F045542

General Info

Members Datasets Scaffolds Average Seq Length
107 78 107 324

Family's Representative Sequence

Representative Sequence 3300049586|Ga0501070_0322288|Ga0501070_0322288_117_1154
Length 345
Sequence MIMQTKKRKKLLSVSDKTYDSLPKPFFVLAPMDDVTDTVFRQIVLDTHAPDLFFTEFVNVDGLMSPGRSKLLKKLKFVPEEKRLVAQLWGLKPENFKIIAEQIASGELAREMGLPDGCNFVGVDLNMGCPAKSEVQNGACSALIKLENRDLAEDIIEATREGLAGRLPLSVKTRLGFSQVDMTWFQFLLSKNLDMLTVHGRTRKEMSKVPAHWDLIGEVAKMCSRLAPQTLIVGNGDVDSHQQGVELAEKYGLDGIMVGRGIFHDPFVFSADSKWADYTRQQRIDLYKKQVSMFAETWPNKERNIQTLNKFCKVYINGFDGAKELREQLMKAGSADALLQILNAA

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
26 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
27 3300009986 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_92 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
30 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
31 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
35 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
54 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
55 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
56 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
57 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
58 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
59 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
60 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
61 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
64 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
65 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
66 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
67 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
68 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
69 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
70 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
71 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
72 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
73 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
74 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
75 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
76 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
77 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
78 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.76
Nodule 0
Rhizoplane 0
Rhizosphere 81.31
Stem 0
Stem Tuber 0
Unclassified 0.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10000311 3300003320 Bacteria 277677
2 Ga0070658_10000023 3300005327 Bacteria 185522
3 Ga0070658_10000867 3300005327 Bacteria 25848
4 Ga0070658_10060690 3300005327 Unclassified 3080
5 Ga0070676_10149394 3300005328 Bacteria 1494
6 Ga0070683_100319675 3300005329 Bacteria 1477
7 Ga0070690_100000608 3300005330 Bacteria 18106
8 Ga0070680_100003242 3300005336 Bacteria 12109
9 Ga0070682_100234314 3300005337 Bacteria 1314
10 Ga0070660_100143327 3300005339 Bacteria 1918
11 Ga0070674_100006252 3300005356 Bacteria 6932
12 Ga0070674_100353632 3300005356 Bacteria 1187
13 Ga0070673_100000407 3300005364 Bacteria 22729
14 Ga0070659_100075299 3300005366 Unclassified 2690
15 Ga0070667_100004243 3300005367 Bacteria 12104
16 Ga0070678_100000664 3300005456 Bacteria 16876
17 Ga0070678_100030724 3300005456 Bacteria 3696
18 Ga0070681_10019342 3300005458 Bacteria 6816
19 Ga0070685_10002941 3300005466 Bacteria 8706
20 Ga0070679_100001264 3300005530 Bacteria 22307
21 Ga0070679_100016916 3300005530 Bacteria 7050
22 Ga0070679_100022389 3300005530 Bacteria 6177
23 Ga0070686_100054896 3300005544 Unclassified 2550
24 Ga0068855_100000001 3300005563 Bacteria 818777
25 Ga0068855_100025278 3300005563 Bacteria 7109
26 Ga0068857_100021176 3300005577 Bacteria 5721
27 Ga0068857_100088204 3300005577 Bacteria 2775
28 Ga0068856_100000002 3300005614 Bacteria 372816
