F111265

General Info

Members Datasets Scaffolds Average Seq Length
121 35 242 170

Family's Representative Sequence

Representative Sequence 3300044719|Ga0466971_0043860|Ga0466971_0043860_519_1130
Length 203
Sequence LSERNGDIDIEGIAGREPATRHDCGVSRWFRSYGFADVLDDLLVGAYPLDSDDVSTLAQMGIRRVLNLTEDAEYRPGDREEVERALRAAGIEERRLSLTDYGGLPPAAIETAVQEVNAWLDEGMRTYLHCRAGWQRSAAVAAGVVAVRTGREIEAALDYVQLRKPSADPLPHQREDLRRWWETREDGTATDPSGPADRPGPSD

Samples

Sample ID Description Type Environment
1 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
2 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
3 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
4 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
5 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
6 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
7 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
8 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
9 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
10 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
11 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
12 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
13 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
14 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
15 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
16 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
17 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
18 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
19 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
20 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
21 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
22 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
23 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
24 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
25 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
26 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
27 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
28 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
29 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
30 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
31 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
32 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
33 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
34 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
35 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.83
Rhizosphere 64.46
Stem 0
Stem Tuber 0
Unclassified 30.58

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466971_0043860 3300044719 Bacteria 2009
2 Ga0070714_100145573 3300005435 Bacteria 2131
3 Ga0070713_100544830 3300005436 Bacteria 1098
4 Ga0070717_10154146 3300006028 Unclassified 1989
5 Ga0070717_10819394 3300006028 Bacteria 847
6 Ga0075430_100969962 3300006846 Bacteria 700
7 Ga0213874_10180578 3300021377 Bacteria 751
8 Ga0213876_10005955 3300021384 Bacteria 6662
9 Ga0213876_10007154 3300021384 Bacteria 6082
10 Ga0213876_10042865 3300021384 Unclassified 2391
11 Ga0213876_10043239 3300021384 Bacteria 2381
12 Ga0213876_10070299 3300021384 Bacteria 1849
13 Ga0213876_10071407 3300021384 Unclassified 1834
14 Ga0213875_10000295 3300021388 Bacteria 48180
15 Ga0213875_10021742 3300021388 Bacteria 3069
16 Ga0213875_10053002 3300021388 Unclassified 1900
17 Ga0213875_10250164 3300021388 Bacteria 836
18 Ga0213875_10279660 3300021388 Bacteria 788
19 Ga0207664_10008602 3300025929 Bacteria 7133
20 Ga0207664_10450153 3300025929 Unclassified 1149
21 Ga0207664_10507873 3300025929 Unclassified 1080
22 Ga0373933_0811879 3300035724 Bacteria 616
23 Ga0395900_0061758 3300037418 Bacteria 3852
