F073054

General Info

Members Datasets Scaffolds Average Seq Length
113 71 226 461

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100029698|Ga0068855_1000296983
Length 500
Sequence MDFVNSSPREIASKIVAELQSAGFAAFWVGGCVRDFLLGREPQDFDIATDAKPEQVEKLFPKTIPVGKKFGVIIVVEGGQQFQVATFRAEADYQDGRRPEKVVFANAKADASRRDFTVNGLFYDPLAQKIHDWVGGEKDLRAKIICTIGKPEERFGEDHLRMLRAVRFAARLGFEIEPETFAAIRALAPKIKIISAERVRDELLKLFAPPVGATTALTPALSPRERGNVKAVVVDRAFQDIAQRGNEKLPLLGERVGVRADNLKLYSPAARGLVLLRDSGLLEHILPELTATVNCEQSPDYHPEGSVFNHLCLMLKNLPANAPESLPWAVLLHDIAKPVTAERDPTTGKIHFYGHEKIGADMAETILRRLKFSNQQIEEIVACVRNHMQFKDVKQMRKATLRRLLLRETFPLELELHRLDCLGSSGDLEHYHFLLEQAEELKHLPAIRPPLLTGNDLMELGMTAGPAVGAMLHEVRERQLQDELKTPAEARAWVKANLAK

Samples

Sample ID Description Type Environment
1 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
8 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
9 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
10 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
11 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
12 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
13 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
14 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
15 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
17 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
18 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
19 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
20 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
21 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
22 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
23 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
24 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
25 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
26 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
27 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
28 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
29 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
30 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
31 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
32 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
33 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
34 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
35 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
36 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
37 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
38 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
39 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
40 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
41 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
42 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
43 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
44 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
45 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
46 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
47 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
48 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
49 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
50 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
51 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
52 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
53 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
54 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
55 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
56 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
57 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
58 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
59 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
60 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
61 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
62 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
63 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
64 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
65 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
66 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
67 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
68 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
69 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
70 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
71 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.77
Nodule 0
Rhizoplane 0
Rhizosphere 96.46
Stem 0
Stem Tuber 0
Unclassified 14.16

