F056589

General Info

Members Datasets Scaffolds Average Seq Length
109 92 218 336

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2808606448|2809235228
Length 360
Sequence PVPNSPKVNTGSMRTPRLRVLALAAALLLGLTACGGQDDDTTSDGSAAAAGAPGQFPVTIEHALGTTVVPDKPKRVATVNWANDEVPLALGVVPVGMAKANFGDDDGDGVLPWTEKRLKELDAKTPVLFDETDGIDFEAVADTRPDVILAAYSGLTAQDYETLSEIAPVVAYPEAAWATPWRDIIRLNSKAIGLADEGDELIGDLEGRITETAAKYPQIKGKSAMFMTHVSSKDVSEVGFYTTHDTRTQFFTDLGMKIPASVSGPSKDTKKFVLTKSAERIDDFNDVDIVTGYGDDKGELLAALENDPLTSKLTAVKQGSIYLLPGSSPLATAANPTPLSIPYVLDDYVKALAAAADKAA

Samples

Sample ID Description Type Environment
1 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
2 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
3 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
4 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
5 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
6 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
7 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
8 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
9 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
10 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
11 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
12 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
13 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
14 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
15 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
16 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
17 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
18 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
19 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
20 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
21 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
22 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
23 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
24 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
25 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
26 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
27 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
28 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
29 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
30 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
31 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
32 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
33 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
34 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
35 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
36 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
37 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
38 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
39 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
40 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
41 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
42 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
43 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
44 2808606448 Streptomyces sp. 193411 Isolate Unclassified
45 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
46 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
47 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
48 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
49 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
50 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
51 2643221548 Streptomyces sp. Root55 Isolate Unclassified
52 2643221575 Microbacterium sp. Root61 Isolate Unclassified
53 2643221578 Streptomyces sp. Root63 Isolate Unclassified
54 2643221630 Microbacterium sp. Root322 Isolate Unclassified
55 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
56 2654587600 Glutamicibacter halophytocola KLBMP5180 Isolate Unclassified
57 2751185725 Microbispora sp. NRRL B-24597 Isolate Unclassified
58 2751185792 Kitasatospora arboriphila NRRL B-24581 Isolate Unclassified
59 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
60 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
61 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
62 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
63 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
64 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
65 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
66 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
67 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
68 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
69 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
70 2867369537 Streptomyces sp. Z26 Isolate Unclassified
71 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
72 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
73 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
74 2922554459 Rhodococcus sp. 66b Isolate Unclassified
75 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
76 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
77 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
78 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
79 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
80 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
81 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
82 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
83 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
84 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
85 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
86 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
87 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
88 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
89 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
90 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
91 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
92 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 55.05
Metatranscriptomes 0
Isolates 44.95

