F088190

General Info

Members Datasets Scaffolds Average Seq Length
116 83 232 484

Family's Representative Sequence

Representative Sequence 3300010375|Ga0105239_10000117|Ga0105239_1000011742
Length 520
Sequence MTNTFFISIILYKSIGLLGYICMPIFIKTTAQMLPYKSLILVERNAAVALHIQVCNSFIALITNGTLQPADILPSSRILADLIGINRNTVKLAYEELISQGWAESMERKGVFVLSKLPIRRSKTVLPEEEKNNTSKESFSWKKLGKTAPNENLQQQTMLAIDDGFPDVRLAPVDVLMREYRSLSRRFHGRNFLKYGSAMGSEHLRHSICNYLSHSRGLIVAAENILITKGSQMGIYLAAQLLLNNGDNIAVGISNYSSADETFKYAGANLLRISVDDNGMDVDELEVVLQHKKIKAVYIIPHHHFPTTVTMSMERRLKLLNLAREYHFAIIEDDYDFDFHYDNKPYLPLAGIDHNHNVIYIGSISKTFAPALRIGFMTGPVAFVEAGASLRQLIDKQGDTLLEEAFAVLFDDGEMERHFRKSLKIYKQRRNLFCDILQSDFKNVIQFKIPEGGLGVWTVFDEKIDMTKMSQEASKKGLYIGNGSFYKNESFAANALRMGFASLKENEMIEALGILKTIIR

Samples

Sample ID Description Type Environment
1 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
7 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
8 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
9 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
14 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
15 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
16 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
17 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
18 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
19 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
20 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
21 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
22 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
23 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
24 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
25 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
26 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
27 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
28 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
29 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
39 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
40 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
41 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
42 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
43 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
44 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
45 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
46 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
47 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
48 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
49 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
50 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
51 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
52 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
53 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
54 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
55 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
56 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
57 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
58 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
59 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
60 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
61 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
62 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
63 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
64 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
65 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
66 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
67 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
68 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
69 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
70 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
71 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
72 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
73 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
74 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
75 2905999023 Chryseobacterium elymi KCTC 22547 Isolate Rhizosphere
76 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
77 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
78 2919399522 Chryseobacterium sp. 2987 Isolate Unclassified
79 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
80 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
81 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
82 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified
83 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 75.86
Metatranscriptomes 0
Isolates 24.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.1
Nodule 0
Rhizoplane 1.72
Rhizosphere 63.79
Stem 0
Stem Tuber 0
Unclassified 1.72

