F056627
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 109 | 104 | 218 | 247 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2912757875|2912764494 |
| Length | 263 |
| Sequence | EVPLASPTFRLAYVPGVIPGKWVRIWNERLPDIPLTLTTVSAAEAADTLRADGADAGFVRLPVDRTDLSAIPLYTETTVVLVPKDHLVAAVDEVSVADLADDILLHPLDDTLDWAGPLPGRPANERPATTADAVELVAAGIGLLVVPQSLARLHHRKDLTYRPVSDAPESRVALSWPQERTTDLVEEFIGIVRGRTVNSSRGRRPAPAQQQASKTKPKPKHGRSDAGGARRKPAAGGSTGKNPRGGGSGGAKSGRRGKPGRRS |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 2 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 3 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 4 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 5 | 3300015688 | Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 | Metagenome | Rhizosphere |
| 6 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 7 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 8 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 9 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 10 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 11 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 12 | 3300030521 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM | Metagenome | Unclassified |
| 13 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 14 | 3300031616 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM | Metagenome | Unclassified |
| 15 | 3300031649 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM | Metagenome | Unclassified |
| 16 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 17 | 3300033179 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM | Metagenome | Unclassified |
| 18 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 19 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 20 | 3300044719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R | Metagenome | Rhizosphere |
| 21 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 22 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 23 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 24 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 25 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 26 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 27 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 28 | 3300046475 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere | Metagenome | Rhizosphere |
| 29 | 3300046476 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere | Metagenome | Rhizosphere |
| 30 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 31 | 3300046674 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere | Metagenome | Rhizosphere |
| 32 | 3300046675 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere | Metagenome | Rhizosphere |
| 33 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 34 | 3300046809 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere | Metagenome | Rhizosphere |
| 35 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 36 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 37 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 38 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 39 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 40 | 3300053140 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere | Metagenome | Endosphere |
