F031207

General Info

Members Datasets Scaffolds Average Seq Length
105 74 97 308

Family's Representative Sequence

Representative Sequence 3300005614|Ga0068856_100000271|Ga0068856_10000027115
Length 344
Sequence MIKRTLHLSNPSYLSLKNGQLVIDRPDLNQLGEKDAKISRPIEDIGIVVLDHPQITITHGCIEALLNNNAAIIACNQSHQPAGMMLPIDGHGTQTERFGYQVEASAPLKKQLWQQTIQAKILNQAAVLAERGIEIDSMLYWARSVRSGDPDNYEGRAAAFYWRYVFSSNLKFLRDRNGEPPNNLLNYGYAILRAIMARCLVCAGLLPTLGIHHHNKYNAYCLADDVMEPYRPYVDKIVLAIVDNGEDFTELNASLKAQLLRIAEVNVLFGKNRSPLMVGVQNTAYSLAKCYEASGRKLLYPMMRNFDGRRITKYKTTEDNLMNLAAEDDAPYHKADESERKLPF

Samples

Sample ID Description Type Environment
1 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
2 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
3 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
4 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
5 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
6 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
7 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
8 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
9 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
10 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
11 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
12 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
13 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
14 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
23 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
24 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
25 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
26 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
27 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
28 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
29 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
30 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
31 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
33 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
39 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
40 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
41 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
42 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
43 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
44 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
49 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
50 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
51 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
52 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
53 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
54 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
55 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
56 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
57 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
58 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
59 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
60 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
61 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
62 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
63 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049708 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_A_3_control Metagenome Rhizosphere
72 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
73 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
74 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.38
Metatranscriptomes 0
Isolates 7.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.48
Nodule 1.9
Rhizoplane 0
Rhizosphere 73.33
Stem 0
Stem Tuber 0
Unclassified 14.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000256 3300001979 Bacteria 22585
2 JGI25157J39369_1004510 3300002741 Bacteria 2501
3 rootH2_10143491 3300003320 Bacteria 6732
4 rootH1_10106822 3300003323 Unclassified 2358
5 JGI25160J50197_1003767 3300003354 Bacteria 6674
6 Ga0055526_1005306 3300003771 Bacteria 7465
7 Ga0055530_10025434 3300003791 Bacteria 1654
8 Ga0070658_10000018 3300005327 Bacteria 200558
9 Ga0070678_100251119 3300005456 Bacteria 1483
10 Ga0070672_100363036 3300005543 Bacteria 1236