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105239_10000117 3300010375 Bacteria 112291
2 JGI24740J21852_10002037 3300001979 Bacteria 9242
3 JGI25162J39368_1000012 3300002737 Bacteria 373191
4 JGI25154J39366_1000041 3300002738 Bacteria 144221
5 JGI25153J46596_10003472 3300003215 Bacteria 8825
6 JGI25160J50197_1001414 3300003354 Bacteria 12029
7 Ga0055531_10000104 3300003794 Bacteria 92278
8 Ga0065165_1026764 3300005262 Bacteria 1892
9 Ga0065714_10003260 3300005288 Bacteria 14542
10 Ga0065714_10088644 3300005288 Bacteria 2009
11 Ga0070679_100000415 3300005530 Bacteria 36278
12 Ga0068853_100040523 3300005539 Bacteria 3974
13 Ga0068853_100130029 3300005539 Bacteria 2253
14 Ga0068855_100017759 3300005563 Bacteria 8552
15 Ga0068855_100056221 3300005563 Bacteria 4618
16 Ga0070712_100079195 3300006175 Unclassified 2374
17 Ga0105244_10000004 3300009036 Bacteria 492478
18 Ga0105240_10003959 3300009093 Bacteria 22879
19 Ga0105237_10015495 3300009545 Bacteria 7931
20 Ga0105238_10028336 3300009551 Bacteria 5707
21 Ga0105239_10000006 3300010375 Bacteria 442319
22 Ga0105239_10022305 3300010375 Bacteria 6980
23 Ga0105239_10022433 3300010375 Bacteria 6959
24 Ga0105239_10047329 3300010375 Bacteria 4714
25 Ga0157373_10002593 3300013100 Bacteria 13729
26 Ga0182006_1008371 3300015261 Bacteria 4686
27 Ga0163161_10000026 3300017792 Bacteria 199745
28 Ga0163161_10040017 3300017792 Bacteria 3366
29 Ga0209437_100041 3300025233 Bacteria 444465
30 Ga0209646_1000122 3300025246 Bacteria 144486
31 Ga0209026_1000329 3300025250 Bacteria 47539
32 Ga0209673_1009305 3300025273 Bacteria 4276
33 Ga0209564_1008257 3300025295 Bacteria 5179
34 Ga0209758_1005260 3300025297 Bacteria 10124
35 Ga0209758_1015891 3300025297 Bacteria 3865
36 Ga0207426_1000578 3300025302 Bacteria 49071
37 Ga0207426_1001512 3300025302 Bacteria 18977
38 Ga0209257_1000013 3300025304 Bacteria 1047305
39 Ga0207655_1000008 3300025728 Bacteria 734289
40 Ga0207647_10055343 3300025904 Bacteria 2438
41 Ga0207695_10007718 3300025913 Bacteria 13624
42 Ga0207671_10010161 3300025914 Bacteria 7795
43 Ga0207693_10185906 3300025915 Bacteria 1636
44 Ga0207652_10000016 3300025921 Bacteria 188815
45 Ga0207694_10131259 3300025924 Bacteria 2008
46 Ga0207667_10086441 3300025949 Bacteria 3245
47 Ga0207639_10052612 3300026041 Bacteria 3104
48 Ga0307517_10011361 3300028786 Bacteria 12349
49 Ga0307414_10000092 3300032004 Bacteria 72333
50 Ga0307414_10000436 3300032004 Bacteria 22096
51 Ga0307414_10001092 3300032004 Bacteria 13853
52 Ga0307414_10001128 3300032004 Bacteria 13663
53 Ga0307411_10000001 3300032005 Bacteria 931810
54 Ga0451793_0206971 3300041452 Bacteria 2532
55 Ga0439445_0000001 3300042004 Bacteria 97032
56 Ga0439445_0000039 3300042004 Bacteria 17900
57 Ga0495627_029972 3300046453 Bacteria 1727
58 Ga0495650_0000225 3300046471 Bacteria 117898
59 Ga0495606_0000074 3300046507 Bacteria 170848
60 Ga0495606_0003654 3300046507 Bacteria 16121
61 Ga0495606_0006049 3300046507 Bacteria 11319
62 Ga0495606_0013325 3300046507 Bacteria 6508
63 Ga0495606_0056135 3300046507 Bacteria 2543
64 Ga0495610_0000074 3300046512 Bacteria 120043
65 Ga0495616_0001664 3300046513 Bacteria 15204
66 Ga0495616_0006838 3300046513 Bacteria 6870
67 Ga0495643_0034893 3300046522 Bacteria 2772
68 Ga0495625_0000067 3300046660 Bacteria 171483
69 Ga0495661_0002197 3300046665 Bacteria 15214
70 Ga0495649_0000054 3300046694 Bacteria 107048
71 Ga0495660_0013839 3300046810 Bacteria 4676
72 Ga0495686_0000249 3300047472 Bacteria 96604
73 Ga0495686_0000386 3300047472 Bacteria 70225
74 Ga0495686_0001554 3300047472 Bacteria 24493
75 Ga0495686_0033457 3300047472 Bacteria 3319
76 Ga0495686_0089871 3300047472 Bacteria 1866
77 Ga0496115_0001889 3300048918 Bacteria 14991
78 Ga0496122_0000459 3300048925 Bacteria 84782
79 Ga0496122_0000465 3300048925 Bacteria 84396
80 Ga0495678_002316 3300049459 Bacteria 13126
81 Ga0500651_0000962 3300053093 Bacteria 14158