| 41 | 2912757875 | Streptomyces sp. S4.7 | Isolate | Rhizosphere |
| 42 | 2582581313 | Streptomyces mirabilis OV308 | Isolate | Rhizosphere |
| 43 | 2616644941 | Streptomyces atratus OK807 | Isolate | Rhizosphere |
| 44 | 2643221587 | Streptomyces sp. Root66D1 | Isolate | Unclassified |
| 45 | 2643221647 | Streptomyces sp. Root369 | Isolate | Unclassified |
| 46 | 2643221673 | Streptomyces sp. Root1295 | Isolate | Unclassified |
| 47 | 2643221677 | Streptomyces sp. Root1304 | Isolate | Unclassified |
| 48 | 2643221682 | Streptomyces sp. Root1319 | Isolate | Unclassified |
| 49 | 2767802112 | Streptomyces avicenniae NRRL B-24776 | Isolate | Rhizosphere |
| 50 | 2775506925 | Saccharopolyspora phatthalungensis NRRL B-24798 | Isolate | Rhizosphere |
| 51 | 2784132148 | Streptomyces sp. E5N91 SAI-083 | Isolate | Unclassified |
| 52 | 2784746768 | Streptomyces griseorubiginosus SAI-142 | Isolate | Unclassified |
| 53 | 2808606359 | Streptomyces sp. RJA2910 | Isolate | Unclassified |
| 54 | 2808606448 | Streptomyces sp. 193411 | Isolate | Unclassified |
| 55 | 2808606982 | Streptomyces sp. SLBN-118 | Isolate | Unclassified |
| 56 | 2811994879 | Streptomyces sp. 4-17 | Isolate | Unclassified |
| 57 | 2811994917 | Streptomyces sp. SLBN-134 | Isolate | Unclassified |
| 58 | 2816332119 | Kribbella amoyensis DSM 24683 | Isolate | Rhizosphere |
| 59 | 2852635781 | Streptomyces sp. AK010 | Isolate | Rhizosphere |
| 60 | 2862290372 | Streptomyces triticagri NEAU-YY421 | Isolate | Rhizosphere |
| 61 | 2862507626 | Streptomyces sp. NWU339 | Isolate | Unclassified |
| 62 | 2862574272 | Streptomyces sp. AcE210 | Isolate | Nodule |
| 63 | 2863067949 | Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) | Isolate | Rhizosphere |
| 64 | 2866552031 | Saccharopolyspora rhizosphaerae H219 | Isolate | Unclassified |
| 65 | 2866612099 | Amycolatopsis suaedae 8-3EHSu | Isolate | Unclassified |
| 66 | 2867428634 | Streptomyces sp. RP5T | Isolate | Unclassified |
| 67 | 2867475112 | Streptomyces sp. TM32 | Isolate | Unclassified |
| 68 | 2875391855 | Streptomyces cavourensis 1AS2a | Isolate | Rhizosphere |
| 69 | 2877676314 | Streptomyces griseorubiginosus 3E-1 | Isolate | Unclassified |
| 70 | 2915768154 | Amycolatopsis pittospori PIP199 | Isolate | Unclassified |
| 71 | 2917736166 | Amycolatopsis dendrobii DR6-1 | Isolate | Unclassified |
| 72 | 2918501144 | Streptomyces sp. PvR006 | Isolate | Rhizosphere |
| 73 | 2919468124 | Streptomyces sp. 3330 | Isolate | Rhizosphere |
| 74 | 2935390628 | Streptomyces sp. PvR034 | Isolate | Rhizosphere |
| 75 | 2946045630 | Streptomyces sp. W4I9-2 | Isolate | Rhizosphere |
| 76 | 2946064051 | Streptomyces luteogriseus W4I19-1 | Isolate | Rhizosphere |
| 77 | 2946072368 | Streptomyces achromogenes W4I19-2 | Isolate | Rhizosphere |
| 78 | 2947224130 | Streptomyces afghaniensis W1I20 | Isolate | Rhizosphere |
| 79 | 2954002825 | Streptomyces turgidiscabies W2I16 | Isolate | Rhizosphere |
| 80 | 2954380949 | Streptomyces ciscaucasicus W1I15 | Isolate | Rhizosphere |
| 81 | 2954673503 | Streptomyces sp. SAI-119 | Isolate | Rhizosphere |
| 82 | 2954682443 | Streptomyces sp. SAI-149 | Isolate | Rhizosphere |
