F098370

General Info

Members Datasets Scaffolds Average Seq Length
118 80 236 289

Family's Representative Sequence

Representative Sequence 3300042007|Ga0439449_0001177|Ga0439449_0001177_9121_10050
Length 303
Sequence MEPTITEGAWKGMTLPIITNKIGVIVDSFQVGVKEGLLKAKQVGADGVQMYAVHGELDPANLSSAARAQWKSYIESLGLEISALVGDLGGHGFQDPAENRAKIDKSKRIMELGMELGTNIITTHIGIVPSDPNSRVYETMHTACEELARFANDMNAYFAIETGPETAAHLKSFLDGLGTKGVAVNFDPANMVMVTGDDPVQGVYTLKDYIVHTHAKDGVKLGHIDPRDVYGDYGYEVSLDHDNIAAMAESGAAFREVPLGEGTVDWPAYLRALQEIGYNGYLTINPEADISKAVQFLKQYKAN

Samples

Sample ID Description Type Environment
1 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
4 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
5 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
6 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
7 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
8 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
9 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
10 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
11 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
12 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
13 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
14 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
15 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
16 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
17 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
18 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
19 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
20 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
21 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
22 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
23 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
24 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
25 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
26 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
27 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
28 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
29 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
30 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
31 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
32 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
33 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
34 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
35 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
36 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
37 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
38 2671180694 Paenibacillus sp. A3 Isolate Unclassified
39 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
40 2738541295 Bacillus sp. OK085 Isolate Unclassified
41 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
42 2818991459 Paenibacillus sp. 597 Isolate Unclassified
43 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
44 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
45 2857472729 Cohnella sp. R-74144 Isolate Unclassified
46 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
47 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
48 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
49 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
50 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
51 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
52 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
53 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
54 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
55 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
56 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
57 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
58 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
59 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
60 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
61 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
62 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
63 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
64 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
65 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
66 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
67 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
68 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
69 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
70 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
71 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
72 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
73 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
74 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
75 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
76 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
77 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
78 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified
79 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere
80 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 50
Metatranscriptomes 0
Isolates 50

