F113710

General Info

Members Datasets Scaffolds Average Seq Length
122 87 244 319

Family's Representative Sequence

Representative Sequence 3300005983|Ga0081540_1023183|Ga0081540_10231833
Length 348
Sequence MGILRRTEGEPCDVTADLLTRARAGDQEAFRQLVEPYRHHLQLHCYRILGSVHDAEDALQETLLSAWQGLSGFEERASVRTWLYRVATNCCLKVQRSRRRSQSMGRPAPWPDLPEPTRLGQVLWLEPYPDLLLDQLTDTAPGPEARFEAREAVSLAFVTALQLLPPRQRAVLILRDVLGFHAREVAQILDSTEESVTSALKRARATLERRLPKSGEREQPPALGSATEQELVERFTRAFEANDVHSIVSLLTDDVWLTMPPIPLEWQGSDLADRFLAATATRRVQSRLVATRANGQPAFGIYVRDPQAPILHAAGLLVLTLASDRICAMTRFDTSVLAYFGLPRTLPD

Samples

Sample ID Description Type Environment
1 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
2 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
3 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
4 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
17 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
18 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
21 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
27 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
28 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
42 3300033545 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 Metagenome Unclassified
43 3300033547 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 Metagenome Unclassified
44 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
45 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
46 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
47 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
48 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
49 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
50 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
51 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
52 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
53 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
54 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
55 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
56 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
57 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
58 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
59 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
60 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
61 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
62 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
63 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
64 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
65 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
66 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
67 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
68 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
69 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
70 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
71 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
72 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
73 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
74 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
75 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
76 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
77 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
78 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
79 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
80 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
82 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
83 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
84 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
85 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
86 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
87 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.18
Metatranscriptomes 0
Isolates 0.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.46
Nodule 0
Rhizoplane 2.46
Rhizosphere 87.7
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081540_1023183 3300005983 Bacteria 3640
2 Ga0068869_100407958 3300005334 Bacteria 1119
3 Ga0070675_100303451 3300005354 Bacteria 1407
4 Ga0070703_10006132 3300005406 Bacteria 3364