82 Ga0500568_0032713 3300053139 Unclassified 2137
83 Ga0500616_0000004 3300053153 Bacteria 1002714
84 Ga0500622_0000075 3300053156 Bacteria 109513
85 Ga0500622_0000086 3300053156 Bacteria 99366
86 Ga0500622_0000738 3300053156 Bacteria 28522
87 Ga0500622_0001279 3300053156 Bacteria 20471
88 Ga0500627_0015324 3300053158 Bacteria 2960
89 2585141408 2582581278 Bacteria 5296881
90 2587749436 2585428060 Bacteria 5304711
91 2587749940 2585428060 Bacteria 5304711
92 2588446597 2588253712 Bacteria 5403181
93 2588446902 2588253712 Bacteria 5403181
94 2590609248 2588254257 Bacteria 5436094
95 2590612088 2588254257 Bacteria 5436094
96 2644008426 2643221600 Bacteria 5530138
97 2644011256 2643221600 Bacteria 5530138
98 2738732062 2738541279 Bacteria 6149495
99 2738764627 2738541285 Bacteria 6150075
100 2739213642 2738543007 Bacteria 6149845
101 2740057778 2739367874 Bacteria 4872888
102 2740057841 2739367874 Bacteria 4872888
103 2765572805 2765235839 Bacteria 5314748
104 2857618307 2857618242 Bacteria 5635925
105 2890738226 2890737413 Bacteria 4269751
106 2896115215 2896109856 Bacteria 7140722
107 2906003248 2905999023 Bacteria 4591259
108 2919191386 2919186247 Bacteria 6244071
109 2919193790 2919191525 Bacteria 5765973
110 2919195517 2919191525 Bacteria 5765973
111 2919404177 2919399522 Bacteria 5164947
112 2929241157 2929239360 Bacteria 7745570
113 2929925272 2929921140 Bacteria 8649150
114 2939669695 2939664404 Bacteria 6364494
115 8003154232 8003151029 Bacteria 8187759
116 8055589174 8055588893 Bacteria 3619545
117 Ga0105239_10000117
118 JGI24740J21852_10002037
119 JGI25162J39368_1000012
120 JGI25154J39366_1000041
121 JGI25153J46596_10003472
122 JGI25160J50197_1001414
123 Ga0055531_10000104
124 Ga0065165_1026764
125 Ga0065714_10003260
126 Ga0065714_10088644
127 Ga0070679_100000415
128 Ga0068853_100040523
129 Ga0068853_100130029
130 Ga0068855_100017759
131 Ga0068855_100056221
132 Ga0070712_100079195
133 Ga0105244_10000004
134 Ga0105240_10003959
135 Ga0105237_10015495
136 Ga0105238_10028336
137 Ga0105239_10000006
138 Ga0105239_10022305
139 Ga0105239_10022433
140 Ga0105239_10047329
141 Ga0157373_10002593
142 Ga0182006_1008371
143 Ga0163161_10000026
144 Ga0163161_10040017
145 Ga0209437_100041
146 Ga0209646_1000122
147 Ga0209026_1000329
148 Ga0209673_1009305
149 Ga0209564_1008257
150 Ga0209758_1005260
151 Ga0209758_1015891
152 Ga0207426_1000578
153 Ga0207426_1001512
154 Ga0209257_1000013
155 Ga0207655_1000008
156 Ga0207647_10055343
157 Ga0207695_10007718
158 Ga0207671_10010161
159 Ga0207693_10185906
160 Ga0207652_10000016
161 Ga0207694_10131259
162 Ga0207667_10086441
163 Ga0207639_10052612
164 Ga0307517_10011361
165 Ga0307414_10000092
166 Ga0307414_10000436
167 Ga0307414_10001092
168 Ga0307414_10001128
169 Ga0307411_10000001
170 Ga0451793_0206971
171 Ga0439445_0000001
172 Ga0439445_0000039
173 Ga0495627_029972
174 Ga0495650_0000225
175 Ga0495606_0000074
176 Ga0495606_0003654
177 Ga0495606_0006049
178 Ga0495606_0013325
179 Ga0495606_0056135
180 Ga0495610_0000074
181 Ga0495616_0001664
182 Ga0495616_0006838
183 Ga0495643_0034893
184 Ga0495625_0000067
185 Ga0495661_0002197
186 Ga0495649_0000054
187 Ga0495660_0013839
188 Ga0495686_0000249
189 Ga0495686_0000386
190 Ga0495686_0001554
191 Ga0495686_0033457
192 Ga0495686_0089871
193 Ga0496115_0001889
194 Ga0496122_0000459
195 Ga0496122_0000465
196 Ga0495678_002316
197 Ga0500651_0000962
198 Ga0500568_0032713
199 Ga0500616_0000004
200 Ga0500622_0000075
201 Ga0500622_0000086
202 Ga0500622_0000738
203 Ga0500622_0001279
204 Ga0500627_0015324
205 2585141408
206 2587749436
207 2587749940
208 2588446597
209 2588446902
210 2590609248
211 2590612088
212 2644008426
213 2644011256
214 2738732062
215 2738764627
216 2739213642
217 2740057778
218 2740057841
219 2765572805
220 2857618307
221 2890738226
222 2896115215
223 2906003248
224 2919191386
225 2919193790
226 2919195517
227 2919404177
228 2929241157
229 2929925272
230 2939669695
231 8003154232
232 8055589174

