F063846

General Info

Members Datasets Scaffolds Average Seq Length
111 96 107 545

Family's Representative Sequence

Representative Sequence 3300009098|Ga0105245_10003630|Ga0105245_100036309
Length 567
Sequence MPLFSILTPVFDTPADVLAATLRSVRTQSFGDWELCLVDDCSTAPHVGEMLARAQREDDRIRVERRAENGGIVAASNDALAMARGEFVALLDHDDELHPAALERVAAAIAAAPEADYLYTDEDKVDRAGRPSGPFFKPDWSPERMRTQMYTCHLSVMRRKLVEEVGGFDPEFEGSQDWDLVLRVTERARAVAHVPEVLYHWRTLETSTAGAGEEAKPWAFEAGRRAVQAHCERIGLPAQVERDLDVPGVYHLQPRLQREPLVSIVIPTAGGSREVRFQEVVLIEHCLRSIAASSTYENYEIVVVTDGALDPALEDRLRGIAGDRLRLVPFEGEFNFSAKINRGVVHSNGERLLLLNDDMEVVAPNWIERMVMYLELNEVGAVGGRLILEDGRPQHVGILFENGGYPGHIYHGFSPGFRGYSNNVLVAQNYLAVTAACLMTTREAFDEVGGFSAAFPSSYNDMDFCLKLRTTGRRVVYDPDTVLYHFESSSRNNEVEDWEKQQLLDRWLHLTATDPFTNPALRHGLPRIGAGVRNVIGGLARRSRLGRLRAVDSPPGSASPRARRRGR