Biome Distribution

Category Percentage (%)
Aerial Root 1.83
Bulb 0
Endosphere 28.44
Nodule 0
Rhizoplane 2.75
Rhizosphere 36.7
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1002544 3300002738 Bacteria 4608
2 Ga0075365_10002376 3300006038 Bacteria 9194
3 Ga0075365_10125728 3300006038 Bacteria 1772
4 Ga0075368_10010765 3300006042 Bacteria 3314
5 Ga0075363_100000958 3300006048 Bacteria 10243
6 Ga0075363_100092173 3300006048 Bacteria 1669
7 Ga0075364_10007661 3300006051 Bacteria 6421
8 Ga0075364_10013709 3300006051 Bacteria 4992
9 Ga0075364_10041398 3300006051 Bacteria 2992
10 Ga0075364_10083922 3300006051 Bacteria 2109
11 Ga0075362_10005899 3300006177 Bacteria 4522
12 Ga0075362_10026612 3300006177 Bacteria 2472
13 Ga0075367_10003366 3300006178 Bacteria 7607
14 Ga0075367_10037200 3300006178 Bacteria 2827
15 Ga0157369_10066732 3300013105 Bacteria 3870
16 Ga0209646_1000085 3300025246 Bacteria 197351
17 Ga0209673_1002763 3300025273 Bacteria 11468
18 Ga0207658_10316740 3300025986 Bacteria 1349
19 Ga0307405_10086714 3300031731 Bacteria 2061
20 Ga0307406_10001715 3300031901 Bacteria 12044
21 Ga0307416_100648370 3300032002 Bacteria 1140
22 Ga0307415_100269581 3300032126 Bacteria 1394
23 Ga0451853_1407356 3300041512 Bacteria 1486
24 Ga0451853_2447864 3300041512 Bacteria 3457
25 Ga0466965_0042030 3300044683 Bacteria 2253
26 Ga0466970_0036827 3300044765 Bacteria 2592
27 Ga0466970_0037288 3300044765 Bacteria 2577
28 Ga0466957_0109447 3300044842 Bacteria 1751
29 Ga0466960_0016883 3300044901 Bacteria 3174
30 Ga0466960_0053227 3300044901 Bacteria 1961
31 Ga0495650_0071607 3300046471 Bacteria 1359
32 Ga0495654_0000369 3300046530 Bacteria 39001
33 Ga0495668_0000167 3300046616 Bacteria 97427
34 Ga0496108_0110823 3300048911 Bacteria 2347
35 Ga0496111_0001989 3300048914 Bacteria 12152
36 Ga0496119_0018907 3300048922 Bacteria 5102
37 Ga0496124_0237582 3300048927 Bacteria 1357
38 Ga0496126_0026764 3300048929 Bacteria 5523
39 Ga0496126_0027855 3300048929 Bacteria 5390
40 Ga0501034_0001300 3300049571 Bacteria 33769
41 Ga0501070_0177796 3300049586 Bacteria 1752
42 Ga0501074_0072139 3300049590 Bacteria 2481
43 Ga0501080_0135636 3300049742 Bacteria 2278
44 nmdc:mga03683_12017_c1 3300050489 Bacteria 3150
45 nmdc:mga03683_99531_c1 3300050489 Bacteria 1276
46 nmdc:mga03n38_12960_c1 3300050490 Bacteria 3154
47 nmdc:mga03n38_7173_c1 3300050490 Bacteria 3926
48 nmdc:mga00v17_100366_c1 3300050491 Bacteria 1826
49 nmdc:mga00v17_16834_c1 3300050491 Bacteria 4127
50 nmdc:mga0yw44_46444_c1 3300050492 Bacteria 2608
51 nmdc:mga06z11_15503_c1 3300050494 Bacteria 3403
52 nmdc:mga04h51_3418_c1 3300050495 Bacteria 3860
53 nmdc:mga07m45_103580_c1 3300050496 Bacteria 1636
54 nmdc:mga07m45_4491_c1 3300050496 Bacteria 6830
55 Ga0500644_0000054 3300053088 Bacteria 69110
56 Ga0500618_000090 3300053125 Bacteria 74320
57 Ga0500573_0004924 3300053140 Bacteria 7084
58 Ga0500573_0005847 3300053140 Bacteria 6612
59 Ga0500573_0023883 3300053140 Bacteria 3513
60 Ga0500577_0018171 3300053142 Bacteria 2255
61 2809235228 2808606448 Bacteria 8656184
62 2515720978 2515154129 Bacteria 5584369
63 2515757249 2515154137 Bacteria 5711575
64 2555228879 2554235227 Bacteria 3637389
65 2566994552 2565956761 Bacteria 6601618
66 2599718229 2599185236 Bacteria 6875203
67 2643734319 2643221542 Bacteria 3563959
68 2643761591 2643221548 Bacteria 8053412
69 2643885194 2643221575 Bacteria 4022601
70 2643898890 2643221578 Bacteria 9213798
71 2644172436 2643221630 Bacteria 3601215
72 2644403550 2643221673 Bacteria 9196637
73 2655033344 2654587600 Bacteria 3911798
74 2753036658 2751185725 Bacteria 5740550
75 2753324528 2751185792 Bacteria 5739090
76 2774393717 2773857762 Bacteria 5971770
77 2804848913 2802429296 Bacteria 7227771
78 2852643897 2852643534 Bacteria 3013378
79 2852649469 2852646457 Bacteria 3408613
80 2852679649 2852677369 Bacteria 3768884
81 2857721715 2857720070 Bacteria 3189373
82 2857725617 2857723135 Bacteria 4217853
83 2857732438 2857729791 Bacteria 4040535
84 2857736319 2857733635 Bacteria 3532004
85 2862295767 2862290372 Bacteria 7471434
86 2862708936 2862705112 Bacteria 6563286
87 2867374745 2867369537 Bacteria 6501581
88 2875392210 2875391855 Bacteria 7600475
89 2897562661 2897561785 Bacteria 3256946
90 2904536080 2904535858 Bacteria 6308016
91 2922555896 2922554459 Bacteria 6683962
92 2928122777 2928121344 Bacteria 3972376
93 2939657679 2939657138 Bacteria 3740283
94 2945970111 2945968032 Bacteria 4111363
95 2946042484 2946041624 Bacteria 4191385
96 2946052680 2946045630 Bacteria 8527308
97 2956940019 2956939328 Bacteria 3474458
98 2984579025 2984576629 Bacteria 4248407
99 2990048878 2990044586 Bacteria 6603797
100 2990260344 2990256926 Bacteria 4252839
101 8004183058 8004182704 Bacteria 3391155
102 8004215276 8004212874 Bacteria 2861420
103 8008488540 8008485437 Bacteria 7198341
104 8025417526 8025413630 Bacteria 7014048
105 8025525063 8025524527 Bacteria 7197316
106 8025537008 8025530807 Bacteria 8495698
107 8047711996 8047710418 Bacteria 11023148
108 8055038403 8055037949 Bacteria 3337834
109 8056209914 8056207758 Bacteria 8639239
110 JGI25154J39366_1002544
111 Ga0075365_10002376
112 Ga0075365_10125728
113 Ga0075368_10010765
114 Ga0075363_100000958
115 Ga0075363_100092173
116 Ga0075364_10007661
117 Ga0075364_10013709
118 Ga0075364_10041398
119 Ga0075364_10083922
120 Ga0075362_10005899
121 Ga0075362_10026612
122 Ga0075367_10003366
123 Ga0075367_10037200
124 Ga0157369_10066732
125 Ga0209646_1000085
126 Ga0209673_1002763
127 Ga0207658_10316740
128 Ga0307405_10086714
129 Ga0307406_10001715
130 Ga0307416_100648370
131 Ga0307415_100269581
132 Ga0451853_1407356
133 Ga0451853_2447864
134 Ga0466965_0042030
135 Ga0466970_0036827
136 Ga0466970_0037288
137 Ga0466957_0109447
138 Ga0466960_0016883
139 Ga0466960_0053227
140 Ga0495650_0071607
141 Ga0495654_0000369
142 Ga0495668_0000167
143 Ga0496108_0110823
144 Ga0496111_0001989
145 Ga0496119_0018907
146 Ga0496124_0237582
147 Ga0496126_0026764
148 Ga0496126_0027855
149 Ga0501034_0001300
150 Ga0501070_0177796
151 Ga0501074_0072139
152 Ga0501080_0135636
153 nmdc:mga03683_12017_c1
154 nmdc:mga03683_99531_c1
155 nmdc:mga03n38_12960_c1
156 nmdc:mga03n38_7173_c1
157 nmdc:mga00v17_100366_c1
158 nmdc:mga00v17_16834_c1
159 nmdc:mga0yw44_46444_c1
160 nmdc:mga06z11_15503_c1
161 nmdc:mga04h51_3418_c1
162 nmdc:mga07m45_103580_c1
163 nmdc:mga07m45_4491_c1
164 Ga0500644_0000054
165 Ga0500618_000090
166 Ga0500573_0004924
167 Ga0500573_0005847
168 Ga0500573_0023883
169 Ga0500577_0018171
170 2809235228
171 2515720978
172 2515757249
173 2555228879
174 2566994552
175 2599718229
176 2643734319
177 2643761591
178 2643885194
179 2643898890
180 2644172436
181 2644403550
182 2655033344
183 2753036658
184 2753324528
185 2774393717
186 2804848913
187 2852643897
188 2852649469
189 2852679649
190 2857721715
191 2857725617
192 2857732438
193 2857736319
194 2862295767
195 2862708936
196 2867374745
197 2875392210
198 2897562661
199 2904536080
200 2922555896
201 2928122777
202 2939657679
203 2945970111
204 2946042484
205 2946052680
206 2956940019
207 2984579025
208 2990048878
209 2990260344
210 8004183058
211 8004215276
212 8008488540
213 8025417526
214 8025525063
215 8025537008
216 8047711996
217 8055038403
218 8056209914

