F066123

General Info

Members Datasets Scaffolds Average Seq Length
111 97 96 293

Family's Representative Sequence

Representative Sequence 3300049582|Ga0501048_0103394|Ga0501048_0103394_824_1798
Length 324
Sequence MKILVAGAQGQLARALLEAAGAHRACHVVALGRPHLDLLDRATIETAFEAVQPDLVVNAAAYTAVDAAERDPAAAHALNRDGAAALAAEAWACRCPIIHVSTDYLFDGAKAAPYVEDDAAAPASVYGRSKLEGEIAVRETNPRHVILRTAWLHAPYGKNFVTTILRLARERRELFVVSDQRGNPTYAPHLAGAVLAIASRIVAGAPGTPWGTYHAAAEGEATWADLAGEILRIGARYGLPAPPIVPISTDEYPAEVRRPANSRLDCTRLARSYGIRLPPWRRGVAECVSRLASARDLGASPAADAGGVAPPAGNGRQQLGGARS

Samples

Sample ID Description Type Environment
1 2508501128 Bradyrhizobium sp. ARR65 Isolate Nodule
2 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
3 2513237104 Bradyrhizobium sp. EC3.3 Isolate Nodule
4 2643221723 Ensifer sp. Root278 Isolate Unclassified
5 2643221733 Bosea sp. Root381 Isolate Unclassified
6 2751185800 Brucella pituitosa AA2 Isolate Unclassified
7 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
8 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
9 2842871566 Phyllobacterium sp. R-73111 Isolate Unclassified
10 2844002411 Mesorhizobium sp. M7D.F.Ca.US.005.01.1.1 Isolate Nodule
11 2844163670 Ensifer sp. 1H6 Isolate Unclassified
12 2894652903 Phyllobacterium sp. SYP-B3895 Isolate Rhizosphere
13 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
14 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
15 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
16 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
17 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
32 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
33 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
37 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
47 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
48 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
49 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
50 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
51 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
52 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
53 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
54 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
55 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
56 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
57 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
58 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
59 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
60 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
61 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
62 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
63 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
64 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
65 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
66 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
67 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
68 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
69 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
70 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
71 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
72 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
75 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
76 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
77 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
78 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
79 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
80 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
82 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
83 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
84 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
85 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
86 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
87 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
88 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
89 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
90 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
91 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
92 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
93 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
94 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
95 8016630954 Bradyrhizobium sp. F1.13.1 Isolate Nodule
96 8019638758 Bradyrhizobium sp. GM5.1 Isolate Nodule
97 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 85.59
Metatranscriptomes 0.9
Isolates 13.51

