F111229

General Info

Members Datasets Scaffolds Average Seq Length
121 92 242 370

Family's Representative Sequence

Representative Sequence 3300044693|Ga0466961_0040458|Ga0466961_0040458_27_1286
Length 419
Sequence VNDRRRRPTRQAAPEHRASRRARSRQPRGRSRVGERFEAVVGPVAHGGHFVVRVPAAAPGAADSPDSLDTSGPTRDDMRVVFVRHALPGERVVVEITEGTDGDRFWRGDAVEVVEAAAERVPPPCPYAGPGKCGGCDFQHVAVPAQRSLKAAVLREQLTRLARLAPGDPVLDTPVEQVPGDDDGLRWRTRQSFARTADGSRAMRLHRSHEVIPVEDCLIARTDAREPASGTVTETVTAAGVTKDFTVAADGFWQVHPGAPTTLVETVLTMLEPRPGERVLDLYAGVGLFAAFLADRVGPQGHVLAVEGDPRASGLSRGNVPQAEVVAGDVAQVLATAEPSPVDLVVLDPPREGARRAVVEQVAARSPRAVAYVACDPAALARDTAIFAEHGYRLDALRAFDLFPMTHHFECVALLVPQE

Samples

Sample ID Description Type Environment
1 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
5 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
6 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
7 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
8 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
11 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
12 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
13 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
14 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
15 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
16 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
17 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
18 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
19 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
22 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
23 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
24 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
25 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
26 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
27 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
28 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
38 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
39 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
40 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
41 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
42 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
43 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
44 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
45 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
46 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
47 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
48 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
49 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
50 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
51 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
52 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
53 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
54 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
55 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
57 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
58 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
59 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
60 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
62 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
63 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
64 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
65 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
66 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
67 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
68 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
69 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
70 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
71 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
72 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
75 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
76 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
77 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
78 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
79 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
80 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
81 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
82 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
83 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
84 2643221604 Nocardioides sp. Root190 Isolate Unclassified
85 2643221615 Nocardioides sp. Root224 Isolate Unclassified
86 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