29 Ga0068856_100439237 3300005614 Bacteria 1325
30 Ga0081539_10022623 3300005985 Bacteria 4150
31 Ga0075367_10000210 3300006178 Bacteria 19498
32 Ga0075366_10000004 3300006195 Bacteria 111331
33 Ga0075366_10000146 3300006195 Bacteria 29802
34 Ga0105245_10001082 3300009098 Bacteria 24692
35 Ga0105245_10087792 3300009098 Bacteria 2855
36 Ga0105245_10340659 3300009098 Bacteria 1483
37 Ga0105241_10000009 3300009174 Bacteria 258876
38 Ga0105249_10363523 3300009553 Bacteria 1469
39 Ga0105033_100144 3300009986 Bacteria 5416
40 Ga0105239_10024820 3300010375 Bacteria 6604
41 Ga0105239_10445580 3300010375 Bacteria 1468
42 Ga0157369_10000054 3300013105 Bacteria 162631
43 Ga0157374_10000811 3300013296 Bacteria 27394
44 Ga0157378_10214448 3300013297 Bacteria 1827
45 Ga0157372_10007714 3300013307 Bacteria 11442
46 Ga0163163_10012972 3300014325 Bacteria 7612
47 Ga0157376_10000001 3300014969 Bacteria 842910
48 Ga0207647_10060146 3300025904 Bacteria 2323
49 Ga0207645_10187657 3300025907 Bacteria 1358
50 Ga0207705_10000129 3300025909 Bacteria 82827
51 Ga0207705_10003206 3300025909 Bacteria 12460
52 Ga0207705_10022310 3300025909 Unclassified 4515
53 Ga0207705_10044325 3300025909 Unclassified 3197
54 Ga0207654_10000002 3300025911 Bacteria 1460142
55 Ga0207707_10002359 3300025912 Bacteria 17010
56 Ga0207707_10129728 3300025912 Bacteria 2205
57 Ga0207660_10012422 3300025917 Bacteria 5572
58 Ga0207660_10024345 3300025917 Bacteria 4099
59 Ga0207657_10001171 3300025919 Bacteria 27817
60 Ga0207657_10395582 3300025919 Bacteria 1087
61 Ga0207652_10002314 3300025921 Bacteria 16145
62 Ga0207652_10007463 3300025921 Bacteria 8816
63 Ga0207687_10002841 3300025927 Bacteria 11754
64 Ga0207669_10003223 3300025937 Bacteria 7052
65 Ga0207669_10319654 3300025937 Bacteria 1187
66 Ga0207691_10016410 3300025940 Bacteria 7031
67 Ga0207661_10462765 3300025944 Bacteria 1156
68 Ga0207667_10000003 3300025949 Bacteria 822935
69 Ga0207651_10000365 3300025960 Bacteria 19174
70 Ga0207712_10279361 3300025961 Bacteria 1362
71 Ga0207702_10000001 3300026078 Bacteria 895738
72 Ga0207702_10381722 3300026078 Bacteria 1355
73 Ga0207674_10063820 3300026116 Unclassified 3716
74 Ga0207683_10047415 3300026121 Bacteria 3763
75 Ga0265319_1012226 3300028563 Unclassified 3478
76 Ga0265319_1029433 3300028563 Bacteria 1928
77 Ga0265338_10000758 3300028800 Bacteria 55090
78 Ga0265338_10197753 3300028800 Bacteria 1518
79 Ga0395899_0021185 3300037312 Bacteria 4931
80 Ga0395905_0000965 3300037471 Bacteria 36917
81 Ga0395905_0004287 3300037471 Bacteria 14873
82 Ga0395901_0442933 3300038443 Unclassified 1329
83 Ga0466967_0113366 3300045976 Bacteria 2494
84 Ga0495649_0000170 3300046694 Bacteria 57001
85 Ga0495672_0157097 3300047320 Unclassified 1173
86 Ga0501034_0167279 3300049571 Bacteria 2167
87 Ga0501037_0036485 3300049573 Bacteria 3623
88 Ga0501070_0322288 3300049586 Bacteria 1257
89 Ga0501080_0000016 3300049742 Bacteria 96392
90 Ga0501083_0144484 3300049744 Bacteria 1557
91 nmdc:mga0k408_11_c1 3300050493 Bacteria 130371
92 nmdc:mga0k408_16167_c1 3300050493 Bacteria 4137
93 nmdc:mga06z11_21_c1 3300050494 Bacteria 69936
94 Ga0500643_000009 3300053087 Bacteria 444150
95 Ga0500643_001010 3300053087 Bacteria 17186
96 Ga0500644_0017117 3300053088 Bacteria 2098
97 Ga0500583_0000105 3300053092 Bacteria 44085
98 Ga0500583_0024027 3300053092 Unclassified 2579
99 Ga0500562_000002 3300053108 Bacteria 977234
100 Ga0500594_0000070 3300053118 Bacteria 32225
101 Ga0500628_000018 3300053129 Bacteria 85560
102 Ga0500642_0027743 3300053130 Bacteria 2327
103 Ga0500589_000003 3300053147 Bacteria 220717
104 Ga0500570_001430 3300053724 Bacteria 11008
105 Ga0500611_000732 3300053727 Bacteria 3378
106 Ga0500611_002073 3300053727 Unclassified 2339
107 Ga0501084_0222614 3300054114 Unclassified 1592