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.81
Nodule 5.41
Rhizoplane 3.6
Rhizosphere 69.37
Stem 0
Stem Tuber 0
Unclassified 10.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10157114 3300003320 Bacteria 1770
2 Ga0006562J51391_1012741 3300003578 Bacteria 5060
3 Ga0070680_100196215 3300005336 Bacteria 1702
4 Ga0070674_100214141 3300005356 Bacteria 1495
5 Ga0070710_10090351 3300005437 Bacteria 1805
6 Ga0070663_100034733 3300005455 Bacteria 3494
7 Ga0070698_100144610 3300005471 Bacteria 2328
8 Ga0070699_100022020 3300005518 Bacteria 5490
9 Ga0068853_100090220 3300005539 Bacteria 2693
10 Ga0070693_100360820 3300005547 Bacteria 997
11 Ga0068855_100074723 3300005563 Bacteria 3935
12 Ga0068857_100024594 3300005577 Bacteria 5303
13 Ga0068856_100020874 3300005614 Bacteria 6366
14 Ga0068851_10175346 3300005834 Bacteria 1185
15 Ga0081455_10091496 3300005937 Bacteria 2463
16 Ga0075428_100050622 3300006844 Bacteria 4555
17 Ga0075430_100000001 3300006846 Bacteria 185803
18 Ga0075430_100011259 3300006846 Bacteria 7588
19 Ga0075431_100073380 3300006847 Bacteria 3530
20 Ga0105240_10009951 3300009093 Bacteria 13404
21 Ga0105237_10041173 3300009545 Bacteria 4660
22 Ga0105238_10006561 3300009551 Bacteria 11591
23 Ga0105239_10040397 3300010375 Bacteria 5111
24 Ga0105239_10215119 3300010375 Bacteria 2154
25 Ga0157378_10605302 3300013297 Bacteria 1107
26 Ga0163162_10199418 3300013306 Bacteria 2130
27 Ga0209257_1003331 3300025304 Bacteria 13905
28 Ga0209257_1012019 3300025304 Bacteria 4071
29 Ga0207647_10013431 3300025904 Bacteria 5676
30 Ga0207684_10095477 3300025910 Bacteria 2537
31 Ga0207671_10026078 3300025914 Bacteria 4384
32 Ga0207694_10094731 3300025924 Bacteria 2359
33 Ga0207667_10184340 3300025949 Bacteria 2143
34 Ga0207640_10035196 3300025981 Bacteria 3132
35 Ga0207639_10070360 3300026041 Bacteria 2733
36 Ga0207674_10013462 3300026116 Bacteria 9073
37 Ga0265327_10000019 3300031251 Bacteria 427653
38 Ga0307406_10172162 3300031901 Bacteria 1568
39 Ga0373956_0101907 3300035119 Bacteria 1332
40 Ga0373933_0121576 3300035724 Bacteria 1635
41 Ga0395899_0169554 3300037312 Bacteria 1538
42 Ga0395900_0100134 3300037418 Bacteria 2977
43 Ga0395900_0105876 3300037418 Bacteria 2889
44 Ga0395898_0487143 3300037466 Bacteria 1173
45 Ga0495629_0324465 3300046459 Bacteria 1052
46 Ga0495664_0068625 3300046477 Bacteria 2116
47 Ga0495664_0214701 3300046477 Bacteria 1165
48 Ga0495648_0007310 3300046524 Bacteria 8854
49 Ga0495652_0089916 3300046529 Bacteria 2513
50 Ga0495587_0140951 3300046536 Bacteria 1376
51 Ga0495667_0309324 3300046559 Bacteria 1001
52 Ga0495668_0021397 3300046616 Bacteria 3709
53 Ga0495600_0022170 3300046809 Bacteria 4075
54 Ga0495600_0160120 3300046809 Bacteria 1455
55 Ga0495581_0388837 3300047315 Bacteria 814
56 Ga0495604_0017865 3300047317 Bacteria 5674
57 Ga0495636_0032767 3300047318 Bacteria 2132
58 Ga0495680_0111117 3300047322 Bacteria 2031
59 Ga0496102_0144642 3300048905 Bacteria 2231
60 Ga0496107_0197515 3300048910 Bacteria 1495
61 Ga0496109_0311683 3300048912 Bacteria 1485
62 Ga0496112_0415846 3300048915 Bacteria 1284
63 Ga0496119_0104810 3300048922 Bacteria 1581
64 Ga0496122_0108501 3300048925 Bacteria 1831
65 Ga0496125_0001114 3300048928 Bacteria 41120
66 Ga0496125_0002760 3300048928 Bacteria 22221
67 Ga0501046_0000232 3300049580 Bacteria 57443
68 Ga0501048_0103394 3300049582 Bacteria 2010
69 Ga0501071_0041532 3300049587 Bacteria 3294
70 Ga0501076_0042789 3300049592 Bacteria 3567
71 Ga0501077_0019952 3300049593 Bacteria 4241
72 Ga0501077_0052247 3300049593 Bacteria 2596
73 Ga0501079_0097491 3300049741 Bacteria 2279
74 Ga0501080_0050720 3300049742 Bacteria 3862
75 Ga0501083_0032566 3300049744 Bacteria 3574
76 Ga0501035_0187598 3300049822 Bacteria 1779
77 Ga0501044_0566524 3300049823 Bacteria 1032
78 nmdc:mga05p37_70869_c1 3300050507 Bacteria 4287
79 nmdc:mga0qj67_138750_c1 3300050509 Bacteria 1971
80 nmdc:mga0qj67_47_c1 3300050509 Bacteria 86979
81 nmdc:mga06r32_397004_c1 3300050510 Bacteria 1361
82 nmdc:mga06r32_77025_c1 3300050510 Bacteria 3239
83 Ga0495601_0086059 3300053077 Bacteria 2020
84 Ga0495612_0012058 3300053078 Bacteria 3482
85 Ga0500556_0000519 3300053104 Bacteria 26335
86 Ga0500618_037180 3300053125 Bacteria 1126
87 Ga0500568_0000448 3300053139 Bacteria 30974
88 Ga0500590_000026 3300053148 Bacteria 36766
89 Ga0500616_0000031 3300053153 Bacteria 415013
90 Ga0500616_0000339 3300053153 Bacteria 66939
91 Ga0500616_0001524 3300053153 Bacteria 21828
92 Ga0500616_0006544 3300053153 Bacteria 7611
93 Ga0500616_0012517 3300053153 Bacteria 4962
94 Ga0500634_0000009 3300053161 Bacteria 144333
95 Ga0501082_0017126 3300060353 Bacteria 6243
96 Ga0530510_0074539 3300061734 Bacteria 2464

