F107208

General Info

Members Datasets Scaffolds Average Seq Length
120 105 101 388

Family's Representative Sequence

Representative Sequence 3300046472|Ga0495580_0041001|Ga0495580_0041001_1525_2844
Length 439
Sequence LNDRDSRENLCTLPSGFAGFFLSAYAINGAGIMIGNAIRKTTGSISDFLRLESAGGLLLAATAALALICSNTPLRATYDGLLKIPVEIRFGSFVLAKPLLLWINDGLMAIFFLLVGLEVKREVVEGELSTPAQVVLPVVAGVGGMVVPALVFFIINRESGVALNGWAIPTATDIAFALGILSLLGDRVPVSLKIFLTAVAIADDLGAIVIIALFYTADLSLSMLIFAAIAIALLVALNLFKVTRIAPYMIIGVILWVFVLKSGVHATLAGVAAAFAVPLKTTDAEGHAPLHRLEHGLHPWVAFGVLPIFAFANAGVSFAGITLAALSEPLPLGIAAGLFAGKCIGVAGASAVLIGLGLAKLPARANWPQMAGVAALCGVGFTMSLFIGSLAFEGPEYFTPIRLGVIAGSLLSGITGYLLLRFSPGHSATISPHSPLVEP

Samples

Sample ID Description Type Environment
1 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
2 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
3 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
4 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
5 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
6 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
7 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
8 2896184354 Aurantiacibacter suaedae GH3-15 Isolate Rhizosphere
9 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
10 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
11 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
12 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
13 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
14 2921643360 Paraburkholderia steynii HC1.1ba Isolate Nodule
15 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
16 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
17 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
18 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
19 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
20 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
21 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
22 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
23 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
24 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
25 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
31 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
32 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
36 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
37 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
38 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
39 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
40 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
41 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
42 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
43 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
44 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
45 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
46 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
47 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
48 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
49 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
50 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
51 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
52 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
53 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
54 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
55 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
56 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
57 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
58 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
59 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
60 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
61 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
62 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
63 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
64 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
65 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
66 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
67 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
68 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
69 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
70 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
71 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
72 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
73 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
74 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
75 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
76 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
77 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
78 3300049535 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
79 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
84 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
85 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
86 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
87 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
88 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
89 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
90 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
91 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
92 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
93 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
94 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
95 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
96 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
97 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
98 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
99 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
100 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
101 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
102 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
103 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
104 8055301274 Paraburkholderia kirstenboschensis LMG 28727 Isolate Nodule
105 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.33
Metatranscriptomes 0.83
Isolates 15.83