24 Ga0395898_0001613 3300037466 Bacteria 30669
25 Ga0436364_0049644 3300037853 Bacteria 1098
26 Ga0436364_0082729 3300037853 Unclassified 1963
27 Ga0436364_0447336 3300037853 Unclassified 1391
28 Ga0436364_0606633 3300037853 Bacteria 1335
29 Ga0436364_0695021 3300037853 Bacteria 1562
30 Ga0436364_0972046 3300037853 Unclassified 1404
31 Ga0436364_1017737 3300037853 Bacteria 763
32 Ga0436364_1323768 3300037853 Bacteria 3890
33 Ga0436364_1337395 3300037853 Unclassified 1844
34 Ga0436364_1499882 3300037853 Bacteria 31407
35 Ga0436365_0254798 3300039437 Unclassified 3589
36 Ga0436365_0280103 3300039437 Unclassified 1237
37 Ga0436365_0370866 3300039437 Bacteria 1817
38 Ga0436365_0533868 3300039437 Bacteria 7316
39 Ga0436365_0558135 3300039437 Bacteria 14629
40 Ga0436365_0858486 3300039437 Bacteria 22231
41 Ga0436365_0977205 3300039437 Bacteria 18844
42 Ga0436365_1133792 3300039437 Unclassified 2522
43 Ga0436365_1528699 3300039437 Bacteria 9116
44 Ga0436365_1625699 3300039437 Bacteria 4023
45 Ga0436365_1735246 3300039437 Bacteria 1924
46 Ga0436365_1772395 3300039437 Bacteria 13299
47 Ga0436365_1809487 3300039437 Bacteria 776
48 Ga0436365_1919846 3300039437 Unclassified 690
49 Ga0436363_0060867 3300039450 Bacteria 2904
50 Ga0436363_0195852 3300039450 Bacteria 721
51 Ga0436363_0224657 3300039450 Unclassified 566
52 Ga0436363_0919385 3300039450 Unclassified 1030
53 Ga0436363_1196260 3300039450 Bacteria 941
54 Ga0436363_1247930 3300039450 Bacteria 1400
55 Ga0436362_0316197 3300039453 Bacteria 2841
56 Ga0436362_0360072 3300039453 Unclassified 1115
57 Ga0436362_0396628 3300039453 Bacteria 1626
58 Ga0436362_0634115 3300039453 Bacteria 669
59 Ga0436362_0715780 3300039453 Unclassified 1386
60 Ga0436362_0894056 3300039453 Bacteria 2095
61 Ga0466969_0159706 3300044656 Unclassified 1036
62 Ga0466972_0078269 3300044658 Bacteria 1575
63 Ga0466965_0091628 3300044683 Bacteria 1547
64 Ga0466965_0233413 3300044683 Bacteria 983
65 Ga0466966_0043282 3300044684 Bacteria 2887
66 Ga0466966_0202848 3300044684 Archaea 1200
67 Ga0466966_0510305 3300044684 Unclassified 723
68 Ga0466961_0001326 3300044693 Bacteria 15262
69 Ga0466961_0067260 3300044693 Bacteria 2276
70 Ga0466961_0183748 3300044693 Unclassified 1297
71 Ga0466963_0054149 3300044694 Bacteria 2666
72 Ga0466963_0132717 3300044694 Bacteria 1721
73 Ga0466963_0267681 3300044694 Unclassified 1200
74 Ga0466963_0363684 3300044694 Bacteria 1019
75 Ga0466963_0474085 3300044694 Unclassified 883
76 Ga0466963_0494845 3300044694 Unclassified 863
77 Ga0466963_0802522 3300044694 Unclassified 664
78 Ga0466964_0197922 3300044706 Bacteria 963
79 Ga0466964_0459525 3300044706 Bacteria 677
80 Ga0466971_0129442 3300044719 Bacteria 1171
81 Ga0466971_0158202 3300044719 Unclassified 1059
82 Ga0466968_0155095 3300044735 Unclassified 1054
83 Ga0466968_0157345 3300044735 Bacteria 1047
84 Ga0466968_0176846 3300044735 Unclassified 991
85 Ga0466968_0181812 3300044735 Bacteria 978
86 Ga0466968_0194732 3300044735 Bacteria 947
87 Ga0466970_0469238 3300044765 Unclassified 723
88 Ga0466957_0024752 3300044842 Unclassified 3555
89 Ga0466957_0061153 3300044842 Bacteria 2311
90 Ga0466957_0141424 3300044842 Bacteria 1550
91 Ga0466957_0162471 3300044842 Bacteria 1451
92 Ga0466957_0565985 3300044842 Unclassified 793
93 Ga0466960_0205992 3300044901 Bacteria 1077
94 Ga0466959_0000917 3300045049 Bacteria 17451
95 Ga0466959_0007939 3300045049 Bacteria 7475
96 Ga0466959_0067285 3300045049 Bacteria 2597
97 Ga0466959_0074948 3300045049 Bacteria 2446
98 Ga0466959_0093473 3300045049 Bacteria 2158
99 Ga0466959_0194424 3300045049 Bacteria 1415
100 Ga0466959_0224653 3300045049 Unclassified 1301
101 Ga0466959_0325636 3300045049 Bacteria 1050
