F051458

General Info

Members Datasets Scaffolds Average Seq Length
108 80 216 505

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2956897341|2956898707
Length 594
Sequence INLQPEANSTLEEILGIQYKGNYASVFAQGQGSPVGEFSLLKISFLFIEASFIANNERNGRGDSMKLFKGFGHQTEENKPTEGERTNHTPIPLDENLVSNMKKIRAAFAKSSDIVIREVVVGNKYKRRLVLIYTDGLVNTQVIDESILEPLTVHMEEKFDDIQTQSAEKVFQFLYTSVVASGGIKSVKDFSELFVEVLSGNTVILTEDYHKALSISTPGWKDRGVGETEVQNVIRGSREAFSETIRTNTALVRRRIKDENLCCEQQILGRKTKTTIVIMYIQGVVEEGVIQEVKERLGRIDIDGILESGYIEEMIQDESLTPFPTVYNTERPDVVAANLLEGRVAILVDGTPFVLLVPAIFGQFFQAPEDYYQRPDIATLIRIIRYASFFIALLGPSLYIAVTTFHQEMLPTQLLISLAAQREGVPFPAFVEACVMEVTFEILREAGIRMPRPMGQATSIVGALVIGQSAVEAGFISAAMVIVVSVTAISNFVFPAYDMAISVRMLRFVMMMFAASFGLFGITMALLALVLHLCSLRSFGVPYMSAFAPFDRAGQKDMIMRAPLWSIRKRPSMLTKRNKIRNTTPKPEKPGPTD