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.67
Nodule 1.67
Rhizoplane 3.33
Rhizosphere 73.33
Stem 0
Stem Tuber 0
Unclassified 15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065704_10002879 3300005289 Bacteria 10037
2 Ga0070668_100266513 3300005347 Bacteria 1426
3 Ga0070695_100069622 3300005545 Bacteria 2300
4 Ga0075365_10175662 3300006038 Bacteria 1496
5 Ga0075369_10041890 3300006186 Bacteria 1961
6 Ga0075370_10074423 3300006353 Bacteria 1946
7 Ga0105243_10000012 3300009148 Bacteria 300885
8 Ga0105241_10015611 3300009174 Bacteria 5565
9 Ga0105249_10009657 3300009553 Bacteria 8455
10 Ga0105239_10213756 3300010375 Bacteria 2162
11 Ga0157370_10000018 3300013104 Bacteria 169223
12 Ga0157370_10136482 3300013104 Bacteria 2286
13 Ga0163162_10013639 3300013306 Bacteria 7940
14 Ga0163162_10020114 3300013306 Bacteria 6554
15 Ga0157375_10198723 3300013308 Bacteria 2160
16 Ga0182006_1004430 3300015261 Bacteria 6932
17 Ga0163161_10002279 3300017792 Bacteria 13770
18 Ga0163161_10006023 3300017792 Bacteria 8403
19 Ga0163161_10017141 3300017792 Bacteria 5066
20 Ga0207694_10152151 3300025924 Bacteria 1864
21 Ga0207709_10000006 3300025935 Bacteria 800946
22 Ga0207667_10019007 3300025949 Bacteria 7683
23 Ga0307511_10000971 3300030521 Bacteria 30416
24 Ga0307410_10196399 3300031852 Bacteria 1538
25 Ga0307406_10142140 3300031901 Bacteria 1700
26 Ga0307412_10136255 3300031911 Bacteria 1792
27 Ga0307409_100050789 3300031995 Bacteria 3170
28 Ga0307414_10023635 3300032004 Bacteria 3902
29 Ga0307414_10059709 3300032004 Bacteria 2694
30 Ga0307414_10078002 3300032004 Bacteria 2413
31 Ga0307411_10074298 3300032005 Bacteria 2316
32 Ga0436364_0585420 3300037853 Bacteria 1490
33 Ga0495627_002466 3300046453 Bacteria 8876
34 Ga0495603_0004049 3300046455 Bacteria 8724
35 Ga0495629_0001253 3300046459 Bacteria 19925
36 Ga0495638_0046801 3300046460 Bacteria 2715
37 Ga0495650_0003229 3300046471 Bacteria 12103
38 Ga0495580_0041001 3300046472 Bacteria 3304
39 Ga0495580_0256858 3300046472 Bacteria 1195
40 Ga0495605_0001773 3300046474 Bacteria 13843
41 Ga0495664_0102964 3300046477 Bacteria 1720
42 Ga0495606_0009626 3300046507 Bacteria 8142
43 Ga0495643_0008135 3300046522 Bacteria 6676
44 Ga0495644_0003054 3300046523 Bacteria 6628
45 Ga0495642_0014460 3300046528 Bacteria 3058
46 Ga0495642_0080729 3300046528 Bacteria 1369
47 Ga0495654_0053245 3300046530 Bacteria 1968
48 Ga0495586_0152378 3300046535 Bacteria 1301
49 Ga0495645_0000937 3300046543 Bacteria 19873
50 Ga0495613_0053704 3300046689 Bacteria 2964
51 Ga0495670_0071974 3300046691 Bacteria 1751
52 Ga0495649_0016895 3300046694 Bacteria 4130
53 Ga0495589_0061707 3300046794 Bacteria 1839
54 Ga0495589_0085323 3300046794 Bacteria 1534
55 Ga0495680_0116190 3300047322 Bacteria 1979
56 Ga0495683_0001463 3300047323 Bacteria 15468
57 Ga0495687_008661 3300047443 Bacteria 5796
58 Ga0495679_032133 3300047446 Bacteria 1687
59 Ga0495593_0043824 3300047673 Bacteria 2396
60 Ga0496100_0020163 3300048903 Bacteria 3993
61 Ga0496101_0038125 3300048904 Bacteria 3412
62 Ga0496102_0055309 3300048905 Bacteria 3619
63 Ga0496104_0074600 3300048907 Bacteria 3229
64 Ga0496116_0005779 3300048919 Bacteria 11366
65 Ga0496116_0019043 3300048919 Bacteria 5271
66 Ga0496117_0047178 3300048920 Bacteria 3092
67 Ga0496122_0006375 3300048925 Bacteria 13570
68 Ga0496122_0008967 3300048925 Bacteria 10635
69 Ga0496123_0022639 3300048926 Bacteria 4835
70 Ga0496123_0049620 3300048926 Bacteria 2812
71 Ga0496124_0029524 3300048927 Bacteria 4884
72 Ga0496125_0000213 3300048928 Bacteria 119068
73 Ga0496125_0056032 3300048928 Bacteria 3205
74 Ga0496126_0034273 3300048929 Bacteria 4769
75 Ga0501319_001073 3300049535 Bacteria 1505
76 Ga0501039_0052731 3300049575 Bacteria 3146
77 Ga0501041_0005584 3300049577 Bacteria 7356
78 Ga0501042_0070051 3300049578 Bacteria 2508
79 Ga0501047_0099233 3300049581 Bacteria 2791
80 Ga0501068_0047665 3300049584 Bacteria 2585
81 Ga0501071_0020628 3300049587 Bacteria 4582
82 Ga0501072_0047406 3300049588 Bacteria 3384
83 Ga0501074_0083047 3300049590 Bacteria 2297
84 Ga0501075_0020083 3300049591 Bacteria 4852
85 Ga0501076_0109096 3300049592 Bacteria 2236
86 Ga0501079_0016778 3300049741 Bacteria 5593
87 Ga0501080_0051944 3300049742 Bacteria 3815
88 Ga0501081_0018098 3300049743 Bacteria 4675
89 Ga0501083_0022107 3300049744 Bacteria 4415
90 Ga0501045_0050678 3300049824 Bacteria 3029
91 nmdc:mga0yw44_214444_c1 3300050492 Bacteria 1274
92 Ga0500646_0002934 3300053090 Bacteria 4379
93 Ga0500641_0000061 3300053096 Bacteria 46429
94 Ga0500562_004273 3300053108 Bacteria 3615
95 Ga0500568_0010696 3300053139 Bacteria 4286
96 Ga0501084_0004918 3300054114 Bacteria 10917
97 Ga0590071_013601 3300059421 Bacteria 1906
98 Ga0590077_007104 3300059426 Bacteria 2294
99 Ga0501082_0007375 3300060353 Bacteria 9489
100 Ga0501082_0023308 3300060353 Bacteria 5340
101 Ga0530510_0014946 3300061734 Bacteria 5481