102 Ga0466959_0353718 3300045049 Bacteria 1001
103 Ga0466959_0428904 3300045049 Unclassified 897
104 Ga0466958_0006265 3300045836 Bacteria 6461
105 Ga0466958_0048969 3300045836 Bacteria 2555
106 Ga0466958_0066103 3300045836 Bacteria 2207
107 Ga0466958_0078899 3300045836 Bacteria 2024
108 Ga0466958_0125805 3300045836 Bacteria 1607
109 Ga0466958_0195070 3300045836 Bacteria 1288
110 Ga0466958_0388482 3300045836 Archaea 900
111 Ga0466958_0743716 3300045836 Unclassified 639
112 Ga0466967_0020844 3300045976 Bacteria 5309
113 Ga0466967_0446930 3300045976 Unclassified 1263
114 Ga0466967_0790972 3300045976 Unclassified 942
115 Ga0466967_0872044 3300045976 Bacteria 895
116 Ga0495652_0854655 3300046529 Bacteria 603
117 Ga0496111_0695545 3300048914 Unclassified 740
118 Ga0495601_0087175 3300053077 Bacteria 2007
119 Ga0495612_0454262 3300053078 Bacteria 585
120 Ga0466962_0004719 3300061719 Bacteria 6550
121 Ga0466962_0036160 3300061719 Bacteria 2363
122 Ga0466971_0043860
123 Ga0070714_100145573
124 Ga0070713_100544830
125 Ga0070717_10154146
126 Ga0070717_10819394
127 Ga0075430_100969962
128 Ga0213874_10180578
129 Ga0213876_10005955
130 Ga0213876_10007154
131 Ga0213876_10042865
132 Ga0213876_10043239
133 Ga0213876_10070299
134 Ga0213876_10071407
135 Ga0213875_10000295
136 Ga0213875_10021742
137 Ga0213875_10053002
138 Ga0213875_10250164
139 Ga0213875_10279660
140 Ga0207664_10008602
141 Ga0207664_10450153
142 Ga0207664_10507873
143 Ga0373933_0811879
144 Ga0395900_0061758
145 Ga0395898_0001613
146 Ga0436364_0049644
147 Ga0436364_0082729
148 Ga0436364_0447336
149 Ga0436364_0606633
150 Ga0436364_0695021
151 Ga0436364_0972046
152 Ga0436364_1017737
153 Ga0436364_1323768
154 Ga0436364_1337395
155 Ga0436364_1499882
156 Ga0436365_0254798
157 Ga0436365_0280103
158 Ga0436365_0370866
159 Ga0436365_0533868
160 Ga0436365_0558135
161 Ga0436365_0858486
162 Ga0436365_0977205
163 Ga0436365_1133792
164 Ga0436365_1528699
165 Ga0436365_1625699
166 Ga0436365_1735246
167 Ga0436365_1772395
168 Ga0436365_1809487
169 Ga0436365_1919846
170 Ga0436363_0060867
171 Ga0436363_0195852
172 Ga0436363_0224657
173 Ga0436363_0919385
174 Ga0436363_1196260
175 Ga0436363_1247930
176 Ga0436362_0316197
177 Ga0436362_0360072
178 Ga0436362_0396628
179 Ga0436362_0634115
180 Ga0436362_0715780
181 Ga0436362_0894056
182 Ga0466969_0159706
183 Ga0466972_0078269
184 Ga0466965_0091628
185 Ga0466965_0233413
186 Ga0466966_0043282
187 Ga0466966_0202848
188 Ga0466966_0510305
189 Ga0466961_0001326
190 Ga0466961_0067260
191 Ga0466961_0183748
192 Ga0466963_0054149
193 Ga0466963_0132717
194 Ga0466963_0267681
195 Ga0466963_0363684
196 Ga0466963_0474085
197 Ga0466963_0494845
198 Ga0466963_0802522
199 Ga0466964_0197922
200 Ga0466964_0459525
201 Ga0466971_0129442
202 Ga0466971_0158202
203 Ga0466968_0155095
204 Ga0466968_0157345
205 Ga0466968_0176846
206 Ga0466968_0181812
207 Ga0466968_0194732
208 Ga0466970_0469238
209 Ga0466957_0024752
210 Ga0466957_0061153
211 Ga0466957_0141424
212 Ga0466957_0162471
213 Ga0466957_0565985
214 Ga0466960_0205992
215 Ga0466959_0000917
216 Ga0466959_0007939
217 Ga0466959_0067285
218 Ga0466959_0074948
219 Ga0466959_0093473
220 Ga0466959_0194424
221 Ga0466959_0224653
222 Ga0466959_0325636
223 Ga0466959_0353718
224 Ga0466959_0428904
225 Ga0466958_0006265
226 Ga0466958_0048969
227 Ga0466958_0066103
228 Ga0466958_0078899
229 Ga0466958_0125805
230 Ga0466958_0195070
231 Ga0466958_0388482
232 Ga0466958_0743716
233 Ga0466967_0020844
234 Ga0466967_0446930
235 Ga0466967_0790972
236 Ga0466967_0872044
237 Ga0495652_0854655
238 Ga0496111_0695545
239 Ga0495601_0087175
240 Ga0495612_0454262
241 Ga0466962_0004719
242 Ga0466962_0036160