| 83 | 2954691527 | Streptomyces sp. SAI-127 | Isolate | Rhizosphere |
| 84 | 2954701450 | Streptomyces sp. SAI-144 | Isolate | Rhizosphere |
| 85 | 2954711539 | Streptomyces sp. SAI-090 | Isolate | Rhizosphere |
| 86 | 2954721474 | Streptomyces sp. SAI-117 | Isolate | Rhizosphere |
| 87 | 2954731030 | Streptomyces sp. SAI-133 | Isolate | Rhizosphere |
| 88 | 2954740390 | Streptomyces sp. SAI-041 | Isolate | Rhizosphere |
| 89 | 2954749733 | Streptomyces sp. SAI-135 | Isolate | Rhizosphere |
| 90 | 2954759201 | Streptomyces sp. SAI-208 | Isolate | Rhizosphere |
| 91 | 2966598605 | Kitasatospora papulosa SLBN-177 | Isolate | Rhizosphere |
| 92 | 2990059506 | Streptomyces sp. CAP261 | Isolate | Unclassified |
| 93 | 2990088156 | Streptomyces albidus CAP 215 | Isolate | Unclassified |
| 94 | 2997451912 | Streptomyces piniterrae jys28 | Isolate | Rhizosphere |
| 95 | 3006321560 | Actinacidiphila epipremni PRB2-1 | Isolate | Unclassified |
| 96 | 3006393351 | Streptomyces sp. SID4985 | Isolate | Unclassified |
| 97 | 3006486233 | Streptomyces sp. BR123 | Isolate | Rhizosphere |
| 98 | 8008558824 | Streptomyces scabiei NRRL B-2795 | Isolate | Nodule |
| 99 | 8025413630 | Streptomyces sp. CAI-17 | Isolate | Rhizosphere |
| 100 | 8025530807 | Streptomyces sp. 4R-3d | Isolate | Unclassified |
| 101 | 8047710418 | Umezawaea endophytica DSM 103496 | Isolate | Unclassified |
| 102 | 8056207758 | Saccharopolyspora indica KCTC 29208 | Isolate | Rhizosphere |
| 103 | 8056447290 | Streptomyces huiliensis SCA2-4 | Isolate | Rhizosphere |
| 104 | 8056667051 | Streptomyces sichuanensis SCA3-4 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 41.28 |
| Metatranscriptomes | 0 |
| Isolates | 58.72 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 2.75 |
| Nodule | 1.83 |
| Rhizoplane | 0.92 |
| Rhizosphere | 64.22 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0070714_100175416 | 3300005435 | Bacteria | 1948 |
| 2 | Ga0070713_100219326 | 3300005436 | Bacteria | 1725 |
| 3 | Ga0070684_100373632 | 3300005535 | Bacteria | 1313 |
| 4 | Ga0081539_10000214 | 3300005985 | Bacteria | 135110 |
| 5 | Ga0183367_1003 | 3300015688 | Bacteria | 814276 |
| 6 | Ga0207426_1016393 | 3300025302 | Bacteria | 2661 |
| 7 | Ga0207426_1019988 | 3300025302 | Bacteria | 2334 |
| 8 | Ga0207687_10573748 | 3300025927 | Bacteria | 948 |
| 9 | Ga0207700_10135059 | 3300025928 | Bacteria | 2019 |
| 10 | Ga0207700_10278386 | 3300025928 | Bacteria | 1438 |
| 11 | Ga0207664_10150021 | 3300025929 | Bacteria | 1980 |
| 12 | Ga0207679_10106959 | 3300025945 | Bacteria | 2200 |
| 13 | Ga0307515_10057057 | 3300028794 | Bacteria | 5659 |
| 14 | Ga0307511_10060021 | 3300030521 | Bacteria | 2916 |
| 15 | Ga0307513_10064511 | 3300031456 | Bacteria | 3859 |
| 16 | Ga0307508_10007544 | 3300031616 | Bacteria | 10101 |
| 17 | Ga0307514_10049109 | 3300031649 | Bacteria | 3283 |
| 18 | Ga0307416_100313161 | 3300032002 | Bacteria | 1567 |
| 19 | Ga0307507_10073354 | 3300033179 | Bacteria | 3077 |
| 20 | Ga0307507_10121444 | 3300033179 | Bacteria | 2088 |
| 21 | Ga0466969_0072369 | 3300044656 | Bacteria | 1656 |
| 22 | Ga0466966_0006971 | 3300044684 | Bacteria | 7480 |
| 23 | Ga0466971_0174637 | 3300044719 | Bacteria | 1009 |
| 24 | Ga0466968_0135410 | 3300044735 | Bacteria | 1123 |
