F046043

General Info

Members Datasets Scaffolds Average Seq Length
107 103 56 250

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2988225383|2988227105
Length 283
Sequence FASSCLQVADVKRSNQIHAENELEAEEMMEYTVQKLGALAGISTRTLRYYDEFGILKPARINSSGYRIYGQAEVDRLQQILFYRELGLSLEGIKELVTAPSFDGVQALREHHEKLLQRRQQLDTLILNVERTLAQAEGRITMSNEEKFAGFKQKLIDDNEQKYGQEIRSKYGDDAVDQSNRKLGNMTEEQYAAVQQLEEEMFESLEQAMEQGDSASELAQKAADLHRQWLTFYWDTYSKEAHAGVAQMYVDDERFTAYYDKTRPGLARFLRDAVHVYTGAKQE

Samples

Sample ID Description Type Environment
1 2510917027 Brevibacillus sp. CF112 Isolate Rhizosphere
2 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
3 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
4 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
5 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
6 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
7 2593339131 Bacillus sp. UNCCL81 Isolate Unclassified
8 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
9 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
10 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
11 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
12 2738541295 Bacillus sp. OK085 Isolate Unclassified
13 2738541299 Paenisporosarcina sp. OV554 Isolate Unclassified
14 2738543010 Bacillus sp. YR335 Isolate Unclassified
15 2757320391 Bacillus sp. NFR08 Isolate Rhizoplane
16 2775507177 Bacillus sp. AFS055030 Isolate Unclassified
17 2775507192 Bacillus sp. AFS041924 Isolate Unclassified
18 2818991441 Niallia circulans 3243 Isolate Rhizosphere
19 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
20 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
21 2857472729 Cohnella sp. R-74144 Isolate Unclassified
22 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
23 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
24 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
25 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
26 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
27 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
28 2919414237 Neobacillus niacini 3240 Isolate Rhizosphere
29 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
30 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
31 2936340661 Gottfriedia acidiceleris 1-17 Isolate Rhizosphere
32 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
33 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
34 2956897341 Ectobacillus funiculus W18-2 Isolate Rhizosphere
35 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
36 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
37 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
38 2977254563 Bacillus sp. SORGH_AS 510 Isolate Unclassified
39 2980176882 Paenibacillus apii 7028 Isolate Rhizosphere
40 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
41 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
42 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
43 3006973921 Bacillus sp. FJAT-49736 Isolate Rhizosphere
44 3006978542 Bacillus sp. FJAT-49705 Isolate Rhizosphere
45 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
46 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
47 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
50 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
51 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
55 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
56 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
57 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
58 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
59 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
60 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
61 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
62 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
63 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
64 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
65 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
66 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
67 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
68 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
69 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
70 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
71 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
72 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
73 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
74 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
75 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
76 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
77 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
78 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
79 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
80 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
81 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
82 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
83 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
84 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
85 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
86 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
87 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
88 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
89 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
90 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
91 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
92 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
93 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
94 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
95 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
96 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
97 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
98 8007371054 Clostridium sp. YIM B02515 Isolate Unclassified
99 8007375930 Clostridium sp. YIM B02565 Isolate Unclassified
100 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
101 8054280661 Metabacillus kandeliae GX 13764 Isolate Rhizosphere
102 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
103 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 52.34
Metatranscriptomes 0
Isolates 47.66

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.54
Nodule 0.93
Rhizoplane 7.48
Rhizosphere 61.68
Stem 0
Stem Tuber 0
Unclassified 23.36