87 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
88 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
89 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
90 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
91 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
92 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.74
Metatranscriptomes 0.83
Isolates 7.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.36
Nodule 0
Rhizoplane 1.65
Rhizosphere 71.9
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466961_0040458 3300044693 Bacteria 2989
2 Ga0070658_10078508 3300005327 Bacteria 2710
3 Ga0070683_100036955 3300005329 Bacteria 4469
4 Ga0070691_10014345 3300005341 Bacteria 3634
5 Ga0070687_100062264 3300005343 Bacteria 1975
6 Ga0070700_100082304 3300005441 Bacteria 2081
7 Ga0070663_100156810 3300005455 Bacteria 1750
8 Ga0068867_100005704 3300005459 Bacteria 8826
9 Ga0070698_100010433 3300005471 Bacteria 9920
10 Ga0070672_100036447 3300005543 Bacteria 3747
11 Ga0070686_100153872 3300005544 Bacteria 1613
12 Ga0068854_100109261 3300005578 Bacteria 2084
13 Ga0075365_10015098 3300006038 Bacteria 4663
14 Ga0075365_10047306 3300006038 Bacteria 2827
15 Ga0075365_10119350 3300006038 Bacteria 1818
16 Ga0075365_10146134 3300006038 Bacteria 1643
17 Ga0075365_10164706 3300006038 Bacteria 1546
18 Ga0075368_10001063 3300006042 Bacteria 8600
19 Ga0075363_100005645 3300006048 Bacteria 5595
20 Ga0075364_10037855 3300006051 Bacteria 3125
21 Ga0075367_10008362 3300006178 Bacteria 5360
22 Ga0075370_10034032 3300006353 Bacteria 2855
23 Ga0111539_10680486 3300009094 Bacteria 1198
24 Ga0105245_10038204 3300009098 Bacteria 4271
25 Ga0105248_10057970 3300009177 Bacteria 4348
26 Ga0105249_10069811 3300009553 Bacteria 3243
27 Ga0105239_10195510 3300010375 Bacteria 2265
28 Ga0157372_10020744 3300013307 Bacteria 7095
29 Ga0163163_10033657 3300014325 Bacteria 4959
30 Ga0182008_10054696 3300014497 Bacteria 1974
31 Ga0206353_10027676 3300020082 Bacteria 2394
32 Ga0207662_10037485 3300025918 Bacteria 2837
33 Ga0207690_10073626 3300025932 Bacteria 2363
34 Ga0207691_10008577 3300025940 Bacteria 9810
35 Ga0207639_10032766 3300026041 Bacteria 3828
36 Ga0207678_10166702 3300026067 Bacteria 1881
37 Ga0207678_10170546 3300026067 Bacteria 1858
38 Ga0207708_10000227 3300026075 Bacteria 44512
39 Ga0207648_10009320 3300026089 Bacteria 9408
40 Ga0207675_100003582 3300026118 Bacteria 15138
41 Ga0207683_10228040 3300026121 Bacteria 1698
42 Ga0395900_0123733 3300037418 Bacteria 2653
43 Ga0466972_0105319 3300044658 Bacteria 1334
44 Ga0466966_0165830 3300044684 Bacteria 1344
45 Ga0466963_0010592 3300044694 Bacteria 5589
46 Ga0466964_0042996 3300044706 Bacteria 1832
47 Ga0466970_0028186 3300044765 Bacteria 2950
48 Ga0466957_0050783 3300044842 Bacteria 2524
49 Ga0466960_0002006 3300044901 Bacteria 7549
50 Ga0466967_0068654 3300045976 Bacteria 3166
51 Ga0466967_0094237 3300045976 Bacteria 2726
52 Ga0495672_0073432 3300047320 Bacteria 1929
53 Ga0496104_0073266 3300048907 Bacteria 3258
54 Ga0496114_0109979 3300048917 Bacteria 2360
55 Ga0496124_0169772 3300048927 Bacteria 1691
56 Ga0496126_0000022 3300048929 Bacteria 464393
57 Ga0501032_0013272 3300049569 Bacteria 5864
58 Ga0501032_0018810 3300049569 Bacteria 4834
59 Ga0501033_0002176 3300049570 Bacteria 16916
60 Ga0501034_0002826 3300049571 Bacteria 20262
61 Ga0501034_0130629 3300049571 Bacteria 2495
62 Ga0501034_0184172 3300049571 Bacteria 2052
63 Ga0501036_0004236 3300049572 Bacteria 11565
64 Ga0501036_0029231 3300049572 Bacteria 4659
65 Ga0501036_0160874 3300049572 Bacteria 1893
66 Ga0501036_0242728 3300049572 Bacteria 1511
67 Ga0501037_0027445 3300049573 Bacteria 4206
68 Ga0501037_0036361 3300049573 Bacteria 3629
69 Ga0501038_0001739 3300049574 Bacteria 20245
70 Ga0501038_0163805 3300049574 Bacteria 1805
71 Ga0501039_0011086 3300049575 Bacteria 6869
72 Ga0501039_0126848 3300049575 Bacteria 2002
73 Ga0501039_0235374 3300049575 Bacteria 1440
74 Ga0501041_0130031 3300049577 Bacteria 1568
75 Ga0501042_0025368 3300049578 Bacteria 4163
76 Ga0501042_0109940 3300049578 Bacteria 1985
77 Ga0501046_0000096 3300049580 Bacteria 94786
78 Ga0501046_0000617 3300049580 Bacteria 34979
79 Ga0501048_0000591 3300049582 Bacteria 25746
80 Ga0501067_0000467 3300049583 Bacteria 22014
81 Ga0501067_0076360 3300049583 Bacteria 1856
82 Ga0501068_0084594 3300049584 Bacteria 1951
83 Ga0501069_0008443 3300049585 Bacteria 5414
84 Ga0501069_0132879 3300049585 Bacteria 1426