| 25 | Ga0466957_0157595 | 3300044842 | Bacteria | 1473 |
| 26 | Ga0466960_0032038 | 3300044901 | Bacteria | 2430 |
| 27 | Ga0466959_0101074 | 3300045049 | Bacteria | 2064 |
| 28 | Ga0466967_0015197 | 3300045976 | Bacteria | 6028 |
| 29 | Ga0495629_0019815 | 3300046459 | Bacteria | 4801 |
| 30 | Ga0495629_0183373 | 3300046459 | Bacteria | 1450 |
| 31 | Ga0495582_0120191 | 3300046473 | Bacteria | 1480 |
| 32 | Ga0495639_0218028 | 3300046475 | Bacteria | 937 |
| 33 | Ga0495662_0009351 | 3300046476 | Bacteria | 4808 |
| 34 | Ga0495635_0111737 | 3300046663 | Bacteria | 1866 |
| 35 | Ga0495588_0195857 | 3300046674 | Bacteria | 1067 |
| 36 | Ga0495657_0001424 | 3300046675 | Bacteria | 20694 |
| 37 | Ga0495613_0035836 | 3300046689 | Bacteria | 3680 |
| 38 | Ga0495600_0263032 | 3300046809 | Bacteria | 1095 |
| 39 | Ga0496106_0045881 | 3300048909 | Bacteria | 3284 |
| 40 | Ga0501047_0064367 | 3300049581 | Bacteria | 3536 |
| 41 | Ga0501070_0548821 | 3300049586 | Bacteria | 925 |
| 42 | Ga0501035_0279229 | 3300049822 | Bacteria | 1412 |
| 43 | Ga0501035_0529595 | 3300049822 | Bacteria | 967 |
| 44 | Ga0501044_0095498 | 3300049823 | Bacteria | 2995 |
| 45 | Ga0500573_0131347 | 3300053140 | Bacteria | 1387 |
| 46 | 2912764494 | 2912757875 | Bacteria | 7940295 |
| 47 | 2585306549 | 2582581313 | Bacteria | 10042643 |
| 48 | 2616902980 | 2616644941 | Bacteria | 8510691 |
| 49 | 2643944299 | 2643221587 | Bacteria | 7586415 |
| 50 | 2644263401 | 2643221647 | Bacteria | 10741251 |
| 51 | 2644406163 | 2643221673 | Bacteria | 9196637 |
| 52 | 2644431144 | 2643221677 | Bacteria | 7584031 |
| 53 | 2644460177 | 2643221682 | Bacteria | 6743283 |
| 54 | 2768646581 | 2767802112 | Bacteria | 6465194 |
| 55 | 2776372857 | 2775506925 | Bacteria | 7237746 |
| 56 | 2784586372 | 2784132148 | Bacteria | 8627943 |
| 57 | 2785366644 | 2784746768 | Bacteria | 10036182 |
| 58 | 2808847169 | 2808606359 | Bacteria | 9866990 |
| 59 | 2809229872 | 2808606448 | Bacteria | 8656184 |
| 60 | 2811842750 | 2808606982 | Bacteria | 7791042 |
| 61 | 2812360788 | 2811994879 | Bacteria | 9313447 |
| 62 | 2812482719 | 2811994917 | Bacteria | 7761064 |
| 63 | 2816426536 | 2816332119 | Bacteria | 8120218 |
| 64 | 2852639476 | 2852635781 | Bacteria | 8251373 |
| 65 | 2862293026 | 2862290372 | Bacteria | 7471434 |
| 66 | 2862516106 | 2862507626 | Bacteria | 9425308 |
| 67 | 2862580790 | 2862574272 | Bacteria | 10567477 |
| 68 | 2863075574 | 2863067949 | Bacteria | 8541735 |
| 69 | 2866553532 | 2866552031 | Bacteria | 5824618 |
| 70 | 2866617777 | 2866612099 | Bacteria | 7543886 |
| 71 | 2867428759 | 2867428634 | Bacteria | 9590268 |
| 72 | 2867480843 | 2867475112 | Bacteria | 6909112 |
| 73 | 2875392773 | 2875391855 | Bacteria | 7600475 |
| 74 | 2877683907 | 2877676314 | Bacteria | 9512378 |
| 75 | 2915770442 | 2915768154 | Bacteria | 8424322 |
| 76 | 2917743750 | 2917736166 | Bacteria | 9690793 |
| 77 | 2918508143 | 2918501144 | Bacteria | 8668083 |
| 78 | 2919469967 | 2919468124 | Bacteria | 9133025 |
| 79 | 2935394804 | 2935390628 | Bacteria | 7043367 |
| 80 | 2946051938 | 2946045630 | Bacteria | 8527308 |
| 81 | 2946065083 | 2946064051 | Bacteria | 8957905 |
| 82 | 2946073513 | 2946072368 | Bacteria | 8999607 |
