F027260

General Info

Members Datasets Scaffolds Average Seq Length
104 104 208 412

Family's Representative Sequence

Representative Sequence 3300031456|Ga0307513_10099082|Ga0307513_100990823
Length 394
Sequence MAQPGAEPSAELRRTLGVGDAVVIGLGSMFAALGPAAHAAGSGLLLGLAAAAVVAYCNAMSSARLAALYPASGGTYVYGRERLGDFWGYLAGWSFVVGKTASCAAMALTVGAYVWPGQAHAVAVAAVVALTAVNYCGVQKAAWLTRTIVAVVLAVLASVVVVCLGSDAADAGRLDVGASGGVGGVLEAAGLLFFAFAGYARIATLSEEVRDPARTISVLGSGGLGQATAPLADAVRAAGVPGLVPVVRVGAAVAALGSLLALILGVSRTTLAMARDRHLPGALAAVHPRFQVPHRAELAVGAVVAVLAATVDVRGAVGFSSFGVLAYYAVANASAWTLSSAPTSRVVPAVGLLGCVTLAFALPGVSVVVGTGVLGLGAAVYGVRRWWPASGSSA

Samples

Sample ID Description Type Environment
1 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
4 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
5 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
6 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
7 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
8 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
9 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
10 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
11 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
12 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
13 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
14 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
15 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
16 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
17 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
18 2619618881 Frankia sp. ACN1ag Isolate Unclassified
19 2619619003 Frankia sp. CpI1-P Isolate Nodule
20 2643221578 Streptomyces sp. Root63 Isolate Unclassified
21 2643221647 Streptomyces sp. Root369 Isolate Unclassified
22 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
23 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
24 2643221714 Streptomyces sp. Root264 Isolate Unclassified
25 2671180195 Frankia sp. CcI49 Isolate Nodule
26 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
27 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
28 2744054611 Aldersonia kunmingensis DSM 45001 Isolate Rhizosphere
29 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
30 2773857922 Frankia sp. CcI49 Isolate Nodule
31 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
32 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
33 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
34 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
35 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
36 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
37 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
38 2808606448 Streptomyces sp. 193411 Isolate Unclassified
39 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
40 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
41 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
42 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
43 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
44 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
45 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
46 2842134933 Mycolicibacterium obuense SEMIA 442 Isolate Nodule
47 2842888712 Tsukamurella sp. R-71941 Isolate Unclassified
48 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
49 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
50 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
51 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
52 2862574272 Streptomyces sp. AcE210 Isolate Nodule
53 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
54 2867428634 Streptomyces sp. RP5T Isolate Unclassified
55 2867475112 Streptomyces sp. TM32 Isolate Unclassified
56 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
57 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
58 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
59 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
60 2902792274 Mycolicibacterium sp. P9-64 Isolate Unclassified
61 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
62 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
63 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
64 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
65 2939582691 Mycolicibacterium sp. 624 Isolate Rhizosphere
66 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
67 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
68 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
69 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
70 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
71 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
72 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
73 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
74 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
75 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
76 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
77 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
78 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
79 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
80 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
81 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
82 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
83 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
84 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
85 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
86 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
87 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
88 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
89 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
90 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
91 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
92 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
93 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
94 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
95 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
96 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
97 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
98 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
99 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
100 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
101 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
102 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified