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055532_1002687 3300003758 Bacteria 3493
2 Ga0055541_1001238 3300003841 Bacteria 5634
3 Ga0055541_1002534 3300003841 Bacteria 3622
4 Ga0065704_10189593 3300005289 Bacteria 1196
5 Ga0105243_10497443 3300009148 Bacteria 1154
6 Ga0157371_10021078 3300013102 Bacteria 4790
7 Ga0157374_10174413 3300013296 Unclassified 2099
8 Ga0209566_100180 3300025225 Bacteria 67946
9 Ga0209566_100921 3300025225 Bacteria 13720
10 Ga0209147_100045 3300025229 Bacteria 299264
11 Ga0207709_10386408 3300025935 Bacteria 1066
12 Ga0466969_0056428 3300044656 Bacteria 1917
13 Ga0453683_0399691 3300044673 Bacteria 886
14 Ga0466961_0245084 3300044693 Bacteria 1101
15 Ga0453684_0167082 3300044712 Bacteria 2596
16 Ga0466968_0023763 3300044735 Bacteria 2500
17 Ga0495592_0026135 3300046454 Bacteria 4429
18 Ga0495651_0004670 3300046462 Bacteria 10481
19 Ga0495653_0004709 3300046463 Bacteria 11044
20 Ga0495580_0113928 3300046472 Bacteria 1878
21 Ga0495662_0004281 3300046476 Bacteria 7175
22 Ga0495664_0006580 3300046477 Bacteria 6423
23 Ga0495608_0003192 3300046511 Bacteria 11729
24 Ga0495628_0017627 3300046516 Bacteria 5936
25 Ga0495666_0005315 3300046526 Bacteria 6491
26 Ga0495652_0030064 3300046529 Bacteria 4766
27 Ga0495665_0002688 3300046531 Bacteria 9586
28 Ga0495640_0011837 3300046533 Bacteria 6692
29 Ga0495587_0065484 3300046536 Bacteria 2121
30 Ga0495645_0015014 3300046543 Bacteria 5503
31 Ga0495645_0052262 3300046543 Bacteria 2973
32 Ga0495667_0016092 3300046559 Bacteria 5055
33 Ga0495634_0304624 3300046642 Bacteria 962
34 Ga0495635_0084495 3300046663 Bacteria 2171
35 Ga0495657_0132604 3300046675 Bacteria 1559
36 Ga0495646_0009296 3300046680 Bacteria 6235
37 Ga0495613_0020699 3300046689 Bacteria 4904
38 Ga0495649_0177533 3300046694 Bacteria 1112
39 Ga0495600_0047859 3300046809 Bacteria 2789
40 Ga0495581_0020732 3300047315 Bacteria 3811
41 Ga0495604_0002595 3300047317 Bacteria 14484
42 Ga0495674_0109868 3300047319 Bacteria 2338
43 Ga0495675_0004209 3300047444 Bacteria 8706
44 Ga0495675_0240226 3300047444 Bacteria 1090
45 Ga0495593_0010836 3300047673 Bacteria 5257
46 Ga0495602_0087288 3300048088 Bacteria 2600
47 Ga0496100_0045988 3300048903 Bacteria 2804
48 Ga0496101_0529869 3300048904 Bacteria 931
49 Ga0496106_0553284 3300048909 Bacteria 923
50 Ga0496107_0205524 3300048910 Bacteria 1464
51 Ga0496112_0191452 3300048915 Bacteria 2007
52 Ga0496113_0055367 3300048916 Bacteria 2973
53 Ga0496116_0140086 3300048919 Bacteria 1362
54 Ga0495601_0043104 3300053077 Bacteria 2834
55 Ga0495619_0024931 3300053085 Bacteria 3837
56 Ga0500573_0063622 3300053140 Bacteria 2111