Samples

Sample ID Description Type Environment
1 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
2 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
3 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
4 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
5 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
6 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
7 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
8 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
9 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
10 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
11 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
12 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
13 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
14 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
15 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
16 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
17 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
18 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
19 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
20 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
21 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
22 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
23 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
24 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
25 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
26 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
27 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
28 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
29 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
30 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
31 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
32 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
33 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
34 2956897341 Ectobacillus funiculus W18-2 Isolate Rhizosphere
35 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
36 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
37 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
38 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
39 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
40 2643221732 Bacillus sp. Root239 Isolate Unclassified
41 2818991441 Niallia circulans 3243 Isolate Rhizosphere
42 2818991459 Paenibacillus sp. 597 Isolate Unclassified
43 2818991465 Priestia megaterium 3291 Isolate Rhizosphere
44 2842882022 Bacillus sp. R-71893 Isolate Unclassified
45 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
46 2857472729 Cohnella sp. R-74144 Isolate Unclassified
47 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
48 2881644220 Siminovitchia terrae LMG 29736 Isolate Rhizosphere
49 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
50 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
51 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
52 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
53 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
54 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
55 2919143609 Priestia megaterium 1751 Isolate Rhizosphere
56 2919414237 Neobacillus niacini 3240 Isolate Rhizosphere
57 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
58 2919517244 Priestia aryabhattai 3820 Isolate Unclassified
59 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
60 2928093941 Priestia aryabhattai 1389 Isolate Rhizosphere
61 2929297113 Heliophilum fasciatum MTM Isolate Rhizosphere
62 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
63 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
64 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
65 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
66 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
67 2977254563 Bacillus sp. SORGH_AS 510 Isolate Unclassified
68 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
69 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
70 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
71 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
72 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
73 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere
74 2990275345 Bacillus sp. SLBN-46 Isolate Unclassified
75 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
76 3006969106 Bacillus sp. FJAT-50079 Isolate Rhizosphere
77 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
78 8022893055 Bacillus aryabhattai AFS007213 Isolate Unclassified
79 8022914991 Bacillus aryabhattai SQU-R12 Isolate Unclassified
80 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 32.41
Metatranscriptomes 0
Isolates 67.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.26
Nodule 0
Rhizoplane 11.11
Rhizosphere 40.74
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10005517 3300003187 Bacteria 6517
2 JGI25151J46595_10007145 3300003187 Bacteria 5504
3 Ga0055528_1005665 3300003790 Bacteria 5762
4 Ga0055541_1002901 3300003841 Bacteria 3314
5 Ga0105246_10055366 3300011119 Bacteria 2737
6 Ga0209784_100098 3300025224 Bacteria 103150
7 Ga0209566_100127 3300025225 Bacteria 94021
8 Ga0209147_100110 3300025229 Bacteria 146408
9 Ga0209673_1004366 3300025273 Bacteria 7615
10 Ga0209675_1013404 3300025291 Bacteria 2566
11 Ga0209025_1002348 3300025294 Bacteria 20383
12 Ga0207696_1004778 3300025711 Bacteria 5761
13 Ga0207655_1015371 3300025728 Bacteria 4259
14 Ga0209371_1003181 3300027312 Bacteria 8306
15 Ga0268256_1001373 3300030500 Bacteria 14799
16 Ga0307408_100035737 3300031548 Bacteria 3488
17 Ga0307405_10077364 3300031731 Bacteria 2162
18 Ga0496100_0001145 3300048903 Bacteria 12882
19 Ga0496102_0011753 3300048905 Bacteria 7555
20 Ga0496104_0002999 3300048907 Bacteria 14546
21 Ga0496105_0020526 3300048908 Bacteria 5339
22 Ga0496106_0003896 3300048909 Bacteria 11135
23 Ga0496107_0003547 3300048910 Bacteria 10447
24 Ga0496109_0016157 3300048912 Bacteria 6523
25 Ga0496110_0018411 3300048913 Bacteria 5857
26 Ga0496110_0088320 3300048913 Bacteria 2768
27 Ga0496111_0001487 3300048914 Bacteria 13421
28 Ga0496112_0011486 3300048915 Bacteria 8089
29 Ga0496113_0000757 3300048916 Bacteria 16621
30 Ga0496116_0128976 3300048919 Bacteria 1446
31 Ga0496119_0001604 3300048922 Bacteria 26877
32 Ga0496122_0008659 3300048925 Bacteria 10918
33 Ga0496123_0009629 3300048926 Bacteria 8671
34 Ga0496125_0019425 3300048928 Bacteria 6409
35 Ga0496126_0008371 3300048929 Bacteria 11161
36 2956898707 2956897341 Bacteria 5447711
37 2512730351 2512564039 Bacteria 8739048
38 2512734505 2512564039 Bacteria 8739048
39 2524188565 2524023129 Bacteria 6762600
40 2524191252 2524023129 Bacteria 6762600
41 2587737497 2585428059 Bacteria 8696589
42 2595318668 2593339198 Bacteria 7267884
43 2595320267 2593339198 Bacteria 7267884
44 2644425741 2643221676 Bacteria 8119172
45 2644427513 2643221676 Bacteria 8119172
46 2644722061 2643221732 Bacteria 5756404
47 2819568359 2818991441 Bacteria 5062707
48 2819670882 2818991459 Bacteria 8736032
49 2819671784 2818991459 Bacteria 8736032
50 2819673580 2818991459 Bacteria 8736032
51 2819708241 2818991465 Bacteria 5388835
52 2842885453 2842882022 Bacteria 6158489
53 2857454299 2857453340 Bacteria 8090534
54 2857475658 2857472729 Bacteria 6568124
55 2857476997 2857472729 Bacteria 6568124
56 2865002069 2864997549 Bacteria 5139696
57 2881649224 2881644220 Bacteria 5302661
58 2888580168 2888578766 Bacteria 6743310
59 2888584386 2888578766 Bacteria 6743310
60 2889054382 2889049205 Bacteria 7524325
61 2889296614 2889295896 Bacteria 4704906
62 2889296886 2889295896 Bacteria 4704906
63 2904115750 2904113452 Bacteria 7796941
64 2904119126 2904113452 Bacteria 7796941
65 2904119892 2904113452 Bacteria 7796941
66 2904598172 2904595352 Bacteria 6124848
67 2904758699 2904755435 Bacteria 7986759
68 2904759835 2904755435 Bacteria 7986759
69 2919148034 2919143609 Bacteria 6219228
70 2919418575 2919414237 Bacteria 5429133
71 2919425887 2919425241 Bacteria 8055701
72 2919427916 2919425241 Bacteria 8055701
73 2919429029 2919425241 Bacteria 8055701
74 2919521001 2919517244 Bacteria 5858162
75 2925331845 2925326138 Bacteria 9652120
76 2928097695 2928093941 Bacteria 5965005
77 2929298180 2929297113 Bacteria 3141306
78 2936365779 2936361878 Bacteria 5632809
79 2936366655 2936361878 Bacteria 5632809
80 2956900877 2956897341 Bacteria 5447711
81 2956901172 2956897341 Bacteria 5447711
82 2960322458 2960319331 Bacteria 5502575
83 2960376331 2960375949 Bacteria 5361395
84 2960381361 2960375949 Bacteria 5361395
85 2971408944 2971403814 Bacteria 7370929
86 2971415253 2971410472 Bacteria 8311090
87 2971415619 2971410472 Bacteria 8311090
88 2977257954 2977254563 Bacteria 4828420
89 2980125885 2980125574 Bacteria 5567337
90 2980186462 2980182181 Bacteria 9454109
91 2981285082 2981284811 Bacteria 4641497
92 2981285360 2981284811 Bacteria 4641497
93 2981290027 2981289755 Bacteria 4641509
94 2981290305 2981289755 Bacteria 4641509
95 2981981065 2981980479 Bacteria 4641628
96 2981981339 2981980479 Bacteria 4641628
97 2981985953 2981985349 Bacteria 4641497
98 2981986231 2981985349 Bacteria 4641497
99 2990278979 2990275345 Bacteria 4887158
100 3001893054 3001892409 Bacteria 6328293
101 3001894513 3001892409 Bacteria 6328293
102 3001898412 3001892409 Bacteria 6328293
103 3006973218 3006969106 Bacteria 4739423
104 8002321030 8002317523 Bacteria 8051857
105 8022897539 8022893055 Bacteria 5300455
106 8022915792 8022914991 Bacteria 5584517
107 8056537833 8056533031 Bacteria 8964429
108 8056540689 8056533031 Bacteria 8964429
109 JGI25151J46595_10005517
110 JGI25151J46595_10007145
111 Ga0055528_1005665
112 Ga0055541_1002901
113 Ga0105246_10055366
114 Ga0209784_100098
115 Ga0209566_100127
116 Ga0209147_100110
117 Ga0209673_1004366
118 Ga0209675_1013404
119 Ga0209025_1002348
120 Ga0207696_1004778
121 Ga0207655_1015371
122 Ga0209371_1003181
123 Ga0268256_1001373
124 Ga0307408_100035737
125 Ga0307405_10077364
126 Ga0496100_0001145
127 Ga0496102_0011753
128 Ga0496104_0002999
129 Ga0496105_0020526
130 Ga0496106_0003896
131 Ga0496107_0003547
132 Ga0496109_0016157
133 Ga0496110_0018411
134 Ga0496110_0088320
135 Ga0496111_0001487
136 Ga0496112_0011486
137 Ga0496113_0000757
138 Ga0496116_0128976
139 Ga0496119_0001604
140 Ga0496122_0008659
141 Ga0496123_0009629
142 Ga0496125_0019425
143 Ga0496126_0008371
144 2956898707
145 2512730351
146 2512734505
147 2524188565
148 2524191252
149 2587737497
150 2595318668
151 2595320267
152 2644425741
153 2644427513
154 2644722061
155 2819568359
156 2819670882
157 2819671784
158 2819673580
159 2819708241
160 2842885453
161 2857454299
162 2857475658
163 2857476997
164 2865002069
165 2881649224
166 2888580168
167 2888584386
168 2889054382
169 2889296614
170 2889296886
171 2904115750
172 2904119126
173 2904119892
174 2904598172
175 2904758699
176 2904759835
177 2919148034
178 2919418575
179 2919425887
180 2919427916
181 2919429029
182 2919521001
183 2925331845
184 2928097695
185 2929298180
186 2936365779
187 2936366655
188 2956900877
189 2956901172
190 2960322458
191 2960376331
192 2960381361
193 2971408944
194 2971415253
195 2971415619
196 2977257954
197 2980125885
198 2980186462
199 2981285082
200 2981285360
201 2981290027
202 2981290305
203 2981981065
204 2981981339
205 2981985953
206 2981986231
207 2990278979
208 3001893054
209 3001894513
210 3001898412
211 3006973218
212 8002321030
213 8022897539
214 8022915792
215 8056537833
216 8056540689

