916 Bacteria 1906
92 Ga0501031_0080436 3300049568 Bacteria 2124
93 Ga0501031_0110165 3300049568 Bacteria 1798
94 Ga0501031_0150434 3300049568 Bacteria 1521
95 Ga0501036_0068798 3300049572 Bacteria 2996
96 Ga0501036_0316300 3300049572 Bacteria 1305
97 Ga0501036_0336910 3300049572 Bacteria 1260
98 Ga0501038_0210679 3300049574 Bacteria 1555
99 Ga0501039_0327346 3300049575 Bacteria 1204
100 Ga0501040_0171824 3300049576 Bacteria 1535
101 Ga0501040_0227011 3300049576 Bacteria 1329
102 Ga0501041_0253308 3300049577 Bacteria 1107
103 Ga0501042_0136724 3300049578 Bacteria 1767
104 Ga0501042_0199961 3300049578 Bacteria 1441
105 Ga0501067_0007549 3300049583 Bacteria 6046
106 Ga0501068_0311964 3300049584 Bacteria 1008
107 Ga0501069_0016890 3300049585 Bacteria 3922
108 Ga0501069_0046440 3300049585 Bacteria 2409
109 Ga0501070_0276191 3300049586 Bacteria 1371
110 Ga0501072_0202394 3300049588 Bacteria 1583
111 Ga0501072_0255032 3300049588 Bacteria 1397
112 Ga0501075_0251854 3300049591 Bacteria 1346
113 Ga0501079_0165632 3300049741 Bacteria 1724
114 Ga0501079_0250693 3300049741 Bacteria 1384
115 Ga0501081_0140157 3300049743 Bacteria 1733
116 nmdc:mga0yw44_78285_c1 3300050492 Bacteria 2067
117 Ga0495601_0018768 3300053077 Bacteria 4211
118 Ga0501084_0458801 3300054114 Bacteria 1077
119 2644230402 2643221641 Bacteria 4490190
120 2740168927 2739367898 Bacteria 4367674
121 2857482560 2857481737 Bacteria 4761446
122 2919526663 2919523602 Bacteria 3788128
123 8054611246 8054609563 Bacteria 5170090
124 Ga0530510_0154929
125 rootH1_10012147
126 rootH1_10189613
127 Ga0058862_10125904
128 Ga0070658_10425072
129 Ga0070683_100113764
130 Ga0070683_100151489
131 Ga0070683_100189099
132 Ga0070680_100163291
133 Ga0070682_100046718
134 Ga0070660_100264054
135 Ga0070661_100335634
136 Ga0070714_100003571
137 Ga0070684_100067504
138 Ga0070684_100171124
139 Ga0068852_100107593
140 Ga0075365_10070588
141 Ga0075365_10102245
142 Ga0075367_10022536
143 Ga0075367_10191673
144 Ga0097621_100310583
145 Ga0105239_10019722
146 Ga0105239_10693471
147 Ga0157369_10510323
148 Ga0157372_10039208
149 Ga0157372_10395689
150 Ga0157372_10537509
151 Ga0182008_10057286
152 Ga0182008_10072452
153 Ga0157376_10739976
154 Ga0206354_10919719
155 Ga0206353_12048550
156 Ga0209677_100764
157 Ga0207705_10102212
158 Ga0207649_10365150
159 Ga0207664_10026476
160 Ga0207706_10318922
161 Ga0207686_10142255
162 Ga0207679_10031426
163 Ga0207678_10007517
164 Ga0207678_10340692
165 Ga0307410_10500151
166 Ga0307409_100055048
167 Ga0395899_0006946
168 Ga0395900_0206350
169 Ga0395900_0627811
170 Ga0395898_0746172
171 Ga0439465_0087758
172 Ga0451802_2177268
173 Ga0451837_0141013
174 Ga0451837_1663825
175 Ga0451853_0026300
176 Ga0451853_1198049
177 Ga0439431_0021785
178 Ga0439434_0002612
179 Ga0466972_0110737
180 Ga0466965_0064079
181 Ga0466961_0181314
182 Ga0466964_0016992
183 Ga0466964_0200329
184 Ga0466964_0215898
185 Ga0466968_0212698
186 Ga0466970_0003563
187 Ga0466970_0109491
188 Ga0466970_0262296
189 Ga0466957_0078408
190 Ga0466957_0087194
191 Ga0466957_0100390
192 Ga0466960_0006363
193 Ga0466960_0057517
194 Ga0466960_0136580
195 Ga0466960_0297986
196 Ga0466959_0072453
197 Ga0466958_0030457
198 Ga0466967_0014732
199 Ga0466967_0117283
200 Ga0466967_0646891
201 Ga0495664_0203291
202 Ga0495657_0123604
203 Ga0495658_0198844
204 Ga0496101_0101193
205 Ga0496102_0114812
206 Ga0496104_0172722
207 Ga0496108_0208939
208 Ga0496108_0511912
209 Ga0496109_0021336
210 Ga0496110_0089259
211 Ga0496110_0136392
212 Ga0496112_0089103
213 Ga0496113_0013403
214 Ga0496113_0139587
215 Ga0501031_0080436
216 Ga0501031_0110165
217 Ga0501031_0150434
218 Ga0501036_0068798
219 Ga0501036_0316300
220 Ga0501036_0336910
221 Ga0501038_0210679
222 Ga0501039_0327346
223 Ga0501040_0171824
224 Ga0501040_0227011
225 Ga0501041_0253308
226 Ga0501042_0136724
227 Ga0501042_0199961
228 Ga0501067_0007549
229 Ga0501068_0311964
230 Ga0501069_0016890
231 Ga0501069_0046440
232 Ga0501070_0276191
233 Ga0501072_0202394
234 Ga0501072_0255032
235 Ga0501075_0251854
236 Ga0501079_0165632
237 Ga0501079_0250693
238 Ga0501081_0140157
239 nmdc:mga0yw44_78285_c1
240 Ga0495601_0018768
241 Ga0501084_0458801
242 2644230402
243 2740168927
244 2857482560
245 2919526663
246 8054611246