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009098 Ga0105245_10087792 Ga0105245_100877922 297
2 3300005330 Ga0070690_100000608 Ga0070690_10000060815 300
3 3300005544 Ga0070686_100054896 Ga0070686_1000548962 300
4 3300025917 Ga0207660_10024345 Ga0207660_100243456 310
5 3300025921 Ga0207652_10002314 Ga0207652_1000231421 310
6 3300037471 Ga0395905_0000965 Ga0395905_0000965_915_1853 310
7 3300053092 Ga0500583_0000105 Ga0500583_0000105_40020_40982 310
8 3300053130 Ga0500642_0027743 Ga0500642_0027743_1107_2069 310
9 3300053147 Ga0500589_000003 Ga0500589_000003_216642_217604 310
10 3300005530 Ga0070679_100001264 Ga0070679_10000126410 312
11 3300028800 Ga0265338_10197753 Ga0265338_101977532 312
12 3300053724 Ga0500570_001430 Ga0500570_001430_2088_3032 312
13 3300013297 Ga0157378_10214448 Ga0157378_102144482 313
14 3300045976 Ga0466967_0113366 Ga0466967_0113366_34_981 313
15 3300053727 Ga0500611_000732 Ga0500611_000732_237_1184 313
16 3300005329 Ga0070683_100319675 Ga0070683_1003196751 314
17 3300005356 Ga0070674_100006252 Ga0070674_1000062528 314
18 3300005364 Ga0070673_100000407 Ga0070673_10000040716 314
19 3300005577 Ga0068857_100021176 Ga0068857_1000211767 314
20 3300010375 Ga0105239_10024820 Ga0105239_100248202 314
21 3300014325 Ga0163163_10012972 Ga0163163_100129722 314
22 3300025907 Ga0207645_10187657 Ga0207645_101876571 314
23 3300025909 Ga0207705_10000129 Ga0207705_1000012920 314
24 3300025937 Ga0207669_10003223 Ga0207669_100032232 314
25 3300025937 Ga0207669_10319654 Ga0207669_103196542 314
26 3300025940 Ga0207691_10016410 Ga0207691_100164108 314
27 3300025960 Ga0207651_10000365 Ga0207651_1000036512 314
28 3300026116 Ga0207674_10063820 Ga0207674_100638201 314
29 3300049742 Ga0501080_0000016 Ga0501080_0000016_46704_47654 314
30 3300054114 Ga0501084_0222614 Ga0501084_0222614_558_1508 314
31 3300005366 Ga0070659_100075299 Ga0070659_1000752993 315
32 3300005367 Ga0070667_100004243 Ga0070667_1000042434 315
33 3300005456 Ga0070678_100030724 Ga0070678_1000307244 315
34 3300005458 Ga0070681_10019342 Ga0070681_100193423 315
35 3300005563 Ga0068855_100000001 Ga0068855_100000001631 315
36 3300006195 Ga0075366_10000004 Ga0075366_1000000471 315
37 3300009553 Ga0105249_10363523 Ga0105249_103635232 315
38 3300025911 Ga0207654_10000002 Ga0207654_10000002256 315
39 3300025949 Ga0207667_10000003 Ga0207667_10000003619 315
40 3300025961 Ga0207712_10279361 Ga0207712_102793611 315
41 3300026121 Ga0207683_10047415 Ga0207683_100474153 315
42 3300028563 Ga0265319_1012226 Ga0265319_10122262 315
43 3300047320 Ga0495672_0157097 Ga0495672_0157097_123_1079 315
44 3300050493 nmdc:mga0k408_11_c1 nmdc:mga0k408_11_c1_24848_25798 315
45 3300053088 Ga0500644_0017117 Ga0500644_0017117_615_1571 315
46 3300053108 Ga0500562_000002 Ga0500562_000002_472037_472990 315
47 3300053118 Ga0500594_0000070 Ga0500594_0000070_23725_24681 315
48 3300053129 Ga0500628_000018 Ga0500628_000018_73954_74910 315
49 3300005985 Ga0081539_10022623 Ga0081539_100226233 316
50 3300025919 Ga0207657_10395582 Ga0207657_103955821 316
51 3300005327 Ga0070658_10000023 Ga0070658_1000002317 317
52 3300005328 Ga0070676_10149394 Ga0070676_101493942 317
53 3300005339 Ga0070660_100143327 Ga0070660_1001433271 317