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013102 Ga0157371_10021078 Ga0157371_100210783 220
2 3300005289 Ga0065704_10189593 Ga0065704_101895931 224
3 iso_pu_bacteria 2857591370 2857593237 224
4 iso_pu_bacteria 2896085136 2896087505 224
5 3300003841 Ga0055541_1001238 Ga0055541_10012384 225
6 3300025225 Ga0209566_100180 Ga0209566_1001807 225
7 iso_pu_bacteria 2571042143 2571531450 225
8 iso_pu_bacteria 2576861424 2578335422 225
9 iso_pu_bacteria 2881636855 2881639809 225
10 iso_pu_bacteria 2980176882 2980178384 225
11 iso_pu_bacteria 8057632132 8057634699 225
12 iso_pu_bacteria 8046991243 8046993016 226
13 iso_pu_bacteria 2510917027 2511179453 227
14 iso_pu_bacteria 2512564013 2512635819 227
15 iso_pu_bacteria 2915597211 2915602567 227
16 iso_pu_bacteria 2915606848 2915612013 227
17 iso_pu_bacteria 2929183550 2929187730 227
18 iso_pu_bacteria 8054280661 8054281722 227
19 3300046694 Ga0495649_0177533 Ga0495649_0177533_281_1045 228
20 iso_pu_bacteria 2857465823 2857471897 228
21 iso_pu_bacteria 2971410472 2971416726 228
22 iso_pu_bacteria 2980182181 2980183239 228
23 iso_pu_bacteria 8002317523 8002320854 228
24 iso_pu_bacteria 8007371054 8007374788 228
25 3300044693 Ga0466961_0245084 Ga0466961_0245084_298_1062 229
26 3300044735 Ga0466968_0023763 Ga0466968_0023763_1195_1959 229
27 3300046543 Ga0495645_0052262 Ga0495645_0052262_2063_2833 229
28 3300047444 Ga0495675_0004209 Ga0495675_0004209_6873_7643 229
29 iso_pu_bacteria 2548877040 2550900292 229
30 iso_pu_bacteria 2585428059 2587738985 229
31 iso_pu_bacteria 2593339131 2595087550 229
32 iso_pu_bacteria 2600255286 2601640027 229
33 iso_pu_bacteria 2643221676 2644427482 229
34 iso_pu_bacteria 2728368933 2728530137 229
35 iso_pu_bacteria 2738541295 2738817254 229
36 iso_pu_bacteria 2738541299 2738838610 229
37 iso_pu_bacteria 2738543010 2739230628 229
38 iso_pu_bacteria 2757320391 2757568101 229
39 iso_pu_bacteria 2775507177 2777761556 229
40 iso_pu_bacteria 2775507192 2777838538 229
41 iso_pu_bacteria 2818991441 2819570695 229
42 iso_pu_bacteria 2857460504 2857463148 229
43 iso_pu_bacteria 2857472729 2857476021 229
44 iso_pu_bacteria 2889049205 2889052910 229
45 iso_pu_bacteria 2919414237 2919415954 229
46 iso_pu_bacteria 2925326138 2925328530 229
47 iso_pu_bacteria 2936340661 2936341385 229
48 iso_pu_bacteria 2936361878 2936364504 229
49 iso_pu_bacteria 2956897341 2956899501 229
50 iso_pu_bacteria 2971403814 2971404111 229
51 iso_pu_bacteria 2977254563 2977258994 229
52 iso_pu_bacteria 3006973921 3006977466 229
53 iso_pu_bacteria 3006978542 3006981078 229
54 iso_pu_bacteria 8007375930 8007376541 229
55 iso_pu_bacteria 8054465665 8054466209 229
56 3300013296 Ga0157374_10174413 Ga0157374_101744132 230
57 3300044656 Ga0466969_0056428 Ga0466969_0056428_438_1202 230
58 3300046454 Ga0495592_0026135 Ga0495592_0026135_1718_2479 230
59 3300046462 Ga0495651_0004670 Ga0495651_0004670_3410_4171 230
60 3300046463 Ga0495653_0004709 Ga0495653_0004709_7066_7827 230
61 3300046472 Ga0495580_0113928 Ga0495580_0113928_500_1261 230
62 3300046476 Ga0495662_0004281 Ga0495662_0004281_3913_4674 230
63 3300046477 Ga0495664_0006580 Ga0495664_0006580_5571_6332 230
64 3300046511 Ga0495608_0003192 Ga0495608_0003192_8042_8803 230
65 3300046516 Ga0495628_0017627 Ga0495628_0017627_2791_3552 230
66 3300046526 Ga0495666_0005315 Ga0495666_0005315_4956_5717 230
67 3300046529 Ga0495652_0030064 Ga0495652_0030064_3081_3842 230
68 3300046531 Ga0495665_0002688 Ga0495665_0002688_8754_9515 230
69 3300046533 Ga0495640_0011837 Ga0495640_0011837_2918_3679 230
70 3300046536 Ga0495587_0065484 Ga0495587_0065484_308_1069 230
71 3300046543 Ga0495645_0015014 Ga0495645_0015014_3209_3970 230
72 3300046559 Ga0495667_0016092 Ga0495667_0016092_1912_2673 230
73 3300046642 Ga0495634_0304624 Ga0495634_0304624_180_941 230
74 3300046663 Ga0495635_0084495 Ga0495635_0084495_22_783 230
75 3300046675 Ga0495657_0132604 Ga0495657_0132604_619_1380 230
76 3300046680 Ga0495646_0009296 Ga0495646_0009296_1561_2322 230
77 3300046689 Ga0495613_0020699 Ga0495613_0020699_3525_4286 230
78 3300046809 Ga0495600_0047859 Ga0495600_0047859_1709_2470 230
79 3300047315 Ga0495581_0020732 Ga0495581_0020732_115_876 230
80 3300047317 Ga0495604_0002595 Ga0495604_0002595_4462_5223 230
81 3300047319 Ga0495674_0109868 Ga0495674_0109868_1433_2194 230
82 3300047444 Ga0495675_0240226 Ga0495675_0240226_22_783 230
83 3300047673 Ga0495593_0010836 Ga0495593_0010836_1536_2297 230
84 3300048088 Ga0495602_0087288 Ga0495602_0087288_925_1686 230
85 3300053077 Ga0495601_0043104 Ga0495601_0043104_377_1138 230
86 3300053085 Ga0495619_0024931 Ga0495619_0024931_2885_3646 230
87 3300053140 Ga0500573_0063622 Ga0500573_0063622_134_895 230
88 iso_pu_bacteria 2938649242 2938653013 230
89 iso_pu_bacteria 2968558590 2968558854 230
90 iso_pu_bacteria 2996632988 2996632998 230
91 3300009148 Ga0105243_10497443 Ga0105243_104974432 231
92 3300025935 Ga0207709_10386408 Ga0207709_103864081 231
93 3300044712 Ga0453684_0167082 Ga0453684_0167082_629_1390 232
94 iso_pu_bacteria 2619619294 2621273662 232
95 3300003758 Ga0055532_1002687 Ga0055532_10026873 233
96 3300003841 Ga0055541_1002534 Ga0055541_10025344 233
97 3300025225 Ga0209566_100921 Ga0209566_1009217 233
98 3300025229 Ga0209147_100045 Ga0209147_100045128 233
99 3300044673 Ga0453683_0399691 Ga0453683_0399691_35_820 233
100 3300048903 Ga0496100_0045988 Ga0496100_0045988_1017_1781 233
101 3300048904 Ga0496101_0529869 Ga0496101_0529869_118_882 233
102 3300048909 Ga0496106_0553284 Ga0496106_0553284_98_862 233
103 3300048910 Ga0496107_0205524 Ga0496107_0205524_40_804 233
104 3300048915 Ga0496112_0191452 Ga0496112_0191452_827_1591 233
105 3300048916 Ga0496113_0055367 Ga0496113_0055367_1175_1939 233
106 3300048919 Ga0496116_0140086 Ga0496116_0140086_204_968 233
107 iso_pu_bacteria 2988225383 2988227105 233