| 83 | 2947232342 | 2947224130 | Bacteria | 9938529 |
| 84 | 2954008419 | 2954002825 | Bacteria | 9173742 |
| 85 | 2954389188 | 2954380949 | Bacteria | 10050426 |
| 86 | 2954673856 | 2954673503 | Bacteria | 9685905 |
| 87 | 2954690136 | 2954682443 | Bacteria | 9862841 |
| 88 | 2954699966 | 2954691527 | Bacteria | 10720516 |
| 89 | 2954702252 | 2954701450 | Bacteria | 10834262 |
| 90 | 2954718808 | 2954711539 | Bacteria | 10867210 |
| 91 | 2954728777 | 2954721474 | Bacteria | 10456478 |
| 92 | 2954733033 | 2954731030 | Bacteria | 10243860 |
| 93 | 2954747677 | 2954740390 | Bacteria | 10229294 |
| 94 | 2954751913 | 2954749733 | Bacteria | 10366972 |
| 95 | 2954766799 | 2954759201 | Bacteria | 9358192 |
| 96 | 2966604306 | 2966598605 | Bacteria | 7676064 |
| 97 | 2990061416 | 2990059506 | Bacteria | 9321252 |
| 98 | 2990091586 | 2990088156 | Bacteria | 6657676 |
| 99 | 2997452085 | 2997451912 | Bacteria | 8492419 |
| 100 | 3006325437 | 3006321560 | Bacteria | 8247479 |
| 101 | 3006395703 | 3006393351 | Bacteria | 6615579 |
| 102 | 3006488837 | 3006486233 | Bacteria | 8157040 |
| 103 | 8008561402 | 8008558824 | Bacteria | 10610750 |
| 104 | 8025418802 | 8025413630 | Bacteria | 7014048 |
| 105 | 8025534993 | 8025530807 | Bacteria | 8495698 |
| 106 | 8047710519 | 8047710418 | Bacteria | 11023148 |
| 107 | 8056211666 | 8056207758 | Bacteria | 8639239 |
| 108 | 8056451078 | 8056447290 | Bacteria | 7680491 |
| 109 | 8056670185 | 8056667051 | Bacteria | 6953971 |
| 110 | Ga0070714_100175416 | |||
| 111 | Ga0070713_100219326 | |||
| 112 | Ga0070684_100373632 | |||
| 113 | Ga0081539_10000214 | |||
| 114 | Ga0183367_1003 | |||
| 115 | Ga0207426_1016393 | |||
| 116 | Ga0207426_1019988 | |||
| 117 | Ga0207687_10573748 | |||
| 118 | Ga0207700_10135059 | |||
| 119 | Ga0207700_10278386 | |||
| 120 | Ga0207664_10150021 | |||
| 121 | Ga0207679_10106959 | |||
| 122 | Ga0307515_10057057 | |||
| 123 | Ga0307511_10060021 | |||
| 124 | Ga0307513_10064511 | |||
| 125 | Ga0307508_10007544 | |||
| 126 | Ga0307514_10049109 | |||
| 127 | Ga0307416_100313161 | |||
| 128 | Ga0307507_10073354 | |||
| 129 | Ga0307507_10121444 | |||
| 130 | Ga0466969_0072369 | |||
| 131 | Ga0466966_0006971 | |||
| 132 | Ga0466971_0174637 | |||
| 133 | Ga0466968_0135410 | |||
| 134 | Ga0466957_0157595 | |||
| 135 | Ga0466960_0032038 | |||
| 136 | Ga0466959_0101074 | |||
| 137 | Ga0466967_0015197 | |||
| 138 | Ga0495629_0019815 | |||
| 139 | Ga0495629_0183373 | |||
| 140 | Ga0495582_0120191 | |||
| 141 | Ga0495639_0218028 | |||
| 142 | Ga0495662_0009351 | |||
| 143 | Ga0495635_0111737 | |||
| 144 | Ga0495588_0195857 | |||
| 145 | Ga0495657_0001424 | |||
| 146 | Ga0495613_0035836 | |||
| 147 | Ga0495600_0263032 | |||
| 148 | Ga0496106_0045881 | |||
| 149 | Ga0501047_0064367 | |||
| 150 | Ga0501070_0548821 | |||
| 151 | Ga0501035_0279229 | |||
| 152 | Ga0501035_0529595 | |||
| 153 | Ga0501044_0095498 | |||
| 154 | Ga0500573_0131347 | |||
| 155 | 2912764494 | |||
| 156 | 2585306549 | |||
| 157 | 2616902980 | |||
| 158 | 2643944299 | |||
| 159 | 2644263401 | |||
| 160 | 2644406163 | |||
| 161 | 2644431144 | |||
| 162 | 2644460177 | |||
| 163 | 2768646581 | |||
| 164 | 2776372857 | |||
| 165 | 2784586372 | |||
| 166 | 2785366644 | |||