85 Ga0501070_0007120 3300049586 Bacteria 9498
86 Ga0501071_0211822 3300049587 Bacteria 1457
87 Ga0501072_0011397 3300049588 Bacteria 6795
88 Ga0501073_0005531 3300049589 Bacteria 9460
89 Ga0501073_0131309 3300049589 Bacteria 1736
90 Ga0501074_0008366 3300049590 Bacteria 7499
91 Ga0501074_0033100 3300049590 Bacteria 3746
92 Ga0501074_0210533 3300049590 Bacteria 1385
93 Ga0501079_0190830 3300049741 Bacteria 1599
94 Ga0501080_0039751 3300049742 Bacteria 4390
95 Ga0501035_0007454 3300049822 Bacteria 10219
96 Ga0501044_0009916 3300049823 Bacteria 10347
97 Ga0501045_0019017 3300049824 Bacteria 4893
98 Ga0501045_0040827 3300049824 Bacteria 3374
99 nmdc:mga00v17_68549_c1 3300050491 Bacteria 2193
100 nmdc:mga00v17_9339_c1 3300050491 Bacteria 5302
101 nmdc:mga0yw44_170839_c1 3300050492 Bacteria 1427
102 nmdc:mga0yw44_18900_c1 3300050492 Bacteria 3787
103 nmdc:mga0yw44_21246_c1 3300050492 Bacteria 3617
104 nmdc:mga0yw44_30399_c1 3300050492 Bacteria 3129
105 nmdc:mga0yw44_92792_c1 3300050492 Bacteria 1911
106 nmdc:mga06z11_3468_c1 3300050494 Bacteria 6107
107 Ga0500556_0000823 3300053104 Bacteria 17936
108 Ga0500593_000350 3300053117 Bacteria 18674
109 Ga0500573_0003978 3300053140 Bacteria 7717
110 Ga0501084_0233229 3300054114 Bacteria 1553
111 Ga0501082_0016706 3300060353 Bacteria 6320
112 Ga0530510_0136408 3300061734 Bacteria 1807
113 2644034430 2643221604 Bacteria 5014917
114 2644089432 2643221615 Bacteria 5487866
115 2644319277 2643221657 Bacteria 5490246
116 2774392415 2773857762 Bacteria 5971770
117 2809196209 2808606439 Bacteria 5952208
118 2812351637 2811994878 Bacteria 5992952
119 2855387931 2855386786 Bacteria 4752232
120 2857484307 2857481737 Bacteria 4761446
121 2891970751 2891968417 Bacteria 5821697
122 Ga0466961_0040458
123 Ga0070658_10078508
124 Ga0070683_100036955
125 Ga0070691_10014345
126 Ga0070687_100062264
127 Ga0070700_100082304
128 Ga0070663_100156810
129 Ga0068867_100005704
130 Ga0070698_100010433
131 Ga0070672_100036447
132 Ga0070686_100153872
133 Ga0068854_100109261
134 Ga0075365_10015098
135 Ga0075365_10047306
136 Ga0075365_10119350
137 Ga0075365_10146134
138 Ga0075365_10164706
139 Ga0075368_10001063
140 Ga0075363_100005645
141 Ga0075364_10037855
142 Ga0075367_10008362
143 Ga0075370_10034032
144 Ga0111539_10680486
145 Ga0105245_10038204
146 Ga0105248_10057970
147 Ga0105249_10069811
148 Ga0105239_10195510
149 Ga0157372_10020744
150 Ga0163163_10033657
151 Ga0182008_10054696
152 Ga0206353_10027676
153 Ga0207662_10037485
154 Ga0207690_10073626
155 Ga0207691_10008577
156 Ga0207639_10032766
157 Ga0207678_10166702
158 Ga0207678_10170546
159 Ga0207708_10000227
160 Ga0207648_10009320
161 Ga0207675_100003582
162 Ga0207683_10228040
163 Ga0395900_0123733
164 Ga0466972_0105319
165 Ga0466966_0165830
166 Ga0466963_0010592
167 Ga0466964_0042996
168 Ga0466970_0028186
169 Ga0466957_0050783
170 Ga0466960_0002006
171 Ga0466967_0068654
172 Ga0466967_0094237
173 Ga0495672_0073432
174 Ga0496104_0073266
175 Ga0496114_0109979
176 Ga0496124_0169772
177 Ga0496126_0000022
178 Ga0501032_0013272
179 Ga0501032_0018810
180 Ga0501033_0002176
181 Ga0501034_0002826
182 Ga0501034_0130629
183 Ga0501034_0184172
184 Ga0501036_0004236
185 Ga0501036_0029231
186 Ga0501036_0160874
187 Ga0501036_0242728
188 Ga0501037_0027445
189 Ga0501037_0036361
190 Ga0501038_0001739
191 Ga0501038_0163805
192 Ga0501039_0011086
193 Ga0501039_0126848
194 Ga0501039_0235374
195 Ga0501041_0130031
196 Ga0501042_0025368
197 Ga0501042_0109940
198 Ga0501046_0000096
199 Ga0501046_0000617
200 Ga0501048_0000591
201 Ga0501067_0000467
202 Ga0501067_0076360
203 Ga0501068_0084594
204 Ga0501069_0008443
205 Ga0501069_0132879
206 Ga0501070_0007120
207 Ga0501071_0211822
208 Ga0501072_0011397
209 Ga0501073_0005531
210 Ga0501073_0131309
211 Ga0501074_0008366
212 Ga0501074_0033100
213 Ga0501074_0210533
214 Ga0501079_0190830
215 Ga0501080_0039751
216 Ga0501035_0007454
217 Ga0501044_0009916
218 Ga0501045_0019017
219 Ga0501045_0040827
220 nmdc:mga00v17_68549_c1
221 nmdc:mga00v17_9339_c1
222 nmdc:mga0yw44_170839_c1
223 nmdc:mga0yw44_18900_c1
224 nmdc:mga0yw44_21246_c1
225 nmdc:mga0yw44_30399_c1
226 nmdc:mga0yw44_92792_c1
227 nmdc:mga06z11_3468_c1
228 Ga0500556_0000823
229 Ga0500593_000350
230 Ga0500573_0003978
231 Ga0501084_0233229
232 Ga0501082_0016706
233 Ga0530510_0136408
234 2644034430
235 2644089432
236 2644319277
237 2774392415
238 2809196209
239 2812351637
240 2855387931
241 2857484307
242 2891970751