Biome Distribution

Category Percentage (%)
Aerial Root 1.69
Bulb 0
Endosphere 14.41
Nodule 0.85
Rhizoplane 0.85
Rhizosphere 33.9
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0439449_0001177 3300042007 Bacteria 10248
2 JGI25151J46595_10005577 3300003187 Bacteria 6476
3 JGI25151J46595_10012408 3300003187 Bacteria 3878
4 Ga0055538_1000387 3300003751 Bacteria 17964
5 Ga0055535_1004045 3300003761 Bacteria 3773
6 Ga0055541_1000263 3300003841 Bacteria 18476
7 Ga0055541_1008487 3300003841 Bacteria 1633
8 Ga0105244_10095479 3300009036 Bacteria 1459
9 Ga0105246_10001009 3300011119 Bacteria 16168
10 Ga0105246_10093509 3300011119 Bacteria 2172
11 Ga0209784_100072 3300025224 Bacteria 149587
12 Ga0209566_100046 3300025225 Bacteria 247053
13 Ga0209566_100127 3300025225 Bacteria 94021
14 Ga0209566_100144 3300025225 Bacteria 83705
15 Ga0209437_101273 3300025233 Bacteria 6836
16 Ga0209258_102756 3300025242 Bacteria 4262
17 Ga0209675_1022693 3300025291 Bacteria 1642
18 Ga0209025_1003271 3300025294 Bacteria 15605
19 Ga0209025_1007215 3300025294 Bacteria 8367
20 Ga0209025_1007321 3300025294 Bacteria 8271
21 Ga0209025_1038872 3300025294 Bacteria 2085
22 Ga0395899_0046179 3300037312 Bacteria 3244
23 Ga0451795_0629458 3300041456 Bacteria 2045
24 Ga0439449_0003062 3300042007 Bacteria 6514
25 Ga0439462_0000474 3300042015 Bacteria 7882
26 Ga0466969_0003819 3300044656 Bacteria 8000
27 Ga0466959_0072460 3300045049 Bacteria 2493
28 Ga0495661_0050010 3300046665 Bacteria 2533
29 Ga0495660_0013098 3300046810 Bacteria 4807
30 Ga0495681_0154041 3300047470 Bacteria 962
31 Ga0496116_0002445 3300048919 Bacteria 19544
32 Ga0496116_0002935 3300048919 Bacteria 17392
33 Ga0496116_0025992 3300048919 Bacteria 4291
34 Ga0496116_0050556 3300048919 Bacteria 2769
35 Ga0496119_0171099 3300048922 Bacteria 1147
36 Ga0496121_0168356 3300048924 Bacteria 1595
37 Ga0496122_0000793 3300048925 Bacteria 60637
38 Ga0496122_0005016 3300048925 Bacteria 16013
39 Ga0496122_0005348 3300048925 Bacteria 15342
40 Ga0496122_0016629 3300048925 Bacteria 6941
41 Ga0496122_0026325 3300048925 Bacteria 5018
42 Ga0496122_0028299 3300048925 Bacteria 4761
43 Ga0496122_0128069 3300048925 Bacteria 1620
44 Ga0496122_0255221 3300048925 Bacteria 977
45 Ga0496122_0328368 3300048925 Bacteria 809
46 Ga0496123_0001495 3300048926 Bacteria 32454
47 Ga0496123_0006524 3300048926 Bacteria 11271
48 Ga0496123_0022324 3300048926 Bacteria 4882
49 Ga0496124_0000257 3300048927 Bacteria 102026
50 Ga0496124_0001228 3300048927 Bacteria 39539
51 Ga0496124_0006563 3300048927 Bacteria 12647
52 Ga0496124_0017852 3300048927 Bacteria 6670
53 Ga0496124_0070230 3300048927 Bacteria 2906
54 Ga0496124_0138883 3300048927 Bacteria 1920
55 Ga0496124_0241830 3300048927 Bacteria 1342
56 Ga0496125_0001484 3300048928 Bacteria 33846
57 Ga0496125_0005603 3300048928 Bacteria 13863
58 Ga0496125_0021447 3300048928 Bacteria 6026
59 Ga0496126_0001459 3300048929 Bacteria 36892
60 2512735990 2512564039 Bacteria 8739048
61 2524186510 2524023129 Bacteria 6762600
62 2550899231 2548877040 Bacteria 7507281
63 2563930355 2563366752 Bacteria 4961801
64 2571530323 2571042143 Bacteria 6986194
65 2587738417 2585428059 Bacteria 8696589
66 2595320758 2593339198 Bacteria 7267884
67 2644427070 2643221676 Bacteria 8119172
68 2673818422 2671180694 Bacteria 7506943
69 2673823262 2671180694 Bacteria 7506943
70 2728533623 2728368933 Bacteria 7044283
71 2738814985 2738541295 Bacteria 5730091
72 2793184950 2791355222 Bacteria 5898266
73 2793185801 2791355222 Bacteria 5898266
74 2819669473 2818991459 Bacteria 8736032
75 2821117951 2821111986 Bacteria 6894338
76 2857453562 2857453340 Bacteria 8090534
77 2857474961 2857472729 Bacteria 6568124
78 2857476552 2857472729 Bacteria 6568124
79 2864737342 2864733723 Bacteria 6770668
80 2865005200 2865002811 Bacteria 6333767
81 2885529051 2885526491 Bacteria 7164189
82 2888579516 2888578766 Bacteria 6743310
83 2888580274 2888578766 Bacteria 6743310
84 2889042692 2889042446 Bacteria 7618936
85 2889051861 2889049205 Bacteria 7524325
86 2889054020 2889049205 Bacteria 7524325
87 2904116123 2904113452 Bacteria 7796941
88 2904118001 2904113452 Bacteria 7796941
89 2904167231 2904162308 Bacteria 7086713
90 2904496498 2904490793 Bacteria 7046938
91 2904760370 2904755435 Bacteria 7986759
92 2904761812 2904755435 Bacteria 7986759
93 2907202617 2907202186 Bacteria 6632024
94 2919165637 2919160200 Bacteria 6929020
95 2919429683 2919425241 Bacteria 8055701
96 2925326416 2925326138 Bacteria 9652120
97 2925330392 2925326138 Bacteria 9652120
98 2929210169 2929206907 Bacteria 5918291
99 2931386117 2931384279 Bacteria 7299545
100 2938654648 2938649242 Bacteria 7118381
101 2939684102 2939679117 Bacteria 6921672
102 2945995272 2945991243 Bacteria 7008369
103 2946057979 2946053406 Bacteria 6978655
104 2968558679 2968558590 Bacteria 6956864
105 2971416061 2971410472 Bacteria 8311090
106 2980185431 2980182181 Bacteria 9454109
107 2984528083 2984527788 Bacteria 5288478
108 2984534191 2984532647 Bacteria 5288506
109 2988227333 2988225383 Bacteria 7221625
110 2996638711 2996632988 Bacteria 6921523
111 8002317553 8002317523 Bacteria 8051857
112 8046995173 8046991243 Bacteria 8497463
113 8054471813 8054465665 Bacteria 7323556
114 8054799468 8054795415 Bacteria 9785225
115 8055635800 8055632911 Bacteria 5283357
116 8057475011 8057473075 Bacteria 5892720
117 8057734581 8057733483 Bacteria 6578323
118 8057977426 8057977335 Bacteria 5694872
119 Ga0439449_0001177
120 JGI25151J46595_10005577
121 JGI25151J46595_10012408
122 Ga0055538_1000387
123 Ga0055535_1004045
124 Ga0055541_1000263
125 Ga0055541_1008487
126 Ga0105244_10095479
127 Ga0105246_10001009
128 Ga0105246_10093509
129 Ga0209784_100072
130 Ga0209566_100046
131 Ga0209566_100127
132 Ga0209566_100144
133 Ga0209437_101273
134 Ga0209258_102756
135 Ga0209675_1022693
136 Ga0209025_1003271
137 Ga0209025_1007215
138 Ga0209025_1007321
139 Ga0209025_1038872
140 Ga0395899_0046179
141 Ga0451795_0629458
142 Ga0439449_0003062
143 Ga0439462_0000474
144 Ga0466969_0003819
145 Ga0466959_0072460
146 Ga0495661_0050010
147 Ga0495660_0013098
148 Ga0495681_0154041
149 Ga0496116_0002445
150 Ga0496116_0002935
151 Ga0496116_0025992
152 Ga0496116_0050556
153 Ga0496119_0171099
154 Ga0496121_0168356
155 Ga0496122_0000793
156 Ga0496122_0005016
157 Ga0496122_0005348
158 Ga0496122_0016629
159 Ga0496122_0026325
160 Ga0496122_0028299
161 Ga0496122_0128069
162 Ga0496122_0255221
163 Ga0496122_0328368
164 Ga0496123_0001495
165 Ga0496123_0006524
166 Ga0496123_0022324
167 Ga0496124_0000257
168 Ga0496124_0001228
169 Ga0496124_0006563
170 Ga0496124_0017852
171 Ga0496124_0070230
172 Ga0496124_0138883
173 Ga0496124_0241830
174 Ga0496125_0001484
175 Ga0496125_0005603
176 Ga0496125_0021447
177 Ga0496126_0001459
178 2512735990
179 2524186510
180 2550899231
181 2563930355
182 2571530323
183 2587738417
184 2595320758
185 2644427070
186 2673818422
187 2673823262
188 2728533623
189 2738814985
190 2793184950
191 2793185801
192 2819669473
193 2821117951
194 2857453562
195 2857474961
196 2857476552
197 2864737342
198 2865005200
199 2885529051
200 2888579516
201 2888580274
202 2889042692
203 2889051861
204 2889054020
205 2904116123
206 2904118001
207 2904167231
208 2904496498
209 2904760370
210 2904761812
211 2907202617
212 2919165637
213 2919429683
214 2925326416
215 2925330392
216 2929210169
217 2931386117
218 2938654648
219 2939684102
220 2945995272
221 2946057979
222 2968558679
223 2971416061
224 2980185431
225 2984528083
226 2984534191
227 2988227333
228 2996638711
229 8002317553
230 8046995173
231 8054471813
232 8054799468
233 8055635800
234 8057475011
235 8057734581
236 8057977426