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300047315 Ga0495581_0388837 Ga0495581_0388837_13_744 242
2 3300013297 Ga0157378_10605302 Ga0157378_106053021 263
3 3300053161 Ga0500634_0000009 Ga0500634_0000009_55440_56237 264
4 iso_pu_bacteria 2844002411 2844005519 264
5 3300025981 Ga0207640_10035196 Ga0207640_100351962 268
6 3300037418 Ga0395900_0105876 Ga0395900_0105876_1606_2454 269
7 3300037466 Ga0395898_0487143 Ga0395898_0487143_82_930 269
8 iso_pu_bacteria 2844163670 2844165364 270
9 3300005563 Ga0068855_100074723 Ga0068855_1000747233 271
10 3300005577 Ga0068857_100024594 Ga0068857_1000245943 271
11 3300005614 Ga0068856_100020874 Ga0068856_1000208743 271
12 3300005834 Ga0068851_10175346 Ga0068851_101753462 271
13 3300026116 Ga0207674_10013462 Ga0207674_100134626 271
14 3300037312 Ga0395899_0169554 Ga0395899_0169554_426_1241 271
15 3300009545 Ga0105237_10041173 Ga0105237_100411733 272
16 3300049823 Ga0501044_0566524 Ga0501044_0566524_20_841 272
17 3300003578 Ga0006562J51391_1012741 Ga0006562J51391_10127415 275
18 3300049580 Ga0501046_0000232 Ga0501046_0000232_52471_53304 276
19 3300005455 Ga0070663_100034733 Ga0070663_1000347331 279
20 3300005539 Ga0068853_100090220 Ga0068853_1000902202 279
21 3300025904 Ga0207647_10013431 Ga0207647_100134313 279
22 3300025914 Ga0207671_10026078 Ga0207671_100260782 279
23 3300025924 Ga0207694_10094731 Ga0207694_100947312 279
24 3300025949 Ga0207667_10184340 Ga0207667_101843403 279
25 3300026041 Ga0207639_10070360 Ga0207639_100703602 279
26 3300010375 Ga0105239_10040397 Ga0105239_100403971 280
27 3300031251 Ga0265327_10000019 Ga0265327_10000019344 282
28 3300005937 Ga0081455_10091496 Ga0081455_100914962 284
29 3300005547 Ga0070693_100360820 Ga0070693_1003608201 286
30 iso_pu_bacteria 2751185800 2753357640 287
31 iso_pu_bacteria 2758568016 2758639847 287
32 3300005336 Ga0070680_100196215 Ga0070680_1001962152 288
33 3300046459 Ga0495629_0324465 Ga0495629_0324465_134_1033 289
34 3300046477 Ga0495664_0068625 Ga0495664_0068625_349_1248 289
35 3300046536 Ga0495587_0140951 Ga0495587_0140951_66_965 289
36 3300046809 Ga0495600_0160120 Ga0495600_0160120_151_1050 289
37 3300047317 Ga0495604_0017865 Ga0495604_0017865_3514_4413 289
38 3300046809 Ga0495600_0022170 Ga0495600_0022170_787_1686 290
39 3300053077 Ga0495601_0086059 Ga0495601_0086059_87_986 290
40 3300053148 Ga0500590_000026 Ga0500590_000026_6119_7018 290
41 iso_pu_bacteria 2643221723 2644674413 290
42 3300048925 Ga0496122_0108501 Ga0496122_0108501_901_1779 291
43 3300048928 Ga0496125_0001114 Ga0496125_0001114_16631_17545 292
44 3300053139 Ga0500568_0000448 Ga0500568_0000448_18461_19339 292
45 iso_pu_bacteria 2513237104 2513716438 292
46 iso_pu_bacteria 2840764183 2840764461 292
47 iso_pu_bacteria 8016630954 8016632927 292
48 3300005356 Ga0070674_100214141 Ga0070674_1002141411 293
49 3300031901 Ga0307406_10172162 Ga0307406_101721623 293
50 3300037418 Ga0395900_0100134 Ga0395900_0100134_79_963 293
51 3300046616 Ga0495668_0021397 Ga0495668_0021397_187_1068 293
52 3300047318 Ga0495636_0032767 Ga0495636_0032767_891_1772 293
53 3300049822 Ga0501035_0187598 Ga0501035_0187598_844_1728 293
54 3300053104 Ga0500556_0000519 Ga0500556_0000519_11887_12771 293
55 3300053153 Ga0500616_0000339 Ga0500616_0000339_43970_44851 293
56 3300053153 Ga0500616_0001524 Ga0500616_0001524_11781_12662 293