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013104 Ga0157370_10000018 Ga0157370_10000018152 304
2 3300046472 Ga0495580_0256858 Ga0495580_0256858_13_1002 316
3 3300046528 Ga0495642_0014460 Ga0495642_0014460_2048_3037 316
4 3300046535 Ga0495586_0152378 Ga0495586_0152378_28_1017 316
5 3300049742 Ga0501080_0051944 Ga0501080_0051944_16_1122 333
6 3300049535 Ga0501319_001073 Ga0501319_001073_346_1437 341
7 3300013104 Ga0157370_10136482 Ga0157370_101364822 356
8 3300046507 Ga0495606_0009626 Ga0495606_0009626_3947_5134 357
9 3300037853 Ga0436364_0585420 Ga0436364_0585420_150_1337 362
10 3300060353 Ga0501082_0023308 Ga0501082_0023308_2541_3743 363
11 3300049744 Ga0501083_0022107 Ga0501083_0022107_2545_3747 364
12 3300053108 Ga0500562_004273 Ga0500562_004273_2080_3189 365
13 3300009553 Ga0105249_10009657 Ga0105249_100096573 367
14 3300046689 Ga0495613_0053704 Ga0495613_0053704_398_1594 367
15 3300047322 Ga0495680_0116190 Ga0495680_0116190_252_1448 367
16 3300017792 Ga0163161_10006023 Ga0163161_100060232 368
17 3300013306 Ga0163162_10013639 Ga0163162_1001363910 369
18 3300048928 Ga0496125_0056032 Ga0496125_0056032_905_2092 369
19 3300032004 Ga0307414_10059709 Ga0307414_100597092 372
20 3300017792 Ga0163161_10002279 Ga0163161_100022792 373
21 3300048919 Ga0496116_0005779 Ga0496116_0005779_7401_8603 374
22 3300059421 Ga0590071_013601 Ga0590071_013601_621_1814 374
23 3300059426 Ga0590077_007104 Ga0590077_007104_182_1375 374
24 3300017792 Ga0163161_10017141 Ga0163161_100171416 375
25 3300031901 Ga0307406_10142140 Ga0307406_101421401 375
26 3300048919 Ga0496116_0019043 Ga0496116_0019043_2473_3660 376
27 3300048920 Ga0496117_0047178 Ga0496117_0047178_1302_2489 376
28 3300048925 Ga0496122_0008967 Ga0496122_0008967_7728_8915 376
29 3300048926 Ga0496123_0022639 Ga0496123_0022639_3126_4313 376
30 3300048927 Ga0496124_0029524 Ga0496124_0029524_2105_3292 376
31 3300053096 Ga0500641_0000061 Ga0500641_0000061_17696_18868 376
32 3300031995 Ga0307409_100050789 Ga0307409_1000507892 378
33 3300032005 Ga0307411_10074298 Ga0307411_100742982 378
34 3300049581 Ga0501047_0099233 Ga0501047_0099233_82_1227 378
35 3300015261 Ga0182006_1004430 Ga0182006_10044302 379
36 3300046453 Ga0495627_002466 Ga0495627_002466_204_1385 380
37 3300046522 Ga0495643_0008135 Ga0495643_0008135_4111_5298 380
38 3300048928 Ga0496125_0000213 Ga0496125_0000213_24452_25633 380
39 3300048929 Ga0496126_0034273 Ga0496126_0034273_567_1748 380
40 3300031911 Ga0307412_10136255 Ga0307412_101362552 381
41 3300048925 Ga0496122_0006375 Ga0496122_0006375_11107_12282 381
42 3300048926 Ga0496123_0049620 Ga0496123_0049620_924_2099 381
43 3300006038 Ga0075365_10175662 Ga0075365_101756621 382
44 3300030521 Ga0307511_10000971 Ga0307511_1000097119 382
45 3300050492 nmdc:mga0yw44_214444_c1 nmdc:mga0yw44_214444_c1_35_1213 382
46 3300053090 Ga0500646_0002934 Ga0500646_0002934_648_1811 382
47 3300053139 Ga0500568_0010696 Ga0500568_0010696_1585_2748 382
48 iso_pu_bacteria 2896344016 2896345564 382
49 iso_pu_bacteria 2890737413 2890739996 383
50 3300006186 Ga0075369_10041890 Ga0075369_100418902 384
51 3300006353 Ga0075370_10074423 Ga0075370_100744232 384
52 3300025924 Ga0207694_10152151 Ga0207694_101521512 384
53 3300048907 Ga0496104_0074600 Ga0496104_0074600_1775_2947 384
54 3300046455 Ga0495603_0004049 Ga0495603_0004049_6763_7974 388
55 3300046459 Ga0495629_0001253 Ga0495629_0001253_12007_13218 388
56 3300046471 Ga0495650_0003229 Ga0495650_0003229_33_1244 388
57 3300046530 Ga0495654_0053245 Ga0495654_0053245_289_1500 388
58 3300046543 Ga0495645_0000937 Ga0495645_0000937_11963_13174 388