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01261

AP_endonuc_2

Xylose isomerase-like TIM barrel

37

300

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tva-assembly2.cif.gz_B crystal structure of xylose isomerase domain protein from planctomyces limnophilus 0.8345 6 290
3tva-assembly1.cif.gz_A crystal structure of xylose isomerase domain protein from planctomyces limnophilus 0.8196 6 290
3tva-assembly2.cif.gz_B crystal structure of xylose isomerase domain protein from planctomyces limnophilus 0.8031 6 290
3tva-assembly1.cif.gz_A crystal structure of xylose isomerase domain protein from planctomyces limnophilus 0.7951 6 290
3cqj-assembly1.cif.gz_B crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b) complex with zn2+ 0.7883 5 289
ID Description Score Start End Superfamily
3tvaB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8136 6 290 3.20.20.150
af_P45541_1_270_3.20.20.150 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8053 7 288 3.20.20.150
af_P45541_1_270_3.20.20.150 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.7971 7 288 3.20.20.150
3wqoA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.7942 5 289 3.20.20.150
2zdsA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.7846 5 289 3.20.20.150
ID Description Score Start End GO Terms
AF-A0A559KA27-F1-model_v4 Sugar phosphate isomerase/epimerase 0.9897 1 290 GO:0016853
AF-A0A5Q2TP75-F1-model_v4 TIM barrel protein 0.9865 4 288
AF-A0A559KA27-F1-model_v4 Sugar phosphate isomerase/epimerase 0.9863 1 290 GO:0016853
AF-A0A358M5T5-F1-model_v4 Xylose isomerase 0.9801 35 175 GO:0016853
AF-A0A7V4M001-F1-model_v4 Sugar phosphate isomerase/epimerase 0.9801 5 73

Map