5 Ga0070714_100044280 3300005435 Bacteria 3767
6 Ga0070714_100123375 3300005435 Bacteria 2307
7 Ga0070714_100344955 3300005435 Bacteria 1397
8 Ga0070713_100150154 3300005436 Bacteria 2072
9 Ga0070713_100236974 3300005436 Bacteria 1660
10 Ga0070713_100341045 3300005436 Bacteria 1388
11 Ga0070708_100141874 3300005445 Bacteria 2228
12 Ga0070662_100028048 3300005457 Bacteria 3915
13 Ga0070706_100009437 3300005467 Bacteria 9081
14 Ga0070706_100357733 3300005467 Bacteria 1360
15 Ga0070698_100014894 3300005471 Bacteria 8221
16 Ga0070684_100006741 3300005535 Bacteria 8909
17 Ga0070697_100075245 3300005536 Bacteria 2775
18 Ga0068853_100027756 3300005539 Bacteria 4757
19 Ga0070665_100046256 3300005548 Bacteria 4372
20 Ga0070664_100037589 3300005564 Bacteria 4071
21 Ga0070664_100080502 3300005564 Bacteria 2806
22 Ga0081538_10014220 3300005981 Bacteria 6244
23 Ga0081538_10043948 3300005981 Bacteria 2795
24 Ga0081540_1001360 3300005983 Bacteria 21209
25 Ga0081539_10000503 3300005985 Bacteria 81931
26 Ga0081539_10001219 3300005985 Bacteria 45958
27 Ga0081539_10100504 3300005985 Bacteria 1475
28 Ga0070717_10021007 3300006028 Bacteria 5143
29 Ga0075365_10187188 3300006038 Bacteria 1448
30 Ga0075363_100011038 3300006048 Bacteria 4313
31 Ga0070712_100098991 3300006175 Bacteria 2151
32 Ga0075428_100208169 3300006844 Bacteria 2114
33 Ga0111539_10005344 3300009094 Bacteria 16615
34 Ga0111539_10185920 3300009094 Bacteria 2426
35 Ga0111539_10320394 3300009094 Bacteria 1804
36 Ga0105247_10000517 3300009101 Bacteria 31617
37 Ga0114129_10301870 3300009147 Bacteria 2134
38 Ga0163163_10061196 3300014325 Bacteria 3730
39 Ga0213875_10000102 3300021388 Bacteria 96815
40 Ga0207653_10006349 3300025885 Bacteria 3689
41 Ga0207692_10010032 3300025898 Bacteria 3975
42 Ga0207692_10055196 3300025898 Bacteria 2032
43 Ga0207684_10000818 3300025910 Bacteria 35981
44 Ga0207684_10008912 3300025910 Bacteria 8905
45 Ga0207693_10021523 3300025915 Bacteria 5123
46 Ga0207693_10117555 3300025915 Bacteria 2088
47 Ga0207693_10143615 3300025915 Bacteria 1877
48 Ga0207693_10247729 3300025915 Bacteria 1398
49 Ga0207652_10437637 3300025921 Bacteria 1179
50 Ga0207646_10095438 3300025922 Bacteria 2664
51 Ga0207700_10112280 3300025928 Bacteria 2195
52 Ga0207664_10389425 3300025929 Bacteria 1238
53 Ga0207706_10060836 3300025933 Bacteria 3326
54 Ga0207665_10002423 3300025939 Bacteria 12616
55 Ga0207689_10056919 3300025942 Bacteria 3217
56 Ga0207679_10023725 3300025945 Bacteria 4199
57 Ga0207678_10103829 3300026067 Bacteria 2425
58 Ga0307407_10150049 3300031903 Bacteria 1514
59 Ga0316214_1001828 3300033545 Bacteria 2545
60 Ga0316212_1003610 3300033547 Bacteria 2237
61 Ga0373934_0012158 3300035086 Bacteria 3248
62 Ga0373934_0014930 3300035086 Bacteria 2944
63 Ga0373951_0000041 3300035091 Bacteria 50991
64 Ga0373957_0110940 3300035120 Bacteria 1104
65 Ga0373955_0079869 3300035172 Bacteria 1846
66 Ga0373933_0014519 3300035724 Bacteria 4384
67 Ga0373947_0123236 3300035725 Bacteria 1648
68 Ga0373937_0026242 3300036401 Bacteria 5264
69 Ga0373937_0034805 3300036401 Bacteria 4581
70 Ga0395899_0029798 3300037312 Bacteria 4105
71 Ga0395900_0051415 3300037418 Bacteria 4245
72 Ga0395900_0083339 3300037418 Bacteria 3285
73 Ga0395898_0051728 3300037466 Bacteria 4016
74 Ga0395905_0080473 3300037471 Bacteria 3053
75 Ga0436364_0940223 3300037853 Bacteria 123217
76 Ga0395901_0037454 3300038443 Bacteria 5016
77 Ga0395901_0107293 3300038443 Bacteria 2931
78 Ga0395901_0311645 3300038443 Bacteria 1630
79 Ga0436365_0492483 3300039437 Bacteria 4539
80 Ga0436365_1184577 3300039437 Bacteria 1346
81 Ga0436363_0211556 3300039450 Bacteria 1601
82 Ga0436363_1092288 3300039450 Bacteria 2246
83 Ga0450907_005765 3300042146 Bacteria 2084
84 Ga0453683_0107454 3300044673 Bacteria 1754
85 Ga0466967_0118513 3300045976 Bacteria 2442
86 Ga0466967_0166504 3300045976 Bacteria 2072
87 Ga0466967_0263357 3300045976 Bacteria 1650
88 Ga0495603_0030270 3300046455 Bacteria 3261
89 Ga0495651_0024940 3300046462 Bacteria 4652
90 Ga0495651_0241734 3300046462 Bacteria 1238
91 Ga0495664_0006884 3300046477 Bacteria 6293
92 Ga0495628_0028054 3300046516 Bacteria 4578
93 Ga0495652_0028235 3300046529 Bacteria 4939