59 3300046794 Ga0495589_0061707 Ga0495589_0061707_162_1373 388
60 3300047446 Ga0495679_032133 Ga0495679_032133_362_1573 388
61 3300047673 Ga0495593_0043824 Ga0495593_0043824_143_1354 388
62 3300048903 Ga0496100_0020163 Ga0496100_0020163_2173_3384 388
63 3300048904 Ga0496101_0038125 Ga0496101_0038125_464_1675 388
64 3300005545 Ga0070695_100069622 Ga0070695_1000696221 389
65 3300009174 Ga0105241_10015611 Ga0105241_100156112 389
66 3300010375 Ga0105239_10213756 Ga0105239_102137562 389
67 3300025949 Ga0207667_10019007 Ga0207667_100190074 389
68 iso_pu_bacteria 2721755487 2722729276 389
69 iso_pu_bacteria 2839989709 2839991056 389
70 iso_pu_bacteria 2896344016 2896344925 389
71 iso_pu_bacteria 2898713307 2898716448 389
72 iso_pu_bacteria 2902048731 2902052135 389
73 iso_pu_bacteria 2904780799 2904780952 389
74 iso_pu_bacteria 2919177583 2919180584 389
75 iso_pu_bacteria 3003233435 3003235705 389
76 iso_pu_bacteria 8055592153 8055592395 389
77 3300049575 Ga0501039_0052731 Ga0501039_0052731_215_1417 390
78 3300049577 Ga0501041_0005584 Ga0501041_0005584_4133_5335 390
79 3300049578 Ga0501042_0070051 Ga0501042_0070051_903_2105 390
80 3300049584 Ga0501068_0047665 Ga0501068_0047665_1184_2386 390
81 3300049587 Ga0501071_0020628 Ga0501071_0020628_1236_2438 390
82 3300049588 Ga0501072_0047406 Ga0501072_0047406_452_1654 390
83 3300049590 Ga0501074_0083047 Ga0501074_0083047_690_1892 390
84 3300049591 Ga0501075_0020083 Ga0501075_0020083_3287_4489 390
85 3300049592 Ga0501076_0109096 Ga0501076_0109096_1004_2206 390
86 3300049741 Ga0501079_0016778 Ga0501079_0016778_3287_4489 390
87 3300049743 Ga0501081_0018098 Ga0501081_0018098_2973_4175 390
88 3300049824 Ga0501045_0050678 Ga0501045_0050678_1207_2409 390
89 3300054114 Ga0501084_0004918 Ga0501084_0004918_4095_5297 390
90 3300060353 Ga0501082_0007375 Ga0501082_0007375_7434_8636 390
91 3300061734 Ga0530510_0014946 Ga0530510_0014946_3043_4245 390
92 iso_pu_bacteria 2929150217 2929152335 390
93 iso_pu_bacteria 2883291878 2883293602 391
94 iso_pu_bacteria 2883354860 2883357843 391
95 3300031852 Ga0307410_10196399 Ga0307410_101963991 392
96 iso_pu_bacteria 2896184354 2896186713 392
97 3300032004 Ga0307414_10023635 Ga0307414_100236351 393
98 3300032004 Ga0307414_10078002 Ga0307414_100780022 393
99 iso_pu_bacteria 2816332280 2817416167 393
100 iso_pu_bacteria 2921643360 2921649285 393
101 3300005289 Ga0065704_10002879 Ga0065704_100028793 394
102 3300005347 Ga0070668_100266513 Ga0070668_1002665131 394
103 3300009148 Ga0105243_10000012 Ga0105243_1000001271 394
104 3300013306 Ga0163162_10020114 Ga0163162_100201147 394
105 3300013308 Ga0157375_10198723 Ga0157375_101987231 394
106 3300025935 Ga0207709_10000006 Ga0207709_10000006672 394
107 3300046460 Ga0495638_0046801 Ga0495638_0046801_331_1542 394
108 3300046472 Ga0495580_0041001 Ga0495580_0041001_1525_2844 394
109 3300046474 Ga0495605_0001773 Ga0495605_0001773_10425_11636 394
110 3300046477 Ga0495664_0102964 Ga0495664_0102964_414_1625 394
111 3300046523 Ga0495644_0003054 Ga0495644_0003054_4041_5252 394
112 3300046528 Ga0495642_0080729 Ga0495642_0080729_52_1263 394
113 3300046691 Ga0495670_0071974 Ga0495670_0071974_251_1462 394
114 3300046694 Ga0495649_0016895 Ga0495649_0016895_2036_3259 394
115 3300046794 Ga0495589_0085323 Ga0495589_0085323_254_1465 394
116 3300047323 Ga0495683_0001463 Ga0495683_0001463_3577_4800 394
117 3300047443 Ga0495687_008661 Ga0495687_008661_564_1787 394
118 3300048905 Ga0496102_0055309 Ga0496102_0055309_2109_3320 394
119 iso_pu_bacteria 2821443989 2821449994 394
120 iso_pu_bacteria 8055301274 8055306875 394