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03323

GerA

Bacillus/Clostridium GerA spore germination protein

102

573

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
6o59-assembly3.cif.gz_B crystal structure of the n-terminal domain of the a subunit of the bacillus megaterium spore germinant receptor gerk3 0.8282 149 247
6o59-assembly3.cif.gz_A crystal structure of the n-terminal domain of the a subunit of the bacillus megaterium spore germinant receptor gerk3 0.7996 1 247
6o59-assembly3.cif.gz_A crystal structure of the n-terminal domain of the a subunit of the bacillus megaterium spore germinant receptor gerk3 0.7731 1 247
6o59-assembly3.cif.gz_B crystal structure of the n-terminal domain of the a subunit of the bacillus megaterium spore germinant receptor gerk3 0.6528 149 247
7yyh-assembly1.cif.gz_N structure of the human ccandeltat cenp-a alpha-satellite complex 0.4416 150 243
ID Description Score Start End Superfamily
af_Q9LVB8_11_326_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.6567 170 191 3.40.50.1820
af_K7KVS1_25_276_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.6103 18 52 3.40.50.1820
af_Q6YSZ8_17_324_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.6075 24 48 3.40.50.1820
af_A0A0R0H3H8_17_305_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.5891 25 53 3.40.50.1820
af_A0A0R0KWG6_523_785_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.5826 171 230 3.40.50.1820
ID Description Score Start End GO Terms
AF-A0A3D3FG22-F1-model_v4 Spore germination protein 0.9057 1 197 GO:0009847
GO:0016020
AF-A0A4U3B2M8-F1-model_v4 Spore germination protein 0.8887 1 198 GO:0009847
GO:0016020
AF-A0A5C8MSZ0-F1-model_v4 Spore germination protein 0.8885 1 197 GO:0009847
GO:0016020
AF-A0A7C6WE29-F1-model_v4 Spore germination protein 0.8869 4 196 GO:0009847
GO:0016020
AF-U2FF80-F1-model_v4 GerA spore germination protein 0.8811 2 198 GO:0009847
GO:0016020

Map