11 Ga0068855_100000054 3300005563 Bacteria 139322
12 Ga0068855_100089442 3300005563 Bacteria 3555
13 Ga0068856_100000271 3300005614 Bacteria 56548
14 Ga0068856_100005050 3300005614 Bacteria 13063
15 Ga0099824_1026994 3300006942 Bacteria 2854
16 Ga0105240_10510181 3300009093 Bacteria 1336
17 Ga0105240_10713296 3300009093 Unclassified 1094
18 Ga0105239_10000556 3300010375 Bacteria 53501
19 Ga0157370_10009590 3300013104 Bacteria 10306
20 Ga0157370_10026788 3300013104 Bacteria 5687
21 Ga0157372_10011954 3300013307 Bacteria 9248
22 Ga0157372_10168757 3300013307 Bacteria 2531
23 Ga0182008_10007237 3300014497 Bacteria 6136
24 Ga0182006_1000530 3300015261 Bacteria 28950
25 Ga0209436_100424 3300025208 Bacteria 18922
26 Ga0209026_1000421 3300025250 Bacteria 36014
27 Ga0209564_1001943 3300025295 Bacteria 18337
28 Ga0209758_1002169 3300025297 Bacteria 20634
29 Ga0209050_1003628 3300025298 Bacteria 11176
30 Ga0207426_1002442 3300025302 Bacteria 11863
31 Ga0207426_1003143 3300025302 Bacteria 9400
32 Ga0209257_1004268 3300025304 Bacteria 11274
33 Ga0207705_10000036 3300025909 Bacteria 200787
34 Ga0207695_10334973 3300025913 Bacteria 1401
35 Ga0207695_10605673 3300025913 Unclassified 976
36 Ga0207667_10000023 3300025949 Bacteria 362527
37 Ga0207667_10071181 3300025949 Bacteria 3617
38 Ga0207702_10000284 3300026078 Bacteria 58710
39 Ga0207702_10018905 3300026078 Bacteria 5700
40 Ga0209489_118535 3300027361 Bacteria 2681
41 Ga0265319_1000112 3300028563 Bacteria 62336
42 Ga0265323_10017303 3300028653 Bacteria 2800
43 Ga0265322_10051105 3300028654 Bacteria 1173
44 Ga0307515_10000007 3300028794 Bacteria 719669
45 Ga0307515_10001107 3300028794 Bacteria 61642
46 Ga0265324_10010256 3300029957 Bacteria 3621
47 Ga0265324_10013484 3300029957 Bacteria 3049
48 Ga0265339_10086411 3300031249 Bacteria 1650
49 Ga0265327_10000038 3300031251 Bacteria 292416
50 Ga0265327_10002644 3300031251 Bacteria 18450
51 Ga0265316_10008521 3300031344 Bacteria 9505
52 Ga0265316_10018363 3300031344 Bacteria 6012
53 Ga0265316_10024554 3300031344 Bacteria 5046
54 Ga0307408_100001095 3300031548 Bacteria 20703
55 Ga0307514_10244092 3300031649 Bacteria 1072
56 Ga0307412_10002225 3300031911 Bacteria 10773
57 Ga0307510_10002313 3300033180 Bacteria 21542
58 Ga0395899_0000037 3300037312 Bacteria 280224
59 Ga0395900_0312557 3300037418 Bacteria 1554
60 Ga0400483_070059 3300039062 Bacteria 1294
61 Ga0400483_219652 3300039062 Bacteria 7227
62 Ga0400483_282452 3300039062 Bacteria 9724
63 Ga0436365_1833663 3300039437 Bacteria 2373
64 Ga0451577_0001190 3300042876 Bacteria 36491
65 Ga0451577_0004352 3300042876 Bacteria 14999
66 Ga0451577_0071170 3300042876 Bacteria 3101
67 Ga0453683_0001308 3300044673 Bacteria 21964
68 Ga0453683_0207246 3300044673 Bacteria 1245
69 Ga0453684_0001007 3300044712 Bacteria 91242
70 Ga0453684_0003453 3300044712 Bacteria 35539
71 Ga0453684_0009939 3300044712 Bacteria 16418
72 Ga0453684_0024981 3300044712 Bacteria 8693
73 Ga0453684_0314341 3300044712 Bacteria 1776
74 Ga0451576_0000472 3300045051 Bacteria 91251
75 Ga0451576_0002912 3300045051 Bacteria 24386
76 Ga0451576_0004188 3300045051 Bacteria 18977
77 Ga0451576_0020507 3300045051 Bacteria 7194
78 Ga0451576_0153985 3300045051 Bacteria 2398
79 Ga0495627_005617 3300046453 Bacteria 5017
80 Ga0495633_0073825 3300046558 Bacteria 1590
81 Ga0495625_0119955 3300046660 Bacteria 1790
82 Ga0495687_001116 3300047443 Bacteria 26089
83 Ga0501032_0103559 3300049569 Unclassified 1886
84 Ga0501032_0232460 3300049569 Bacteria 1199
85 Ga0501033_0064653 3300049570 Unclassified 2692
86 Ga0501034_0009963 3300049571 Bacteria 9932
87 Ga0501034_0129633 3300049571 Bacteria 2506
88 Ga0501034_0271084 3300049571 Bacteria 1638
89 Ga0501036_0298531 3300049572 Bacteria 1347
90 Ga0501038_0184020 3300049574 Bacteria 1684
91 Ga0501039_0016920 3300049575 Bacteria 5589
92 Ga0501046_0279099 3300049580 Bacteria 1224
93 Ga0501047_0007885 3300049581 Bacteria 10039
94 Ga0501047_0306626 3300049581 Bacteria 1429
95 Ga0501245_007427 3300049708 Bacteria 1549
96 Ga0501083_0001071 3300049744 Bacteria 18259
97 Ga0500608_028644 3300053122 Bacteria 2629