54 3300005356 Ga0070674_100353632 Ga0070674_1003536321 317
55 3300005456 Ga0070678_100000664 Ga0070678_10000066413 317
56 3300005466 Ga0070685_10002941 Ga0070685_100029419 317
57 3300053087 Ga0500643_001010 Ga0500643_001010_4416_5408 318
58 3300053092 Ga0500583_0024027 Ga0500583_0024027_239_1231 318
59 3300053727 Ga0500611_002073 Ga0500611_002073_1164_2156 318
60 3300005614 Ga0068856_100000002 Ga0068856_100000002155 321
61 3300026078 Ga0207702_10000001 Ga0207702_10000001276 321
62 3300053087 Ga0500643_000009 Ga0500643_000009_356299_357270 322
63 3300005327 Ga0070658_10060690 Ga0070658_100606904 324
64 3300013296 Ga0157374_10000811 Ga0157374_1000081119 324
65 3300025909 Ga0207705_10022310 Ga0207705_100223104 324
66 3300025909 Ga0207705_10044325 Ga0207705_100443254 324
67 3300049571 Ga0501034_0167279 Ga0501034_0167279_623_1606 324
68 3300005337 Ga0070682_100234314 Ga0070682_1002343141 325
69 3300005577 Ga0068857_100088204 Ga0068857_1000882041 327
70 3300006178 Ga0075367_10000210 Ga0075367_1000021020 327
71 3300006195 Ga0075366_10000146 Ga0075366_1000014624 327
72 3300009098 Ga0105245_10340659 Ga0105245_103406592 327
73 3300009174 Ga0105241_10000009 Ga0105241_1000000920 327
74 3300013105 Ga0157369_10000054 Ga0157369_10000054157 327
75 3300025904 Ga0207647_10060146 Ga0207647_100601462 327
76 3300049586 Ga0501070_0322288 Ga0501070_0322288_117_1154 327
77 3300050493 nmdc:mga0k408_16167_c1 nmdc:mga0k408_16167_c1_2239_3231 327
78 3300050494 nmdc:mga06z11_21_c1 nmdc:mga06z11_21_c1_38253_39245 327
79 3300025912 Ga0207707_10002359 Ga0207707_1000235914 328
80 3300028800 Ga0265338_10000758 Ga0265338_1000075838 328
81 3300049573 Ga0501037_0036485 Ga0501037_0036485_2210_3217 328
82 3300009098 Ga0105245_10001082 Ga0105245_100010823 329
83 3300014969 Ga0157376_10000001 Ga0157376_10000001664 329
84 3300025927 Ga0207687_10002841 Ga0207687_1000284113 329
85 3300049744 Ga0501083_0144484 Ga0501083_0144484_75_1067 329
86 3300003320 rootH2_10000311 rootH2_10000311109 330
87 3300005327 Ga0070658_10000867 Ga0070658_1000086723 330
88 3300005336 Ga0070680_100003242 Ga0070680_1000032429 330
89 3300005530 Ga0070679_100016916 Ga0070679_1000169162 330
90 3300005530 Ga0070679_100022389 Ga0070679_1000223894 330
91 3300005563 Ga0068855_100025278 Ga0068855_1000252782 330
92 3300005614 Ga0068856_100439237 Ga0068856_1004392372 330
93 3300009986 Ga0105033_100144 Ga0105033_1001444 330
94 3300010375 Ga0105239_10445580 Ga0105239_104455802 330
95 3300013307 Ga0157372_10007714 Ga0157372_100077147 330
96 3300025909 Ga0207705_10003206 Ga0207705_100032069 330
97 3300025912 Ga0207707_10129728 Ga0207707_101297286 330
98 3300025917 Ga0207660_10012422 Ga0207660_100124229 330
99 3300025919 Ga0207657_10001171 Ga0207657_1000117116 330
100 3300025921 Ga0207652_10007463 Ga0207652_1000746311 330
101 3300025944 Ga0207661_10462765 Ga0207661_104627652 330
102 3300026078 Ga0207702_10381722 Ga0207702_103817222 330
103 3300028563 Ga0265319_1029433 Ga0265319_10294333 330
104 3300037312 Ga0395899_0021185 Ga0395899_0021185_3834_4838 330
105 3300037471 Ga0395905_0004287 Ga0395905_0004287_118_1122 330
106 3300038443 Ga0395901_0442933 Ga0395901_0442933_101_1105 330
107 3300046694 Ga0495649_0000170 Ga0495649_0000170_2789_3790 330