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06965

Na_H_antiport_1

Na+/H+ antiporter 1

46

420

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
7a0y-assembly1.cif.gz_B structure of dimeric sodium proton antiporter nhaa k300r variant, at ph 8.2, crystallized with chimeric fab antibodies 0.9569 18 385
7a0w-assembly1.cif.gz_B structure of dimeric sodium proton antiporter nhaa, at ph 8.5, crystallized with chimeric fab antibodies 0.9544 18 385
4atv-assembly1.cif.gz_B structure of a triple mutant of the nhaa dimer, crystallised at low ph 0.9508 17 385
7a0y-assembly1.cif.gz_B structure of dimeric sodium proton antiporter nhaa k300r variant, at ph 8.2, crystallized with chimeric fab antibodies 0.942 18 385
7a0w-assembly1.cif.gz_B structure of dimeric sodium proton antiporter nhaa, at ph 8.5, crystallized with chimeric fab antibodies 0.9396 18 385
ID Description Score Start End Superfamily
4atvA00 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold;Na+/H+ antiporter like domain 0.9266 17 393 1.20.1530.10
4atvA00 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold;Na+/H+ antiporter like domain 0.9217 17 393 1.20.1530.10
af_Q9SA37_20_418_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.705 10 392 1.20.1530.20
af_Q9SA37_20_418_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.6859 10 392 1.20.1530.20
af_Q2FZQ4_1_398_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.6683 5 382 1.20.1530.20
ID Description Score Start End GO Terms
AF-A0A660DUY3-F1-model_v4 deleted 0.9803 79 386
AF-A0A4Q5UJF7-F1-model_v4 Na+/H+ antiporter NhaA 0.9801 69 388 GO:0005886
GO:0006885
GO:0015385
AF-A0A382YL60-F1-model_v4 Na+/H+ antiporter NhaA type 0.9765 65 230 GO:0005886
GO:0006885
GO:0015385
AF-F6INZ4-F1-model_v4 Na(+)/H(+) antiporter NhaA (Sodium/proton antiporter NhaA) 0.9763 14 387 GO:0005886
GO:0006885
GO:0015385
AF-J3CCD1-F1-model_v4 Na(+)/H(+) antiporter NhaA (Sodium/proton antiporter NhaA) 0.9748 30 394 GO:0005886
GO:0006885
GO:0015385

Feature Viewer

pLDDT pTM Quality
87.48 0.85 High
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Predicted Structure (AlphaFold2)

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