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037418 Ga0395900_0312557 Ga0395900_0312557_53_874 270
2 3300028794 Ga0307515_10001107 Ga0307515_100011072 278
3 3300005456 Ga0070678_100251119 Ga0070678_1002511192 280
4 3300031251 Ga0265327_10000038 Ga0265327_10000038207 290
5 iso_pu_bacteria 8036736890 8036737713 290
6 iso_pu_bacteria 2904780799 2904784708 293
7 iso_pu_bacteria 2919692658 2919695811 293
8 3300039062 Ga0400483_282452 Ga0400483_282452_7969_8853 294
9 iso_pu_bacteria 2904467357 2904472373 294
10 3300039062 Ga0400483_070059 Ga0400483_070059_105_992 295
11 3300049571 Ga0501034_0129633 Ga0501034_0129633_1071_1961 295
12 iso_pu_bacteria 2895498888 2895500421 295
13 iso_pu_bacteria 2896085136 2896088771 295
14 iso_pu_bacteria 2929921140 2929927655 295
15 iso_pu_bacteria 2958512119 2958515348 295
16 3300037312 Ga0395899_0000037 Ga0395899_0000037_109521_110420 296
17 3300049570 Ga0501033_0064653 Ga0501033_0064653_321_1238 296
18 3300049571 Ga0501034_0009963 Ga0501034_0009963_7221_8138 296
19 3300049581 Ga0501047_0007885 Ga0501047_0007885_1915_2832 296
20 3300006942 Ga0099824_1026994 Ga0099824_10269942 297
21 3300027361 Ga0209489_118535 Ga0209489_1185352 297
22 3300028563 Ga0265319_1000112 Ga0265319_100011254 297
23 3300028653 Ga0265323_10017303 Ga0265323_100173032 297
24 3300028654 Ga0265322_10051105 Ga0265322_100511052 297
25 3300029957 Ga0265324_10013484 Ga0265324_100134842 297
26 3300031249 Ga0265339_10086411 Ga0265339_100864112 297
27 3300031344 Ga0265316_10008521 Ga0265316_100085213 297
28 3300031344 Ga0265316_10024554 Ga0265316_100245543 297
29 3300042876 Ga0451577_0071170 Ga0451577_0071170_266_1225 297
30 3300044712 Ga0453684_0024981 Ga0453684_0024981_933_1832 297
31 3300044712 Ga0453684_0314341 Ga0453684_0314341_457_1356 297
32 3300045051 Ga0451576_0002912 Ga0451576_0002912_18972_19871 297
33 3300045051 Ga0451576_0004188 Ga0451576_0004188_401_1360 297
34 3300003323 rootH1_10106822 rootH1_101068222 298
35 3300003354 JGI25160J50197_1003767 JGI25160J50197_10037672 298
36 3300003771 Ga0055526_1005306 Ga0055526_10053062 298
37 3300003791 Ga0055530_10025434 Ga0055530_100254342 298
38 3300005543 Ga0070672_100363036 Ga0070672_1003630361 298
39 3300009093 Ga0105240_10510181 Ga0105240_105101811 298
40 3300009093 Ga0105240_10713296 Ga0105240_107132961 298
41 3300010375 Ga0105239_10000556 Ga0105239_1000055611 298
42 3300013104 Ga0157370_10026788 Ga0157370_100267882 298
43 3300013307 Ga0157372_10168757 Ga0157372_101687571 298
44 3300025208 Ga0209436_100424 Ga0209436_1004246 298
45 3300025295 Ga0209564_1001943 Ga0209564_10019434 298
46 3300025297 Ga0209758_1002169 Ga0209758_10021697 298
47 3300025298 Ga0209050_1003628 Ga0209050_10036283 298
48 3300025302 Ga0207426_1002442 Ga0207426_10024429 298
49 3300025302 Ga0207426_1003143 Ga0207426_10031433 298
50 3300025304 Ga0209257_1004268 Ga0209257_10042682 298
51 3300025913 Ga0207695_10334973 Ga0207695_103349731 298
52 3300025913 Ga0207695_10605673 Ga0207695_106056731 298
53 3300029957 Ga0265324_10010256 Ga0265324_100102562 298
54 3300031251 Ga0265327_10002644 Ga0265327_100026448 298