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068855_100029698 3300005563 Bacteria 6536
2 rootH2_10137290 3300003320 Unclassified 4028
3 rootH1_10205199 3300003323 Unclassified 3613
4 Ga0070680_100132835 3300005336 Unclassified 2083
5 Ga0070689_100055005 3300005340 Unclassified 3082
6 Ga0070711_100003213 3300005439 Bacteria 9489
7 Ga0070684_100079484 3300005535 Bacteria 2899
8 Ga0068856_100000102 3300005614 Bacteria 82381
9 Ga0068859_100005655 3300005617 Bacteria 12725
10 Ga0097620_100005655 3300006931 Bacteria 12725
11 Ga0105240_10004056 3300009093 Bacteria 22532
12 Ga0105245_10051536 3300009098 Unclassified 3689
13 Ga0157370_10125282 3300013104 Bacteria 2398
14 Ga0207695_10006192 3300025913 Bacteria 15594
15 Ga0207670_10021665 3300025936 Bacteria 3969
16 Ga0207667_10065553 3300025949 Bacteria 3787
17 Ga0207702_10011578 3300026078 Bacteria 7350
18 Ga0207702_10032634 3300026078 Bacteria 4344
19 Ga0265337_1000023 3300028556 Bacteria 72895
20 Ga0265337_1002135 3300028556 Bacteria 9317
21 Ga0265337_1004783 3300028556 Bacteria 5546
22 Ga0265337_1006687 3300028556 Bacteria 4403
23 Ga0265337_1017485 3300028556 Unclassified 2299
24 Ga0265337_1022772 3300028556 Unclassified 1936
25 Ga0265319_1000027 3300028563 Bacteria 139786
26 Ga0265319_1006066 3300028563 Bacteria 5664
27 Ga0265319_1011403 3300028563 Bacteria 3641
28 Ga0265318_10048571 3300028577 Unclassified 1598
29 Ga0265323_10000043 3300028653 Bacteria 69334
30 Ga0265323_10014190 3300028653 Unclassified 3162
31 Ga0265338_10000032 3300028800 Bacteria 257580
32 Ga0265338_10000041 3300028800 Bacteria 230676
33 Ga0265338_10000243 3300028800 Bacteria 100885
34 Ga0265338_10001806 3300028800 Bacteria 33663
35 Ga0265338_10002287 3300028800 Bacteria 29181
36 Ga0265338_10003847 3300028800 Bacteria 20833
37 Ga0265338_10008969 3300028800 Bacteria 12030
38 Ga0265338_10016134 3300028800 Bacteria 8149
39 Ga0265338_10025670 3300028800 Bacteria 5971
40 Ga0265338_10045182 3300028800 Bacteria 4054
41 Ga0265338_10056129 3300028800 Bacteria 3496
42 Ga0265338_10073834 3300028800 Unclassified 2905
43 Ga0265338_10091429 3300028800 Unclassified 2514
44 Ga0265338_10132473 3300028800 Bacteria 1965
45 Ga0265324_10000187 3300029957 Bacteria 47589
46 Ga0265324_10022476 3300029957 Bacteria 2253
47 Ga0265320_10004268 3300031240 Bacteria 9394
48 Ga0265320_10006133 3300031240 Bacteria 7611
49 Ga0265320_10012486 3300031240 Unclassified 4939
50 Ga0265320_10029226 3300031240 Bacteria 2853
51 Ga0265340_10006218 3300031247 Bacteria 6580
52 Ga0265340_10010610 3300031247 Bacteria 4926
53 Ga0265340_10052009 3300031247 Unclassified 1982
54 Ga0265327_10000571 3300031251 Bacteria 62622
55 Ga0265327_10009107 3300031251 Bacteria 7233
56 Ga0265316_10078318 3300031344 Bacteria 2537
57 Ga0265313_10008978 3300031595 Bacteria 6556
58 Ga0265313_10017750 3300031595 Unclassified 4026
59 Ga0265342_10033718 3300031712 Bacteria 3145
60 Ga0373930_0000139 3300034816 Bacteria 8118
61 Ga0373928_0000409 3300035084 Bacteria 8552
62 Ga0373929_0000824 3300035085 Bacteria 6049
63 Ga0373949_0001294 3300035090 Bacteria 7263
64 Ga0373932_0000001 3300035112 Bacteria 1459067
65 Ga0373954_0008747 3300035118 Bacteria 4451
66 Ga0373956_0001755 3300035119 Bacteria 8933
67 Ga0373946_0012614 3300035171 Bacteria 3167
68 Ga0373931_0000004 3300035691 Bacteria 535140
69 Ga0373927_0007984 3300035695 Bacteria 7147
70 Ga0373927_0030567 3300035695 Bacteria 3513
71 Ga0373933_0023299 3300035724 Bacteria 3536
72 Ga0373947_0019794 3300035725 Bacteria 3884
73 Ga0373937_0041444 3300036401 Bacteria 4199
74 Ga0373925_0018374 3300037068 Bacteria 5082
75 Ga0451577_0006645 3300042876 Bacteria 11484
76 Ga0453684_0002419 3300044712 Bacteria 45391
77 Ga0451576_0058848 3300045051 Bacteria 4013
78 Ga0451576_0102783 3300045051 Bacteria 2973
79 Ga0495592_0000151 3300046454 Bacteria 60491
80 Ga0495629_0018644 3300046459 Bacteria 4961
81 Ga0495662_0014269 3300046476 Bacteria 3864
82 Ga0495662_0046567 3300046476 Bacteria 2094
83 Ga0495618_0001287 3300046514 Bacteria 16938