57 3300053153 Ga0500616_0012517 Ga0500616_0012517_1180_2064 293
58 iso_pu_bacteria 2511231027 2511389227 293
59 iso_pu_bacteria 2643221733 2644731463 293
60 iso_pu_bacteria 2842871566 2842873165 293
61 3300005437 Ga0070710_10090351 Ga0070710_100903512 294
62 3300025304 Ga0209257_1003331 Ga0209257_10033315 294
63 3300035724 Ga0373933_0121576 Ga0373933_0121576_360_1247 294
64 3300046477 Ga0495664_0214701 Ga0495664_0214701_99_986 294
65 3300046559 Ga0495667_0309324 Ga0495667_0309324_35_922 294
66 3300048905 Ga0496102_0144642 Ga0496102_0144642_124_1011 294
67 3300048910 Ga0496107_0197515 Ga0496107_0197515_176_1063 294
68 3300048912 Ga0496109_0311683 Ga0496109_0311683_126_1013 294
69 3300049593 Ga0501077_0052247 Ga0501077_0052247_1178_2089 294
70 iso_pu_bacteria 8024486573 8024487631 294
71 3300048915 Ga0496112_0415846 Ga0496112_0415846_237_1124 295
72 3300048928 Ga0496125_0002760 Ga0496125_0002760_1729_2619 295
73 3300009093 Ga0105240_10009951 Ga0105240_1000995110 296
74 3300009551 Ga0105238_10006561 Ga0105238_100065613 296
75 3300046524 Ga0495648_0007310 Ga0495648_0007310_6605_7498 296
76 iso_pu_bacteria 2508501128 2509152941 296
77 iso_pu_bacteria 2894652903 2894653174 296
78 iso_pu_bacteria 8019638758 8019643272 296
79 3300005471 Ga0070698_100144610 Ga0070698_1001446102 297
80 3300005518 Ga0070699_100022020 Ga0070699_1000220203 297
81 3300010375 Ga0105239_10215119 Ga0105239_102151192 297
82 3300025910 Ga0207684_10095477 Ga0207684_100954772 297
83 3300053125 Ga0500618_037180 Ga0500618_037180_190_1083 297
84 3300006846 Ga0075430_100000001 Ga0075430_10000000150 298
85 3300025304 Ga0209257_1012019 Ga0209257_10120193 298
86 3300050509 nmdc:mga0qj67_47_c1 nmdc:mga0qj67_47_c1_46012_46908 298
87 3300053153 Ga0500616_0006544 Ga0500616_0006544_643_1590 298
88 3300013306 Ga0163162_10199418 Ga0163162_101994183 299
89 3300035119 Ga0373956_0101907 Ga0373956_0101907_347_1318 299
90 3300046529 Ga0495652_0089916 Ga0495652_0089916_810_1781 299
91 3300047322 Ga0495680_0111117 Ga0495680_0111117_834_1805 299
92 3300048922 Ga0496119_0104810 Ga0496119_0104810_299_1201 299
93 3300053078 Ga0495612_0012058 Ga0495612_0012058_1795_2766 299
94 3300006844 Ga0075428_100050622 Ga0075428_1000506223 300
95 3300006846 Ga0075430_100011259 Ga0075430_1000112596 300
96 3300006847 Ga0075431_100073380 Ga0075431_1000733803 300
97 3300050507 nmdc:mga05p37_70869_c1 nmdc:mga05p37_70869_c1_2946_3851 300
98 3300050509 nmdc:mga0qj67_138750_c1 nmdc:mga0qj67_138750_c1_735_1640 300
99 3300050510 nmdc:mga06r32_397004_c1 nmdc:mga06r32_397004_c1_233_1138 300
100 3300050510 nmdc:mga06r32_77025_c1 nmdc:mga06r32_77025_c1_1607_2512 300
101 3300053153 Ga0500616_0000031 Ga0500616_0000031_218751_219656 300
102 3300049582 Ga0501048_0103394 Ga0501048_0103394_824_1798 310
103 3300049587 Ga0501071_0041532 Ga0501071_0041532_2291_3265 310
104 3300049592 Ga0501076_0042789 Ga0501076_0042789_348_1322 310
105 3300049593 Ga0501077_0019952 Ga0501077_0019952_1013_1987 310
106 3300049741 Ga0501079_0097491 Ga0501079_0097491_1002_1976 310
107 3300049742 Ga0501080_0050720 Ga0501080_0050720_1829_2803 310
108 3300049744 Ga0501083_0032566 Ga0501083_0032566_1407_2381 310
109 3300060353 Ga0501082_0017126 Ga0501082_0017126_1733_2707 310
110 3300061734 Ga0530510_0074539 Ga0530510_0074539_566_1540 310
111 3300003320 rootH2_10157114 rootH2_101571142 316