55 3300031344 Ga0265316_10018363 Ga0265316_100183632 298
56 3300033180 Ga0307510_10002313 Ga0307510_100023137 298
57 3300039062 Ga0400483_219652 Ga0400483_219652_4320_5219 298
58 3300039437 Ga0436365_1833663 Ga0436365_1833663_531_1442 298
59 3300042876 Ga0451577_0001190 Ga0451577_0001190_34025_34927 298
60 3300042876 Ga0451577_0004352 Ga0451577_0004352_5230_6126 298
61 3300044673 Ga0453683_0001308 Ga0453683_0001308_2364_3278 298
62 3300044673 Ga0453683_0207246 Ga0453683_0207246_160_1062 298
63 3300044712 Ga0453684_0001007 Ga0453684_0001007_37246_38148 298
64 3300044712 Ga0453684_0003453 Ga0453684_0003453_24563_25459 298
65 3300044712 Ga0453684_0009939 Ga0453684_0009939_3629_4543 298
66 3300045051 Ga0451576_0000472 Ga0451576_0000472_37247_38149 298
67 3300045051 Ga0451576_0020507 Ga0451576_0020507_4023_4937 298
68 3300045051 Ga0451576_0153985 Ga0451576_0153985_34_930 298
69 3300049569 Ga0501032_0103559 Ga0501032_0103559_578_1510 298
70 3300049569 Ga0501032_0232460 Ga0501032_0232460_202_1113 298
71 3300049571 Ga0501034_0271084 Ga0501034_0271084_497_1402 298
72 3300049572 Ga0501036_0298531 Ga0501036_0298531_309_1220 298
73 3300049574 Ga0501038_0184020 Ga0501038_0184020_240_1151 298
74 3300049575 Ga0501039_0016920 Ga0501039_0016920_592_1503 298
75 3300049580 Ga0501046_0279099 Ga0501046_0279099_199_1110 298
76 3300049581 Ga0501047_0306626 Ga0501047_0306626_384_1295 298
77 3300049708 Ga0501245_007427 Ga0501245_007427_201_1097 298
78 3300049744 Ga0501083_0001071 Ga0501083_0001071_5632_6528 298
79 3300001979 JGI24740J21852_10000256 JGI24740J21852_100002567 299
80 3300002741 JGI25157J39369_1004510 JGI25157J39369_10045102 299
81 3300003320 rootH2_10143491 rootH2_101434914 299
82 3300005327 Ga0070658_10000018 Ga0070658_10000018144 299
83 3300005563 Ga0068855_100000054 Ga0068855_1000000542 299
84 3300005563 Ga0068855_100089442 Ga0068855_1000894422 299
85 3300005614 Ga0068856_100000271 Ga0068856_10000027115 299
86 3300005614 Ga0068856_100005050 Ga0068856_1000050502 299
87 3300013104 Ga0157370_10009590 Ga0157370_100095902 299
88 3300013307 Ga0157372_10011954 Ga0157372_100119542 299
89 3300014497 Ga0182008_10007237 Ga0182008_100072372 299
90 3300015261 Ga0182006_1000530 Ga0182006_10005306 299
91 3300025250 Ga0209026_1000421 Ga0209026_100042115 299
92 3300025909 Ga0207705_10000036 Ga0207705_1000003650 299
93 3300025949 Ga0207667_10000023 Ga0207667_10000023307 299
94 3300025949 Ga0207667_10071181 Ga0207667_100711813 299
95 3300026078 Ga0207702_10000284 Ga0207702_1000028417 299
96 3300026078 Ga0207702_10018905 Ga0207702_100189052 299
97 3300028794 Ga0307515_10000007 Ga0307515_10000007104 299
98 3300031548 Ga0307408_100001095 Ga0307408_1000010955 299
99 3300031649 Ga0307514_10244092 Ga0307514_102440921 299
100 3300031911 Ga0307412_10002225 Ga0307412_100022257 299
101 3300046453 Ga0495627_005617 Ga0495627_005617_2870_3778 299
102 3300046558 Ga0495633_0073825 Ga0495633_0073825_103_1131 299
103 3300046660 Ga0495625_0119955 Ga0495625_0119955_159_1094 299
104 3300047443 Ga0495687_001116 Ga0495687_001116_7928_8941 299
105 3300053122 Ga0500608_028644 Ga0500608_028644_798_1838 299