Samples

Sample ID Description Type Environment
1 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
2 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
3 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
4 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
5 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
6 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
21 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
22 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
26 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
27 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
28 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
29 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
33 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
36 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
37 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
51 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
52 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
53 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
54 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
55 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
56 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
57 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
58 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
59 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
60 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
61 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
62 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
63 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
64 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
65 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
66 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
67 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
68 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
69 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
70 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
71 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
72 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
73 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
74 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
75 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
76 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
77 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
78 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
79 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
80 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
81 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
83 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
84 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
85 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
86 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
87 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
88 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
89 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
90 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
91 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
92 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
93 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
94 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
95 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
96 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.4
Metatranscriptomes 0
Isolates 3.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.91
Nodule 0
Rhizoplane 14.41
Rhizosphere 63.96
Stem 0
Stem Tuber 0
Unclassified 11.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24746J21847_1000228 3300001977 Bacteria 7684
2 JGI24034J26672_10000095 3300002239 Bacteria 15947
3 Ga0070682_100000040 3300005337 Bacteria 143944
4 Ga0068868_100004222 3300005338 Bacteria 10051
5 Ga0070691_10000098 3300005341 Bacteria 25336
6 Ga0070674_100000016 3300005356 Bacteria 91058
7 Ga0070659_100013926 3300005366 Bacteria 6002
8 Ga0070667_100040767 3300005367 Bacteria 3895
9 Ga0070713_100000055 3300005436 Bacteria 70759
10 Ga0070678_100000713 3300005456 Bacteria 16488
11 Ga0070685_10000092 3300005466 Bacteria 55484
12 Ga0070685_10000360 3300005466 Bacteria 27792
13 Ga0070684_100026259 3300005535 Bacteria 4905
14 Ga0070665_100036005 3300005548 Bacteria 4980
15 Ga0068856_100003489 3300005614 Bacteria 15873
16 Ga0068852_100000195 3300005616 Bacteria 41405
17 Ga0068866_10000426 3300005718 Bacteria 19573
18 Ga0068851_10000138 3300005834 Bacteria 39261
19 Ga0081540_1000419 3300005983 Bacteria 41957
20 Ga0081539_10000615 3300005985 Bacteria 72134
21 Ga0075365_10000316 3300006038 Bacteria 17029
22 Ga0075365_10005782 3300006038 Bacteria 6716
23 Ga0075363_100001039 3300006048 Bacteria 9995
24 Ga0075364_10001830 3300006051 Bacteria 11783
25 Ga0075364_10016917 3300006051 Bacteria 4544
26 Ga0075362_10039295 3300006177 Bacteria 2080
27 Ga0075430_100014604 3300006846 Bacteria 6690
28 Ga0068865_100000009 3300006881 Bacteria 168291
29 Ga0111539_10024600 3300009094 Bacteria 7386
30 Ga0105245_10003630 3300009098 Bacteria 13775
31 Ga0105248_10000307 3300009177 Bacteria 58221
32 Ga0157371_10002484 3300013102 Bacteria 17529
33 Ga0157372_10000150 3300013307 Bacteria 75963
34 Ga0157375_10004632 3300013308 Bacteria 11949
35 Ga0157380_10000096 3300014326 Bacteria 48405
36 Ga0207656_10000578 3300025321 Bacteria 12139
37 Ga0207642_10000157 3300025899 Bacteria 19492
38 Ga0207649_10000024 3300025920 Bacteria 183104
39 Ga0207687_10002533 3300025927 Bacteria 12404
40 Ga0207700_10000009 3300025928 Bacteria 314953
41 Ga0207686_10000107 3300025934 Bacteria 67766
42 Ga0207669_10000037 3300025937 Bacteria 77494
43 Ga0207704_10000009 3300025938 Bacteria 198266
44 Ga0207711_10000024 3300025941 Bacteria 293596
45 Ga0207677_10000605 3300026023 Bacteria 22116
46 Ga0207702_10006973 3300026078 Bacteria 9671
47 Ga0207683_10002711 3300026121 Bacteria 15470
48 Ga0207698_10000009 3300026142 Bacteria 281300
49 Ga0316584_0033996 3300036712 Bacteria 3778
50 Ga0466963_0020791 3300044694 Bacteria 4132
51 Ga0466967_0000020 3300045976 Bacteria 78851
52 Ga0495629_0000674 3300046459 Bacteria 27697
53 Ga0495629_0001233 3300046459 Bacteria 20100
54 Ga0495628_0003567 3300046516 Bacteria 13932
55 Ga0495630_0000115 3300046517 Bacteria 63124
56 Ga0495652_0007748 3300046529 Bacteria 9875
57 Ga0495622_0000325 3300046557 Bacteria 35075
58 Ga0495634_0002223 3300046642 Bacteria 16268
59 Ga0495625_0000154 3300046660 Bacteria 105083
60 Ga0495647_0000492 3300046681 Bacteria 11492
61 Ga0495658_0004838 3300046683 Bacteria 6607
62 Ga0495613_0000175 3300046689 Bacteria 62391
63 Ga0495624_0000149 3300046690 Bacteria 51112
64 Ga0495602_0000063 3300048088 Bacteria 104915
65 Ga0495602_0000988 3300048088 Bacteria 27558
66 Ga0496102_0000533 3300048905 Bacteria 41239
67 Ga0496102_0004551 3300048905 Bacteria 11720
68 Ga0496103_0000001 3300048906 Bacteria 643471
69 Ga0496103_0027317 3300048906 Bacteria 3457
70 Ga0496104_0000002 3300048907 Bacteria 686017
71 Ga0496104_0000243 3300048907 Bacteria 48237
72 Ga0496105_0000001 3300048908 Bacteria 1328178
73 Ga0496105_0000622 3300048908 Bacteria 23722
74 Ga0496108_0000012 3300048911 Bacteria 258433
75 Ga0496109_0000057 3300048912 Bacteria 120274
76 Ga0496109_0006379 3300048912 Bacteria 9928
77 Ga0496109_0287361 3300048912 Unclassified 1550
78 Ga0496110_0000170 3300048913 Bacteria 39947
79 Ga0496111_0000001 3300048914 Bacteria 194837
80 Ga0496113_0000010 3300048916 Bacteria 86561
81 Ga0496115_0000004 3300048918 Bacteria 319734
82 Ga0496116_0000500 3300048919 Bacteria 53809
83 Ga0496117_0001638 3300048920 Bacteria 31520
84 Ga0496117_0026078 3300048920 Bacteria 4580
85 Ga0496118_0001199 3300048921 Bacteria 39892
86 Ga0496119_0001539 3300048922 Bacteria 27538
87 Ga0496119_0009040 3300048922 Bacteria 8637
88 Ga0496119_0016470 3300048922 Bacteria 5625
89 Ga0496120_0000528 3300048923 Bacteria 59001
90 Ga0496126_0008917 3300048929 Bacteria 10741
91 Ga0501034_0004977 3300049571 Bacteria 14620
92 Ga0501068_0039766 3300049584 Bacteria 2821
93 Ga0501070_0003280 3300049586 Bacteria 14043
94 Ga0501080_0248536 3300049742 Bacteria 1622
95 Ga0501083_0001778 3300049744 Bacteria 14725
96 nmdc:mga03n38_26968_c1 3300050490 Bacteria 2378
97 nmdc:mga00v17_15193_c1 3300050491 Bacteria 4316
98 nmdc:mga00v17_9116_c1 3300050491 Bacteria 5357
99 nmdc:mga0yw44_4069_c1 3300050492 Bacteria 6625
100 nmdc:mga0qj67_10379_c1 3300050509 Bacteria 6958
101 Ga0495601_0000041 3300053077 Bacteria 79353
102 Ga0495655_0000012 3300053083 Bacteria 92485
103 Ga0495595_0003516 3300053084 Bacteria 6221
104 Ga0495619_0000018 3300053085 Bacteria 209943
105 Ga0500628_000014 3300053129 Bacteria 102838
106 Ga0501084_0169002 3300054114 Bacteria 1846
107 Ga0530510_0035552 3300061734 Bacteria 3591