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07739

TipAS

TipAS antibiotic-recognition domain

163

277

0.99

PF13411

MerR_1

MerR HTH family regulatory protein

31

99

0.97

PF00376

MerR

MerR family regulatory protein

32

69

0.93

PF09278

MerR-DNA-bind

MerR, DNA binding

74

136

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
3qao-assembly1.cif.gz_A-2 the crystal structure of the n-terminal domain of a merr-like transcriptional regulator from listeria monocytogenes egd-e 0.9512 3 123
7tea-assembly2.cif.gz_C crystal structure of s. aureus glnr-dna complex 0.9145 3 67
2vz4-assembly1.cif.gz_A-2 the n-terminal domain of merr-like protein tipal bound to promoter dna 0.9108 3 104
7cla-assembly1.cif.gz_A-2 crystal structure of hth-type transcriptional regulator skga from caulobacter crescentus 0.9026 1 128
7tec-assembly1.cif.gz_A-2 structure of the listeria monocytogenes glnr-dna complex to 3.45 angstrom 0.8904 3 64
ID Description Score Start End Superfamily
3hh0D01 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.9325 1 71 1.10.1660.10
3hh0C01 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.9315 1 67 1.10.1660.10
3qaoA00 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.9291 6 123 1.10.1660.10
2vz4A00 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.9108 3 104 1.10.1660.10
3hh0D01 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.9086 1 71 1.10.1660.10
ID Description Score Start End GO Terms
AF-A0A0G0AB55-F1-model_v4 HTH merR-type domain-containing protein 0.9899 1 67 GO:0003677
GO:0003700
AF-A0A0B0HW67-F1-model_v4 deleted 0.982 1 75
AF-W4QBE4-F1-model_v4 Putative transcriptional regulator 0.978 136 231
AF-A0A359HHJ7-F1-model_v4 MerR family transcriptional regulator 0.9778 1 79 GO:0003677
GO:0003700
AF-W4QBE4-F1-model_v4 Putative transcriptional regulator 0.9681 136 231

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pLDDT pTM Quality
90.24 0.56 Medium
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Predicted Structure (AlphaFold2)

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