94 Ga0495652_0130462 3300046529 Bacteria 1990
95 Ga0495652_0186066 3300046529 Bacteria 1589
96 Ga0495640_0051946 3300046533 Bacteria 2816
97 Ga0495640_0095509 3300046533 Bacteria 1956
98 Ga0495587_0004397 3300046536 Bacteria 9291
99 Ga0495587_0182223 3300046536 Bacteria 1190
100 Ga0495667_0021798 3300046559 Bacteria 4321
101 Ga0495657_0154226 3300046675 Bacteria 1424
102 Ga0495599_0194581 3300046678 Bacteria 1246
103 Ga0495600_0239980 3300046809 Bacteria 1155
104 Ga0495674_0001309 3300047319 Bacteria 24216
105 Ga0495674_0358555 3300047319 Bacteria 1182
106 Ga0495675_0105112 3300047444 Bacteria 1765
107 Ga0495684_0258033 3300047471 Bacteria 1265
108 Ga0495684_0348137 3300047471 Bacteria 1052
109 Ga0495602_0024558 3300048088 Bacteria 5847
110 Ga0495602_0134038 3300048088 Bacteria 1971
111 Ga0496110_0359655 3300048913 Bacteria 1326
112 Ga0496110_0620735 3300048913 Bacteria 980
113 Ga0496115_0188057 3300048918 Bacteria 1706
114 Ga0496126_0014310 3300048929 Bacteria 8023
115 Ga0501047_0006501 3300049581 Bacteria 11003
116 Ga0501035_0006404 3300049822 Bacteria 11067
117 nmdc:mga03n38_10052_c1 3300050490 Bacteria 3466
118 nmdc:mga08y16_27279_c1 3300050511 Bacteria 6017
119 Ga0495612_0026873 3300053078 Bacteria 2313
120 Ga0495655_0016657 3300053083 Bacteria 1587
121 Ga0495595_0036080 3300053084 Bacteria 2242
122 2552112188 2551306166 Bacteria 9731570
123 Ga0081540_1023183
124 Ga0068869_100407958
125 Ga0070675_100303451
126 Ga0070703_10006132
127 Ga0070714_100044280
128 Ga0070714_100123375
129 Ga0070714_100344955
130 Ga0070713_100150154
131 Ga0070713_100236974
132 Ga0070713_100341045
133 Ga0070708_100141874
134 Ga0070662_100028048
135 Ga0070706_100009437
136 Ga0070706_100357733
137 Ga0070698_100014894
138 Ga0070684_100006741
139 Ga0070697_100075245
140 Ga0068853_100027756
141 Ga0070665_100046256
142 Ga0070664_100037589
143 Ga0070664_100080502
144 Ga0081538_10014220
145 Ga0081538_10043948
146 Ga0081540_1001360
147 Ga0081539_10000503
148 Ga0081539_10001219
149 Ga0081539_10100504
150 Ga0070717_10021007
151 Ga0075365_10187188
152 Ga0075363_100011038
153 Ga0070712_100098991
154 Ga0075428_100208169
155 Ga0111539_10005344
156 Ga0111539_10185920
157 Ga0111539_10320394
158 Ga0105247_10000517
159 Ga0114129_10301870
160 Ga0163163_10061196
161 Ga0213875_10000102
162 Ga0207653_10006349
163 Ga0207692_10010032
164 Ga0207692_10055196
165 Ga0207684_10000818
166 Ga0207684_10008912
167 Ga0207693_10021523
168 Ga0207693_10117555
169 Ga0207693_10143615
170 Ga0207693_10247729
171 Ga0207652_10437637
172 Ga0207646_10095438
173 Ga0207700_10112280
174 Ga0207664_10389425
175 Ga0207706_10060836
176 Ga0207665_10002423
177 Ga0207689_10056919
178 Ga0207679_10023725
179 Ga0207678_10103829
180 Ga0307407_10150049
181 Ga0316214_1001828
182 Ga0316212_1003610
183 Ga0373934_0012158
184 Ga0373934_0014930
185 Ga0373951_0000041
186 Ga0373957_0110940
187 Ga0373955_0079869
188 Ga0373933_0014519
189 Ga0373947_0123236
190 Ga0373937_0026242
191 Ga0373937_0034805
192 Ga0395899_0029798
193 Ga0395900_0051415
194 Ga0395900_0083339
195 Ga0395898_0051728
196 Ga0395905_0080473
197 Ga0436364_0940223
198 Ga0395901_0037454
199 Ga0395901_0107293
200 Ga0395901_0311645
201 Ga0436365_0492483
202 Ga0436365_1184577
203 Ga0436363_0211556
204 Ga0436363_1092288
205 Ga0450907_005765
206 Ga0453683_0107454
207 Ga0466967_0118513
208 Ga0466967_0166504
209 Ga0466967_0263357
210 Ga0495603_0030270
211 Ga0495651_0024940
212 Ga0495651_0241734
213 Ga0495664_0006884
214 Ga0495628_0028054
215 Ga0495652_0028235
216 Ga0495652_0130462
217 Ga0495652_0186066
218 Ga0495640_0051946
219 Ga0495640_0095509
220 Ga0495587_0004397
221 Ga0495587_0182223
222 Ga0495667_0021798
223 Ga0495657_0154226
224 Ga0495599_0194581
225 Ga0495600_0239980
226 Ga0495674_0001309
227 Ga0495674_0358555
228 Ga0495675_0105112
229 Ga0495684_0258033
230 Ga0495684_0348137
231 Ga0495602_0024558
232 Ga0495602_0134038
233 Ga0496110_0359655
234 Ga0496110_0620735
235 Ga0496115_0188057
236 Ga0496126_0014310
237 Ga0501047_0006501
238 Ga0501035_0006404
239 nmdc:mga03n38_10052_c1
240 nmdc:mga08y16_27279_c1
241 Ga0495612_0026873
242 Ga0495655_0016657
243 Ga0495595_0036080
244 2552112188