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00902

TatC

Sec-independent protein translocase protein (TatC)

28

243

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4htt-assembly2.cif.gz_B crystal structure of twin arginine translocase receptor- tatc in ddm 0.8531 29 256
4htt-assembly2.cif.gz_B crystal structure of twin arginine translocase receptor- tatc in ddm 0.8395 29 256
4hts-assembly1.cif.gz_A crystal structure of twin arginine translocase receptor- tatc 0.8371 29 261
4hts-assembly1.cif.gz_A crystal structure of twin arginine translocase receptor- tatc 0.8306 29 261
7ard-assembly1.cif.gz_Y cryo-em structure of polytomella complex-i (complete composition) 0.4027 130 262
ID Description Score Start End Superfamily
af_Q9URY5_30_174_1.10.490.10 Mainly Alpha;Orthogonal Bundle;Globin-like;Globins 0.3459 122 267 1.10.490.10
af_Q9URY5_30_174_1.10.490.10 Mainly Alpha;Orthogonal Bundle;Globin-like;Globins 0.3421 122 267 1.10.490.10
af_B6TZ69_70_370_1.50.40.10 Mainly Alpha;Alpha/alpha barrel;Mitochondrial carrier fold;Mitochondrial carrier domain 0.3079 3 261 1.50.40.10
af_B6TZ69_70_370_1.50.40.10 Mainly Alpha;Alpha/alpha barrel;Mitochondrial carrier fold;Mitochondrial carrier domain 0.287 3 261 1.50.40.10
af_Q2G1C8_250_402_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.2798 135 268 1.20.140.10
ID Description Score Start End GO Terms
AF-A0A6L6EGZ9-F1-model_v4 Twin-arginine translocase subunit TatC 0.9607 100 266 GO:0009977
GO:0033281
GO:0043953
GO:0065002
AF-A0A7Z0A6A1-F1-model_v4 deleted 0.9491 24 266
AF-A0A6J6I4F9-F1-model_v4 Unannotated protein 0.9486 24 266 GO:0009977
GO:0033281
GO:0043953
GO:0065002
AF-A0A7K0YJ41-F1-model_v4 Sec-independent protein translocase protein TatC 0.9425 20 266 GO:0009977
GO:0033281
GO:0043953
GO:0065002
AF-A0A4Q9KAQ0-F1-model_v4 Sec-independent protein translocase protein TatC 0.9406 24 266 GO:0009977
GO:0033281
GO:0043953
GO:0065002

Map