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01938

TRAM

TRAM domain

30

111

0.86

PF05958

tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

339

418

0.84

PF05175

MTS

Methyltransferase small domain

261

371

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1n2x-assembly1.cif.gz_A crystal structure analysis of tm0872, a putative sam-dependent methyltransferase, complexed with sam 0.8698 208 302
1n2x-assembly2.cif.gz_B crystal structure analysis of tm0872, a putative sam-dependent methyltransferase, complexed with sam 0.845 208 302
5xj1-assembly1.cif.gz_A crystal structure of sprlmcd 0.8288 12 369
5zq8-assembly1.cif.gz_B crystal structure of sprlmcd with u747 stemloop rna 0.8248 12 370
7pnv-assembly1.cif.gz_b assembly intermediate of mouse mitochondrial ribosome small subunit without ms37 in complex with rbfa and mettl15 0.8146 207 302
ID Description Score Start End Superfamily
af_C7J169_1_82_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9379 207 272 3.40.50.150
af_O07191_4_80_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9324 7 83 2.40.50.140
af_O07191_4_80_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9209 7 83 2.40.50.140
af_Q6EQW4_99_328_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9052 213 273 3.40.50.150
af_O07191_202_403_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9011 155 369 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A7Y5KJ69-F1-model_v4 Class I SAM-dependent RNA methyltransferase 0.9701 296 373 GO:0070041
GO:0070475
AF-A0A1F9VR53-F1-model_v4 tRNA (Uracil-5-)-methyltransferase 0.9656 297 371 GO:0070041
GO:0070475
AF-A0A6B3I6T0-F1-model_v4 RNA methyltransferase 0.9629 248 373 GO:0070041
GO:0070475
AF-A0A1Q9EEZ8-F1-model_v4 Putative arsenite methyltransferase 0.9626 213 276 GO:0005829
GO:0008168
GO:0016788
GO:0032259
GO:0046872
AF-A0A3N5SC85-F1-model_v4 Arsenite methyltransferase (EC 2.1.1.137) 0.9584 219 274 GO:0008168
GO:0032259

Map