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01867

Cas_Cas1

CRISPR associated protein Cas1

6

256

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
5xvo-assembly1.cif.gz_A e. fae cas1-cas2/prespacer/target ternary complex revealing dna sampling and half-integration states 0.9188 1 299
5xvo-assembly1.cif.gz_A e. fae cas1-cas2/prespacer/target ternary complex revealing dna sampling and half-integration states 0.9158 1 299
5xvn-assembly1.cif.gz_D e. far cas1-cas2/prespacer binary complex 0.8744 1 299
5xvn-assembly1.cif.gz_D e. far cas1-cas2/prespacer binary complex 0.8712 1 299
2yzs-assembly1.cif.gz_A-2 crystal structure of uncharacterized conserved protein from aquifex aeolicus 0.7944 4 289
ID Description Score Start End Superfamily
af_P9WPJ5_2_80_3.100.10.20 Alpha Beta;Ribosomal Protein L15; Chain: K; domain 2;Ribosomal Protein L15; Chain: K; domain 2;CRISPR-associated endonuclease Cas1, N-terminal domain 0.8801 4 83 3.100.10.20
af_P9WPJ5_2_80_3.100.10.20 Alpha Beta;Ribosomal Protein L15; Chain: K; domain 2;Ribosomal Protein L15; Chain: K; domain 2;CRISPR-associated endonuclease Cas1, N-terminal domain 0.87 4 83 3.100.10.20
3lfxA01 Alpha Beta;Ribosomal Protein L15; Chain: K; domain 2;Ribosomal Protein L15; Chain: K; domain 2;CRISPR-associated endonuclease Cas1, N-terminal domain 0.8477 4 83 3.100.10.20
af_P9WPJ5_86_325_1.20.120.920 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);CRISPR-associated endonuclease Cas1, C-terminal domain 0.8291 92 290 1.20.120.920
af_Q4E030_180_321_3.30.30.170 Alpha Beta;2-Layer Sandwich;Defensin A-like; 0.8255 12 34 3.30.30.170
ID Description Score Start End GO Terms
AF-A0A4V1T5B0-F1-model_v4 deleted 0.9945 1 71
AF-A0A291QSW6-F1-model_v4 CRISPR-associated endonuclease Cas1 (EC 3.1.-.-) 0.9809 1 298 GO:0003677
GO:0004520
GO:0043571
GO:0046872
GO:0051607
AF-A0A2W7QU17-F1-model_v4 CRISPR-associated endonuclease Cas1 (EC 3.1.-.-) 0.9808 1 298 GO:0003677
GO:0004520
GO:0043571
GO:0046872
GO:0051607
AF-A0A1C4G8U5-F1-model_v4 CRISP-associated protein Cas1 0.9806 103 298 GO:0003677
GO:0004520
GO:0043571
GO:0046872
GO:0051607
AF-A0A291QSW6-F1-model_v4 CRISPR-associated endonuclease Cas1 (EC 3.1.-.-) 0.9777 1 298 GO:0003677
GO:0004520
GO:0043571
GO:0046872
GO:0051607

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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