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

33

101

0.96

PF08281

Sigma70_r4_2

Sigma-70, region 4

154

207

0.96

PF04545

Sigma70_r4

Sigma-70, region 4

160

209

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9726 144 192
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.9683 144 194
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.967 144 194
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9605 141 192
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9528 141 191
ID Description Score Start End Superfamily
4cxfA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.981 143 193 1.10.10.10
3vepE00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9686 144 194 1.10.10.10
3vepH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9683 144 194 1.10.10.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.967 144 194 1.10.10.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9605 141 192 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A0Q7C1Q0-F1-model_v4 RNA polymerase subunit sigma-70 0.9296 13 330 GO:0003677
GO:0006352
GO:0016987
AF-A0A5C4JD47-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.9296 2 330 GO:0003677
GO:0006352
GO:0016987
AF-A0A1M4EBK1-F1-model_v4 RNA polymerase sigma-70 factor (EC 2.7.7.6) 0.922 12 119 GO:0001054
GO:0001055
GO:0001056
GO:0001057
GO:0001058
GO:0001066
GO:0006352
GO:0016987
AF-A0A0Q6TV86-F1-model_v4 RNA polymerase subunit sigma-70 0.9213 3 330 GO:0003677
GO:0006352
GO:0016987
AF-A0A1I6AWE8-F1-model_v4 RNA polymerase sigma factor 0.9209 1 316 GO:0003677
GO:0006352
GO:0006950
GO:0016987

Map