84 Ga0495618_0021853 3300046514 Bacteria 3947
85 Ga0495628_0000092 3300046516 Bacteria 71184
86 Ga0495630_0000049 3300046517 Bacteria 97884
87 Ga0495630_0007909 3300046517 Bacteria 7625
88 Ga0495666_0020526 3300046526 Bacteria 3272
89 Ga0495640_0096949 3300046533 Bacteria 1939
90 Ga0495640_0097989 3300046533 Bacteria 1927
91 Ga0495586_0000185 3300046535 Bacteria 41119
92 Ga0495586_0006199 3300046535 Bacteria 6393
93 Ga0495586_0007946 3300046535 Bacteria 5658
94 Ga0495586_0062388 3300046535 Bacteria 2029
95 Ga0495645_0002195 3300046543 Bacteria 13266
96 Ga0495645_0094084 3300046543 Bacteria 2138
97 Ga0495667_0013710 3300046559 Bacteria 5478
98 Ga0495634_0001900 3300046642 Bacteria 17915
99 Ga0495634_0007604 3300046642 Bacteria 8118
100 Ga0495599_0018907 3300046678 Bacteria 4295
101 Ga0495647_0015575 3300046681 Bacteria 2666
102 Ga0495581_0040767 3300047315 Bacteria 2686
103 Ga0495674_0001188 3300047319 Bacteria 25172
104 Ga0495674_0013246 3300047319 Bacteria 7753
105 Ga0495676_0016796 3300047321 Bacteria 6483
106 Ga0495680_0005485 3300047322 Bacteria 11925
107 Ga0495684_0093435 3300047471 Bacteria 2278
108 Ga0501032_0039276 3300049569 Bacteria 3220
109 Ga0501033_0036513 3300049570 Unclassified 3682
110 Ga0501035_0043940 3300049822 Bacteria 4025
111 Ga0501044_0007688 3300049823 Bacteria 11851
112 Ga0500650_0006512 3300053098 Bacteria 4468
113 Ga0500636_0115037 3300053177 Unclassified 1515
114 Ga0068855_100029698
115 rootH2_10137290
116 rootH1_10205199
117 Ga0070680_100132835
118 Ga0070689_100055005
119 Ga0070711_100003213
120 Ga0070684_100079484
121 Ga0068856_100000102
122 Ga0068859_100005655
123 Ga0097620_100005655
124 Ga0105240_10004056
125 Ga0105245_10051536
126 Ga0157370_10125282
127 Ga0207695_10006192
128 Ga0207670_10021665
129 Ga0207667_10065553
130 Ga0207702_10011578
131 Ga0207702_10032634
132 Ga0265337_1000023
133 Ga0265337_1002135
134 Ga0265337_1004783
135 Ga0265337_1006687
136 Ga0265337_1017485
137 Ga0265337_1022772
138 Ga0265319_1000027
139 Ga0265319_1006066
140 Ga0265319_1011403
141 Ga0265318_10048571
142 Ga0265323_10000043
143 Ga0265323_10014190
144 Ga0265338_10000032
145 Ga0265338_10000041
146 Ga0265338_10000243
147 Ga0265338_10001806
148 Ga0265338_10002287
149 Ga0265338_10003847
150 Ga0265338_10008969
151 Ga0265338_10016134
152 Ga0265338_10025670
153 Ga0265338_10045182
154 Ga0265338_10056129
155 Ga0265338_10073834
156 Ga0265338_10091429
157 Ga0265338_10132473
158 Ga0265324_10000187
159 Ga0265324_10022476
160 Ga0265320_10004268
161 Ga0265320_10006133
162 Ga0265320_10012486
163 Ga0265320_10029226
164 Ga0265340_10006218
165 Ga0265340_10010610
166 Ga0265340_10052009
167 Ga0265327_10000571
168 Ga0265327_10009107
169 Ga0265316_10078318
170 Ga0265313_10008978
171 Ga0265313_10017750
172 Ga0265342_10033718
173 Ga0373930_0000139
174 Ga0373928_0000409
175 Ga0373929_0000824
176 Ga0373949_0001294
177 Ga0373932_0000001
178 Ga0373954_0008747
179 Ga0373956_0001755
180 Ga0373946_0012614
181 Ga0373931_0000004
182 Ga0373927_0007984
183 Ga0373927_0030567
184 Ga0373933_0023299
185 Ga0373947_0019794
186 Ga0373937_0041444
187 Ga0373925_0018374
188 Ga0451577_0006645
189 Ga0453684_0002419
190 Ga0451576_0058848
191 Ga0451576_0102783
192 Ga0495592_0000151
193 Ga0495629_0018644
194 Ga0495662_0014269
195 Ga0495662_0046567
196 Ga0495618_0001287
197 Ga0495618_0021853
198 Ga0495628_0000092
199 Ga0495630_0000049
200 Ga0495630_0007909
201 Ga0495666_0020526
202 Ga0495640_0096949
203 Ga0495640_0097989
204 Ga0495586_0000185
205 Ga0495586_0006199
206 Ga0495586_0007946
207 Ga0495586_0062388
208 Ga0495645_0002195
209 Ga0495645_0094084
210 Ga0495667_0013710
211 Ga0495634_0001900
212 Ga0495634_0007604
213 Ga0495599_0018907
214 Ga0495647_0015575
215 Ga0495581_0040767
216 Ga0495674_0001188
217 Ga0495674_0013246
218 Ga0495676_0016796
219 Ga0495680_0005485
220 Ga0495684_0093435
221 Ga0501032_0039276
222 Ga0501033_0036513
223 Ga0501035_0043940
224 Ga0501044_0007688
225 Ga0500650_0006512
226 Ga0500636_0115037