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01207

Dus

Dihydrouridine synthase (Dus)

28

345

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vhn-assembly1.cif.gz_A crystal structure of a putative flavin oxidoreductase with flavin 0.8542 10 329
1vhn-assembly1.cif.gz_A crystal structure of a putative flavin oxidoreductase with flavin 0.8412 10 329
4yco-assembly2.cif.gz_B e. coli dihydrouridine synthase c (dusc) in complex with trnaphe 0.8185 10 326
2b7n-assembly1.cif.gz_A crystal structure of quinolinic acid phosphoribosyltransferase from helicobacter pylori 0.8144 135 244
6ei9-assembly2.cif.gz_B crystal structure of e. coli trna-dihydrouridine synthase b (dusb) 0.8122 1 330
ID Description Score Start End Superfamily
af_Q2G1R3_1_230_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9583 16 254 3.20.20.70
af_Q2G1R3_1_230_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9419 16 254 3.20.20.70
af_Q86L21_10_254_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9361 8 253 3.20.20.70
af_Q86L21_10_254_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9101 8 253 3.20.20.70
af_Q9VIS4_253_495_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9037 8 259 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A2M7TZ24-F1-model_v4 DUS-like FMN-binding domain-containing protein 0.9873 80 325 GO:0003723
GO:0017150
AF-A0A0G0X5U8-F1-model_v4 tRNA-dihydrouridine synthase (EC 1.3.1.-) 0.9843 16 327 GO:0000049
GO:0017150
GO:0050660
AF-A0A0G0X5U8-F1-model_v4 tRNA-dihydrouridine synthase (EC 1.3.1.-) 0.9779 16 327 GO:0000049
GO:0017150
GO:0050660
AF-A0A0G1UM44-F1-model_v4 tRNA-dihydrouridine synthase (EC 1.3.1.-) 0.9758 1 326 GO:0000049
GO:0017150
GO:0050660
AF-A0A0G0PBF4-F1-model_v4 tRNA-dihydrouridine synthase 0.9743 4 85

Feature Viewer

pLDDT pTM Quality
92.67 0.91 High
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Predicted Structure (AlphaFold2)

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