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048912 Ga0496109_0287361 Ga0496109_0287361_75_1532 469
2 3300049742 Ga0501080_0248536 Ga0501080_0248536_61_1545 492
3 3300050490 nmdc:mga03n38_26968_c1 nmdc:mga03n38_26968_c1_443_1987 514
4 3300050491 nmdc:mga00v17_9116_c1 nmdc:mga00v17_9116_c1_298_1842 514
5 iso_pu_bacteria 2808606439 2809195526 516
6 iso_pu_bacteria 2811994878 2812350408 516
7 iso_pu_bacteria 2891968417 2891971975 516
8 3300005983 Ga0081540_1000419 Ga0081540_100041929 517
9 3300046681 Ga0495647_0000492 Ga0495647_0000492_4510_6162 519
10 iso_pu_bacteria 2773857762 2774393589 520
11 3300002239 JGI24034J26672_10000095 JGI24034J26672_100000956 522
12 3300048907 Ga0496104_0000243 Ga0496104_0000243_28433_30085 528
13 3300048908 Ga0496105_0000622 Ga0496105_0000622_14134_15786 528
14 3300049744 Ga0501083_0001778 Ga0501083_0001778_4680_6317 528
15 3300005356 Ga0070674_100000016 Ga0070674_10000001676 531
16 3300005718 Ga0068866_10000426 Ga0068866_1000042610 531
17 3300006038 Ga0075365_10000316 Ga0075365_1000031610 531
18 3300006038 Ga0075365_10005782 Ga0075365_100057825 531
19 3300006051 Ga0075364_10001830 Ga0075364_100018308 531
20 3300006051 Ga0075364_10016917 Ga0075364_100169173 531
21 3300006177 Ga0075362_10039295 Ga0075362_100392952 531
22 3300025899 Ga0207642_10000157 Ga0207642_100001576 531
23 3300025937 Ga0207669_10000037 Ga0207669_1000003714 531
24 3300036712 Ga0316584_0033996 Ga0316584_0033996_2151_3746 531
25 3300048907 Ga0496104_0000002 Ga0496104_0000002_256277_257923 531
26 3300048908 Ga0496105_0000001 Ga0496105_0000001_1070256_1071902 531
27 3300048922 Ga0496119_0009040 Ga0496119_0009040_2723_4369 531
28 3300050491 nmdc:mga00v17_15193_c1 nmdc:mga00v17_15193_c1_867_2462 531
29 3300050492 nmdc:mga0yw44_4069_c1 nmdc:mga0yw44_4069_c1_1605_3200 531
30 3300006048 Ga0075363_100001039 Ga0075363_1000010392 532
31 3300054114 Ga0501084_0169002 Ga0501084_0169002_100_1746 534
32 3300061734 Ga0530510_0035552 Ga0530510_0035552_1905_3551 534
33 3300046690 Ga0495624_0000149 Ga0495624_0000149_27845_29506 535
34 3300049586 Ga0501070_0003280 Ga0501070_0003280_7076_8722 536
35 3300009094 Ga0111539_10024600 Ga0111539_100246002 538
36 3300046642 Ga0495634_0002223 Ga0495634_0002223_8293_9927 539
37 3300005366 Ga0070659_100013926 Ga0070659_1000139264 540
38 3300013308 Ga0157375_10004632 Ga0157375_100046328 540
39 3300005834 Ga0068851_10000138 Ga0068851_1000013817 541
40 3300009098 Ga0105245_10003630 Ga0105245_100036309 541
41 3300013102 Ga0157371_10002484 Ga0157371_1000248414 541
42 3300025321 Ga0207656_10000578 Ga0207656_100005784 541
43 3300025927 Ga0207687_10002533 Ga0207687_100025339 541
44 3300045976 Ga0466967_0000020 Ga0466967_0000020_62114_63784 541
45 3300048913 Ga0496110_0000170 Ga0496110_0000170_17569_19218 541
46 3300048914 Ga0496111_0000001 Ga0496111_0000001_57446_59095 541
47 3300048916 Ga0496113_0000010 Ga0496113_0000010_62737_64389 541
48 3300053085 Ga0495619_0000018 Ga0495619_0000018_35950_37629 541
49 3300005466 Ga0070685_10000092 Ga0070685_1000009233 542
50 3300009177 Ga0105248_10000307 Ga0105248_1000030734 542
51 3300025941 Ga0207711_10000024 Ga0207711_1000002412 542
52 3300005338 Ga0068868_100004222 Ga0068868_1000042222 543
53 3300005341 Ga0070691_10000098 Ga0070691_100000988 543
54 3300005367 Ga0070667_100040767 Ga0070667_1000407673 543
55 3300005456 Ga0070678_100000713 Ga0070678_10000071311 543
56 3300005548 Ga0070665_100036005 Ga0070665_1000360053 543