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01497

Peripla_BP_2

Periplasmic binding protein

76

327

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4hmq-assembly1.cif.gz_A crystal structure of streptococcus pneumoniae tigr4 piaa in complex with ferrichrome 0.9549 31 326
4hmp-assembly2.cif.gz_B crystal structure of iron uptake abc transporter substrate-binding protein piaa from streptococcus pneumoniae tigr4 0.9502 31 326
4hmp-assembly1.cif.gz_A crystal structure of iron uptake abc transporter substrate-binding protein piaa from streptococcus pneumoniae tigr4 0.9478 31 326
4hmp-assembly2.cif.gz_B crystal structure of iron uptake abc transporter substrate-binding protein piaa from streptococcus pneumoniae tigr4 0.9407 31 326
4hmp-assembly1.cif.gz_A crystal structure of iron uptake abc transporter substrate-binding protein piaa from streptococcus pneumoniae tigr4 0.9383 31 326
ID Description Score Start End Superfamily
4hmpB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.9745 31 166 3.40.50.1980
4hmpB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.967 31 166 3.40.50.1980
4hmpB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.9134 168 326 3.40.50.1980
4hmpB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.8971 168 326 3.40.50.1980
4mdyA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.8777 26 165 3.40.50.1980
ID Description Score Start End GO Terms
AF-A0A6G3XUK5-F1-model_v4 ABC transporter substrate-binding protein 0.994 45 143 GO:0030288
GO:1901678
AF-A0A6G3XUK5-F1-model_v4 ABC transporter substrate-binding protein 0.984 45 143 GO:0030288
GO:1901678
AF-A0A5S4GRV5-F1-model_v4 Iron-siderophore ABC transporter substrate-binding protein 0.9755 31 326 GO:0030288
GO:1901678
AF-A0A6G3CZN8-F1-model_v4 ABC transporter substrate-binding protein 0.9721 67 326 GO:0030288
GO:1901678
AF-A0A4Q3HPJ1-F1-model_v4 deleted 0.9697 29 327

Map