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22785

Tc-R-P

Polymorphic toxin system, DSP-PTPase phosphatase

46

151

0.92

PF22784

PTP-SAK

Swiss Army Knife protein, DSP-PTPase phosphatase domain

39

188

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
5z5a-assembly3.cif.gz_C crystal structure of tk-ptp in the active form 0.8804 11 159
5z5b-assembly3.cif.gz_C crystal structure of tk-ptp in the g95a mutant form 0.8733 11 159
2j16-assembly1.cif.gz_A apo & sulphate bound forms of sdp-1 0.8625 9 155
2i6o-assembly1.cif.gz_A crystal structure of the complex of the archaeal sulfolobus ptp-fold phosphatase with phosphopeptides n-g-(p)y-k-n 0.8531 19 154
8otz-assembly1.cif.gz_l 48-nm repeat of the native axonemal doublet microtubule from bovine sperm 0.8491 11 160
ID Description Score Start End Superfamily
5z5aA00 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Protein tyrosine phosphatase superfamily 0.8753 12 159 3.90.190.10
af_Q7XC53_86_235_3.90.190.10 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Protein tyrosine phosphatase superfamily 0.8697 10 160 3.90.190.10
af_A0A0G2KB18_130_293_3.90.190.10 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Protein tyrosine phosphatase superfamily 0.8693 12 160 3.90.190.10
af_O77334_294_456_3.90.190.10 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Protein tyrosine phosphatase superfamily 0.8691 82 158 3.90.190.10
af_Q9UAX0_81_234_3.90.190.10 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Protein tyrosine phosphatase superfamily 0.8683 29 160 3.90.190.10
ID Description Score Start End GO Terms
AF-H0E9S2-F1-model_v4 Tyrosine specific protein phosphatases domain-containing protein 0.9716 1 161
AF-H0E9S2-F1-model_v4 Tyrosine specific protein phosphatases domain-containing protein 0.9657 1 161
AF-A0A6N7YGI4-F1-model_v4 Tyrosine specific protein phosphatases domain-containing protein 0.9655 2 161 GO:0016787
AF-A0A2T4UD54-F1-model_v4 Tyrosine specific protein phosphatases domain-containing protein 0.9633 2 161 GO:0016787
AF-A0A7W0G8H2-F1-model_v4 Dual specificity protein phosphatase family protein 0.949 10 159 GO:0004721

Map