57 3300005614 Ga0068856_100003489 Ga0068856_10000348914 543
58 3300005616 Ga0068852_100000195 Ga0068852_10000019522 543
59 3300006846 Ga0075430_100014604 Ga0075430_1000146044 543
60 3300006881 Ga0068865_100000009 Ga0068865_10000000974 543
61 3300014326 Ga0157380_10000096 Ga0157380_1000009625 543
62 3300025934 Ga0207686_10000107 Ga0207686_1000010751 543
63 3300025938 Ga0207704_10000009 Ga0207704_10000009179 543
64 3300026023 Ga0207677_10000605 Ga0207677_1000060514 543
65 3300026078 Ga0207702_10006973 Ga0207702_100069737 543
66 3300026121 Ga0207683_10002711 Ga0207683_1000271110 543
67 3300026142 Ga0207698_10000009 Ga0207698_10000009150 543
68 3300044694 Ga0466963_0020791 Ga0466963_0020791_1586_3247 543
69 3300046459 Ga0495629_0000674 Ga0495629_0000674_13537_15198 543
70 3300046459 Ga0495629_0001233 Ga0495629_0001233_13719_15356 543
71 3300046517 Ga0495630_0000115 Ga0495630_0000115_32654_34324 543
72 3300046683 Ga0495658_0004838 Ga0495658_0004838_1292_2953 543
73 3300048905 Ga0496102_0004551 Ga0496102_0004551_7948_9591 543
74 3300048906 Ga0496103_0027317 Ga0496103_0027317_925_2562 543
75 3300048911 Ga0496108_0000012 Ga0496108_0000012_132602_134263 543
76 3300048912 Ga0496109_0000057 Ga0496109_0000057_91049_92710 543
77 3300048919 Ga0496116_0000500 Ga0496116_0000500_2835_4472 543
78 3300048920 Ga0496117_0001638 Ga0496117_0001638_19377_21020 543
79 3300048920 Ga0496117_0026078 Ga0496117_0026078_2430_4067 543
80 3300048921 Ga0496118_0001199 Ga0496118_0001199_32037_33680 543
81 3300048922 Ga0496119_0001539 Ga0496119_0001539_2833_4470 543
82 3300048922 Ga0496119_0016470 Ga0496119_0016470_2345_3982 543
83 3300048923 Ga0496120_0000528 Ga0496120_0000528_34257_35894 543
84 3300048929 Ga0496126_0008917 Ga0496126_0008917_2655_4292 543
85 3300049571 Ga0501034_0004977 Ga0501034_0004977_2526_4175 543
86 3300049584 Ga0501068_0039766 Ga0501068_0039766_128_1786 543
87 3300050509 nmdc:mga0qj67_10379_c1 nmdc:mga0qj67_10379_c1_2375_4036 543
88 3300053083 Ga0495655_0000012 Ga0495655_0000012_69935_71599 543
89 3300053129 Ga0500628_000014 Ga0500628_000014_90599_92263 543
90 3300046660 Ga0495625_0000154 Ga0495625_0000154_71750_73390 544
91 3300048905 Ga0496102_0000533 Ga0496102_0000533_37460_39109 544
92 3300048906 Ga0496103_0000001 Ga0496103_0000001_309414_311063 544
93 3300048912 Ga0496109_0006379 Ga0496109_0006379_2422_4077 544
94 3300005337 Ga0070682_100000040 Ga0070682_10000004075 545
95 3300005436 Ga0070713_100000055 Ga0070713_10000005517 545
96 3300005535 Ga0070684_100026259 Ga0070684_1000262593 545
97 3300005985 Ga0081539_10000615 Ga0081539_1000061554 545
98 3300013307 Ga0157372_10000150 Ga0157372_1000015043 545
99 3300025928 Ga0207700_10000009 Ga0207700_10000009298 545
100 3300046689 Ga0495613_0000175 Ga0495613_0000175_29037_30701 545
101 3300048088 Ga0495602_0000063 Ga0495602_0000063_76034_77698 545
102 3300053077 Ga0495601_0000041 Ga0495601_0000041_64473_66137 545
103 3300053084 Ga0495595_0003516 Ga0495595_0003516_2557_4221 545
104 3300005466 Ga0070685_10000360 Ga0070685_100003602 546
105 3300025920 Ga0207649_10000024 Ga0207649_10000024165 546
106 3300046516 Ga0495628_0003567 Ga0495628_0003567_11090_12751 546
107 3300046557 Ga0495622_0000325 Ga0495622_0000325_23800_25500 546
108 3300048088 Ga0495602_0000988 Ga0495602_0000988_2794_4455 546
109 3300048918 Ga0496115_0000004 Ga0496115_0000004_119484_121184 546
110 3300001977 JGI24746J21847_1000228 JGI24746J21847_10002283 547
111 3300046529 Ga0495652_0007748 Ga0495652_0007748_4323_6005 547