| 167 | 2808847169 | |||
| 168 | 2809229872 | |||
| 169 | 2811842750 | |||
| 170 | 2812360788 | |||
| 171 | 2812482719 | |||
| 172 | 2816426536 | |||
| 173 | 2852639476 | |||
| 174 | 2862293026 | |||
| 175 | 2862516106 | |||
| 176 | 2862580790 | |||
| 177 | 2863075574 | |||
| 178 | 2866553532 | |||
| 179 | 2866617777 | |||
| 180 | 2867428759 | |||
| 181 | 2867480843 | |||
| 182 | 2875392773 | |||
| 183 | 2877683907 | |||
| 184 | 2915770442 | |||
| 185 | 2917743750 | |||
| 186 | 2918508143 | |||
| 187 | 2919469967 | |||
| 188 | 2935394804 | |||
| 189 | 2946051938 | |||
| 190 | 2946065083 | |||
| 191 | 2946073513 | |||
| 192 | 2947232342 | |||
| 193 | 2954008419 | |||
| 194 | 2954389188 | |||
| 195 | 2954673856 | |||
| 196 | 2954690136 | |||
| 197 | 2954699966 | |||
| 198 | 2954702252 | |||
| 199 | 2954718808 | |||
| 200 | 2954728777 | |||
| 201 | 2954733033 | |||
| 202 | 2954747677 | |||
| 203 | 2954751913 | |||
| 204 | 2954766799 | |||
| 205 | 2966604306 | |||
| 206 | 2990061416 | |||
| 207 | 2990091586 | |||
| 208 | 2997452085 | |||
| 209 | 3006325437 | |||
| 210 | 3006395703 | |||
| 211 | 3006488837 | |||
| 212 | 8008561402 | |||
| 213 | 8025418802 | |||
| 214 | 8025534993 | |||
| 215 | 8047710519 | |||
| 216 | 8056211666 | |||
| 217 | 8056451078 | |||
| 218 | 8056670185 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 7xro-assembly1.cif.gz_C | lysr-family transcriptional regulator ripr effector binding domain with its effector, 3-phenylpropionic acid | 0.8081 | 8 | 192 |
| 7w08-assembly2.cif.gz_B | itaconate inducible lysr-type transcriptional regulator (itcr) in apo form, space group p1. | 0.797 | 9 | 192 |
| 2h9b-assembly1.cif.gz_A | crystal structure of the effector binding domain of a benm variant (benm r156h/t157s) | 0.7913 | 9 | 193 |
| 3glb-assembly2.cif.gz_C | crystal structure of the effector binding domain of a catm variant (r156h) | 0.7768 | 7 | 193 |
| 1i69-assembly1.cif.gz_B | crystal structure of the reduced form of oxyr | 0.7628 | 6 | 195 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 2f7cA01 | Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II | 0.8913 | 7 | 75 | 3.40.190.10 |
| 5b7dB01 | Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II | 0.8392 | 9 | 75 | 3.40.190.10 |
| 1iz1B02 | Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II | 0.8368 | 8 | 74 | 3.40.190.10 |
| 2ql3D01 | Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II | 0.8303 | 9 | 74 | 3.40.190.10 |
| 1i69B01 | Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II | 0.8246 | 6 | 75 | 3.40.190.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7Y9MJ24-F1-model_v4 | DNA-binding transcriptional LysR family regulator | 0.9225 | 6 | 199 |
GO:0003677
GO:0003700 GO:0032993 |
| AF-A0A4V2JS67-F1-model_v4 | LysR family transcriptional regulator | 0.9089 | 10 | 204 |
GO:0003677
GO:0003700 GO:0032993 |
| AF-A0A7K2A2H1-F1-model_v4 | LysR family transcriptional regulator | 0.8979 | 9 | 192 |
GO:0003677
GO:0003700 GO:0032993 |
| AF-A0A4V2JS67-F1-model_v4 | LysR family transcriptional regulator | 0.8945 | 10 | 204 |
GO:0003677
GO:0003700 GO:0032993 |
| AF-A0A1P8YF92-F1-model_v4 | LysR substrate binding domain protein | 0.8888 | 1 | 218 |
GO:0003677
GO:0003700 GO:0032993 |