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01743

PolyA_pol

Poly A polymerase head domain

26

146

0.98

PF12627

PolyA_pol_RNAbd

Probable RNA and SrmB- binding site of polymerase A

173

215

0.95

PF01966

HD

HD domain

306

422

0.77

PF13735

tRNA_NucTran2_2

tRNA nucleotidyltransferase domain 2 putative

355

493

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
6qxn-assembly1.cif.gz_A crystal structure of the cca-adding enzyme of a psychrophilic organism in complex with ctp 0.8629 5 447
7otr-assembly1.cif.gz_A crystal structure of a psychrophilic cca-adding enzyme determined by sad phasing 0.859 1 443
6qy6-assembly1.cif.gz_A crystal structure of the cca-adding enzyme of a psychrophilic organism 0.8539 1 447
6qxn-assembly1.cif.gz_A crystal structure of the cca-adding enzyme of a psychrophilic organism in complex with ctp 0.8523 5 447
6qy6-assembly1.cif.gz_A crystal structure of the cca-adding enzyme of a psychrophilic organism 0.8496 1 447
ID Description Score Start End Superfamily
1miwB01 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.9442 8 144 3.30.460.10
1miyB02 Mainly Alpha;Orthogonal Bundle;Hydrophobic Seed Protein; 0.9172 145 231 1.10.110.30
af_Q2G256_1_109_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.9132 35 142 3.30.460.10
af_Q2G256_1_109_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.8978 35 142 3.30.460.10
af_Q4VBH2_28_179_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.8977 10 137 3.30.460.10
ID Description Score Start End GO Terms
AF-A0A453BVV9-F1-model_v4 Poly A polymerase head domain-containing protein 0.9797 103 190 GO:0001680
GO:0003723
GO:0016779
AF-A0A2E5TXA8-F1-model_v4 Phosphohydrolase 0.9781 5 449 GO:0000049
GO:0000166
GO:0008033
GO:0016779
GO:0016787
AF-A0A2E5TXA8-F1-model_v4 Phosphohydrolase 0.9671 5 449 GO:0000049
GO:0000166
GO:0008033
GO:0016779
GO:0016787
AF-A0A2E3J8Q1-F1-model_v4 Phosphohydrolase 0.9643 5 452 GO:0000049
GO:0000166
GO:0008033
GO:0016779
GO:0016787
AF-X1JQS9-F1-model_v4 Poly A polymerase head domain-containing protein 0.9631 8 157 GO:0000049
GO:0008033
GO:0016779

Map