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00535

Glycos_transf_2

Glycosyl transferase family 2

5

166

0.91

PF13641

Glyco_tranf_2_3

Glycosyltransferase like family 2

259

508

0.77

PF00535

Glycos_transf_2

Glycosyl transferase family 2

263

449

0.75

PF13641

Glyco_tranf_2_3

Glycosyltransferase like family 2

2

222

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
6p61-assembly2.cif.gz_B structure of a glycosyltransferase from leptospira borgpetersenii serovar hardjo-bovis (strain jb197) 0.8942 2 205
6p61-assembly3.cif.gz_C structure of a glycosyltransferase from leptospira borgpetersenii serovar hardjo-bovis (strain jb197) 0.8911 2 206
6p61-assembly2.cif.gz_B structure of a glycosyltransferase from leptospira borgpetersenii serovar hardjo-bovis (strain jb197) 0.8897 2 205
6p61-assembly3.cif.gz_C structure of a glycosyltransferase from leptospira borgpetersenii serovar hardjo-bovis (strain jb197) 0.8867 2 206
1h7q-assembly1.cif.gz_A dtdp-manganese complex of spsa from bacillus subtilis 0.8276 4 207
ID Description Score Start End Superfamily
2z86D01 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9043 3 255 3.90.550.10
af_A0A2R8QCE8_89_340_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8789 4 115 3.90.550.10
af_Q54GU8_58_380_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8529 6 188 3.90.550.10
af_P9WMX7_1_219_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.845 1 207 3.90.550.10
af_Q54Q41_157_512_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8429 3 236 3.90.550.10
ID Description Score Start End GO Terms
AF-A0A2V6ES42-F1-model_v4 Glycosyl transferase family 2 0.9717 4 240 GO:0016740
AF-A0A2V5MHX9-F1-model_v4 Glycosyltransferase 2-like domain-containing protein 0.9631 4 260 GO:0016757
AF-A0A4U7ND02-F1-model_v4 deleted 0.9593 2 115
AF-A0A3B9WM74-F1-model_v4 Glycosyltransferase 2-like domain-containing protein 0.9526 326 521
AF-A0A7T5FFG6-F1-model_v4 deleted 0.9492 2 259

Feature Viewer

pLDDT pTM Quality
91 0.89 High
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Predicted Structure (AlphaFold2)

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