103 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
104 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 7.69
Metatranscriptomes 0.96
Isolates 91.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 6.73
Rhizoplane 0.96
Rhizosphere 50.96
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307513_10099082 3300031456 Bacteria 2943
2 Ga0006562J51391_1088522 3300003578 Bacteria 1640
3 Ga0070665_100212385 3300005548 Bacteria 1936
4 Ga0307508_10026665 3300031616 Bacteria 5237
5 Ga0307514_10004127 3300031649 Bacteria 13454
6 Ga0307516_10003147 3300031730 Bacteria 21473
7 Ga0307510_10005845 3300033180 Bacteria 14672
8 Ga0495685_016632 3300047447 Bacteria 2514
9 Ga0501035_0030805 3300049822 Bacteria 4889
10 2523385355 2523231044 Bacteria 6434991
11 2547410162 2547132111 Bacteria 8013147
12 2552108238 2551306166 Bacteria 9731570
13 2554256850 2554235005 Bacteria 6457341
14 2585297756 2582581312 Bacteria 7308206
15 2585308135 2582581313 Bacteria 10042643
16 2616696842 2616644814 Bacteria 11555299
17 2616904244 2616644941 Bacteria 8510691
18 2619856133 2619618881 Bacteria 7521104
19 2620350382 2619619003 Bacteria 7619552
20 2643903529 2643221578 Bacteria 9213798
21 2644261639 2643221647 Bacteria 10741251
22 2644409691 2643221673 Bacteria 9196637
23 2644439279 2643221678 Bacteria 9540101
24 2644631005 2643221714 Bacteria 9015452
25 2671835999 2671180195 Bacteria 9757215
26 2676497076 2675903060 Bacteria 10051191
27 2686535567 2684623035 Bacteria 8032739
28 2744957069 2744054611 Bacteria 5611514
29 2768644840 2767802112 Bacteria 6465194
30 2774854155 2773857922 Bacteria 9757215
31 2785341923 2784746763 Bacteria 9783172
32 2785370731 2784746768 Bacteria 10036182
33 2786671915 2786546132 Bacteria 10419719
34 2793985060 2791355406 Bacteria 11364898
35 2808843278 2808606359 Bacteria 9866990
36 2808874587 2808606365 Bacteria 4301966
37 2808912862 2808606375 Bacteria 9466072
38 2809233348 2808606448 Bacteria 8656184
39 2811845138 2808606982 Bacteria 7791042
40 2812356762 2811994879 Bacteria 9313447
41 2812479481 2811994917 Bacteria 7761064
42 2816424201 2816332119 Bacteria 8120218
43 2816509705 2816332139 Bacteria 9138787
44 2819699686 2818991463 Bacteria 7948711
45 2819747056 2818991472 Bacteria 10089953
46 2842135197 2842134933 Bacteria 5847019
47 2842892478 2842888712 Bacteria 4279094
48 2862181966 2862178590 Bacteria 8583590
49 2862286808 2862281513 Bacteria 9621493
50 2862387364 2862382967 Bacteria 10317375
51 2862516831 2862507626 Bacteria 9425308
52 2862581188 2862574272 Bacteria 10567477
53 2863411610 2863404153 Bacteria 9672205
54 2867432963 2867428634 Bacteria 9590268
55 2867478161 2867475112 Bacteria 6909112
56 2875395652 2875391855 Bacteria 7600475
57 2877679856 2877676314 Bacteria 9512378
58 2891559995 2891554331 Bacteria 8812224
59 2895882423 2895880812 Bacteria 11255272
60 2902794397 2902792274 Bacteria 7270173
61 2912723374 2912715099 Bacteria 9460473
62 2912757961 2912757875 Bacteria 7940295
63 2919470178 2919468124 Bacteria 9133025
64 2929213134 2929212328 Bacteria 7708288
65 2939587137 2939582691 Bacteria 7088898
66 2946052903 2946045630 Bacteria 8527308
67 2946069111 2946064051 Bacteria 8957905
68 2946079955 2946072368 Bacteria 8999607
69 2947227828 2947224130 Bacteria 9938529
70 2954003074 2954002825 Bacteria 9173742
71 2954384809 2954380949 Bacteria 10050426
72 2954678188 2954673503 Bacteria 9685905
73 2954685969 2954682443 Bacteria 9862841
74 2954695620 2954691527 Bacteria 10720516
75 2954710813 2954701450 Bacteria 10834262
76 2954715047 2954711539 Bacteria 10867210
77 2954724989 2954721474 Bacteria 10456478
78 2954736829 2954731030 Bacteria 10243860
79 2954743922 2954740390 Bacteria 10229294
80 2954755677 2954749733 Bacteria 10366972
81 2954762863 2954759201 Bacteria 9358192
82 2990047949 2990044586 Bacteria 6603797
83 2990062258 2990059506 Bacteria 9321252
84 2997456168 2997451912 Bacteria 8492419
85 2997607318 2997600082 Bacteria 9896405
86 3006397980 3006393351 Bacteria 6615579
87 3006489668 3006486233 Bacteria 8157040
88 3006494682 3006493962 Bacteria 8825450
89 8008490487 8008485437 Bacteria 7198341
90 8008566489 8008558824 Bacteria 10610750
91 8008577850 8008574985 Bacteria 7815457
92 8023629373 8023623736 Bacteria 8593882
93 8025484597 8025478263 Bacteria 8209203
94 8025529789 8025524527 Bacteria 7197316
95 8047901295 8047893842 Bacteria 11723082
96 8048132705 8048127548 Bacteria 11053136
97 8048357604 8048356638 Bacteria 11044339
98 8048378236 8048369669 Bacteria 11666822
99 8048387334 8048379754 Bacteria 11877923
100 8048413449 8048406513 Bacteria 8936924
101 8053953527 8053945823 Bacteria 8962862
102 8055181112 8055172936 Bacteria 9305943
103 8056668913 8056667051 Bacteria 6953971
104 8056837692 8056829672 Bacteria 9045328
105 Ga0307513_10099082
106 Ga0006562J51391_1088522
107 Ga0070665_100212385
108 Ga0307508_10026665
109 Ga0307514_10004127
110 Ga0307516_10003147
111 Ga0307510_10005845
112 Ga0495685_016632
113 Ga0501035_0030805
114 2523385355
115 2547410162
116 2552108238
117 2554256850
118 2585297756
119 2585308135
120 2616696842
121 2616904244
122 2619856133
123 2620350382
124 2643903529
125 2644261639
126 2644409691
127 2644439279
128 2644631005
129 2671835999
130 2676497076
131 2686535567
132 2744957069
133 2768644840
134 2774854155
135 2785341923
136 2785370731
137 2786671915
138 2793985060
139 2808843278
140 2808874587
141 2808912862
142 2809233348
143 2811845138
144 2812356762
145 2812479481
146 2816424201
147 2816509705
148 2819699686
149 2819747056
150 2842135197
151 2842892478
152 2862181966
153 2862286808
154 2862387364
155 2862516831
156 2862581188
157 2863411610
158 2867432963
159 2867478161
160 2875395652
161 2877679856
162 2891559995
163 2895882423
164 2902794397
165 2912723374
166 2912757961
167 2919470178
168 2929213134
169 2939587137
170 2946052903
171 2946069111
172 2946079955
173 2947227828
174 2954003074
175 2954384809
176 2954678188
177 2954685969
178 2954695620
179 2954710813
180 2954715047
181 2954724989
182 2954736829
183 2954743922
184 2954755677
185 2954762863
186 2990047949
187 2990062258
188 2997456168
189 2997607318
190 3006397980
191 3006489668
192 3006494682
193 8008490487
194 8008566489
195 8008577850
196 8023629373
197 8025484597
198 8025529789
199 8047901295
200 8048132705
201 8048357604
202 8048378236
203 8048387334
204 8048413449
205 8053953527
206 8055181112
207 8056668913
208 8056837692