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04321

RmlD_sub_bind

RmlD substrate binding domain

1

293

0.97

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

21

168

0.92

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

3

212

0.88

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

18

162

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vl0-assembly1.cif.gz_B crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution 0.9743 7 296
3sc6-assembly5.cif.gz_E 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp 0.9642 6 295
3sc6-assembly6.cif.gz_F 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp 0.9637 6 295
1vl0-assembly1.cif.gz_B crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution 0.9607 7 296
8ctr-assembly4.cif.gz_D crystal structure of dtdp-4-dehydrorhamnose reductase from klebsiella pneumoniae with bound nadp 0.9545 6 298
ID Description Score Start End Superfamily
1vl0B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9597 8 222 3.40.50.720
3sc6D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9507 2 223 3.40.50.720
1kc0A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9363 7 297 3.40.50.720
4wpgA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9343 6 223 3.40.50.720
1n2sA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9144 7 282 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A436FP44-F1-model_v4 deleted 0.9921 47 297
AF-A0A357D7T4-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9842 48 138 GO:0005829
GO:0008831
GO:0019305
GO:0045226
AF-A0A0F5FSB2-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9838 7 297 GO:0008831
GO:0019305
AF-A0A2E1HDB2-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9828 7 296 GO:0008831
GO:0019305
AF-A0A531NB46-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9811 157 297 GO:0005829
GO:0008831
GO:0019305
GO:0045226

Feature Viewer

pLDDT pTM Quality
91.93 0.89 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map