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00392

GntR

Bacterial regulatory proteins, gntR family

52

113

0.95

PF00155

Aminotran_1_2

Aminotransferase class I and II

165

515

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
2wv0-assembly4.cif.gz_G-2 crystal structure of the gntr-hutc family member yvoa from bacillus subtilis 0.9626 9 82
7pq9-assembly7.cif.gz_KKK crystal structure of bacillus clausii pdxr at 2.8 angstroms resolution 0.96 9 83
2wv0-assembly5.cif.gz_I crystal structure of the gntr-hutc family member yvoa from bacillus subtilis 0.9571 9 82
2wv0-assembly3.cif.gz_E crystal structure of the gntr-hutc family member yvoa from bacillus subtilis 0.956 10 82
2ek5-assembly4.cif.gz_C crystal structure of the transcriptional factor from c.glutamicum at 2.2 angstrom resolution 0.9531 16 83
ID Description Score Start End Superfamily
af_P39389_1_70_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9828 19 82 1.10.10.10
af_Q2FWW6_10_126_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9827 15 82 1.10.10.10
af_Q2G1P1_1_44_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.974 39 81 1.10.10.10
4hamA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9683 9 82 1.10.10.10
2wv0D01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.968 16 82 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7V9N4D0-F1-model_v4 GntR family transcriptional regulator 0.9899 8 82 GO:0003677
GO:0003700
GO:0045892
AF-A0A4U8Q2L2-F1-model_v4 HTH-type transcriptional repressor YtrA 0.9893 8 82 GO:0003677
GO:0003700
AF-A0A291E0I5-F1-model_v4 GntR family transcriptional regulator (HTH-type transcriptional repressor yvoA) 0.9866 5 82 GO:0003677
GO:0003700
GO:0045892
AF-A0A1S2IXJ0-F1-model_v4 HTH gntR-type domain-containing protein 0.985 8 82 GO:0003677
GO:0003700
AF-A0A7X8C4W4-F1-model_v4 GntR family transcriptional regulator 0.9844 8 84 GO:0003677
GO:0003700

Map