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00324

AA_permease

Amino acid permease

221

377

0.86

PF13520

AA_permease_2

Amino acid permease

216

381

0.78

PF13520

AA_permease_2

Amino acid permease

14

224

0.76

PF00324

AA_permease

Amino acid permease

20

218

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
6f34-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue bound to arginine. 0.8391 11 383
5oqt-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue 0.8284 13 383
6f2g-assembly1.cif.gz_A bacterial asc transporter crystal structure in open to in conformation 0.8223 19 387
3gi9-assembly1.cif.gz_C crystal structure of apct transporter bound to 7f11 monoclonal fab fragment 0.8184 14 387
3gi8-assembly1.cif.gz_C crystal structure of apct k158a transporter bound to 7f11 monoclonal fab fragment 0.8147 14 386
ID Description Score Start End Superfamily
af_P9WQM3_13_431_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9064 13 389 1.20.1740.10
af_P71892_30_474_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8574 13 381 1.20.1740.10
af_P9WQM3_13_431_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8544 13 389 1.20.1740.10
af_P25737_13_472_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8516 13 385 1.20.1740.10
af_B5DFJ0_32_432_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.851 13 341 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A6B2SJQ8-F1-model_v4 APC family permease 0.9477 37 268 GO:0016020
GO:0055085
AF-A0A6B2SJQ8-F1-model_v4 APC family permease 0.9438 37 268 GO:0016020
GO:0055085
AF-A0A2E4FYE1-F1-model_v4 Amino acid permease 0.9099 13 379 GO:0016020
GO:0055085
AF-A0A7J2ZFK0-F1-model_v4 Amino acid permease 0.8951 13 391 GO:0016020
GO:0022857
AF-A0A4R5DHN1-F1-model_v4 APC family permease 0.8908 1 391 GO:0005886
GO:0022857

Map