F023333

General Info

Members Datasets Scaffolds Average Seq Length
103 42 74 401

Family's Representative Sequence

Representative Sequence 3300053093|Ga0500651_0000379|Ga0500651_0000379_1251_2705
Length 484
Sequence MDQKALSDLLERYNKGEASKAEIELLESWYLEQAAKPSNLSVEDVVAAEDLMAAYLKIHIGRKKATEADKEVAAIPKKIRLWQHIAAIRTIAAAAVLLVAGFGAHFYTLYYAARHLEGSEATRELLNYANDIAPGKNTATITLANGSTIVLSDAKTGVVVGVESLRYNDNSLVQGASGTHFSGSLKGDQKNTGPVSAPSPGVKEMLTATTPRGGTYQITLPDGTKVWLNAASSLKFPASFAKLKDRRVELVGEGYFEVAKDKAHPFIVKTDKQEVEVLGTHFNINSYADEASTKTTLLEGSVRVVYAPRHPEYDRLNPARHPEGSAATRTGPFASSAQLKLLNSTDKRSLPYGRDDGKDRDDERGQYDGSRQDNGQIGKAIILKPNQQSVLTGNNQLKVESANVNKAIAWKNGKFVFEYESIESVMRKLARWYDAEIIYQGNFEGKTFTGSISRFDSISKILEKITYTQDVHFKIEGRRITVMP

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
3 2738541283 Pedobacter sp. OK701 Isolate Unclassified
4 2738541284 Pedobacter sp. YR016 Isolate Unclassified
5 2738543023 Pedobacter sp. OK628 Isolate Unclassified
6 2739367663 Pedobacter sp. YR510 Isolate Unclassified
7 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
8 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
9 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
10 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
11 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
12 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
13 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
14 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
15 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
16 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
17 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
18 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
19 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
20 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
21 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
22 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
26 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
27 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
28 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
29 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
30 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
31 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
32 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
33 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
34 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
35 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
36 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
37 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
38 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
39 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
40 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
41 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
42 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 72.82
Metatranscriptomes 0
Isolates 27.18

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.45
Nodule 0
Rhizoplane 0.97
Rhizosphere 56.31
Stem 0
Stem Tuber 0
Unclassified 24.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2732696 2162886007 Bacteria 84561
2 rootL2_10052089 3300003322 Bacteria 8324
3 Ga0065714_10064909 3300005288 Bacteria 15698
4 Ga0065714_10077581 3300005288 Bacteria 2676
5 Ga0065714_10082316 3300005288 Unclassified 2316
6 Ga0065704_10000205 3300005289 Bacteria 128899
7 Ga0105240_10017964 3300009093 Bacteria 9514
8 Ga0105237_10000327 3300009545 Bacteria 66993
9 Ga0105237_10001769 3300009545 Bacteria 27917
10 Ga0105237_10002865 3300009545 Bacteria 20968
11 Ga0105237_10009131 3300009545 Bacteria 10653
12 Ga0105249_10325076 3300009553 Bacteria 1550
13 Ga0157370_10002514 3300013104 Bacteria 22062
14 Ga0157370_10003272 3300013104 Bacteria 19093
15 Ga0157370_10007623 3300013104 Bacteria 11752
16 Ga0157370_10010700 3300013104 Bacteria 9652
17 Ga0157370_10011614 3300013104 Bacteria 9194
18 Ga0157370_10052914 3300013104 Bacteria 3874
19 Ga0157370_10207417 3300013104 Bacteria 1817
20 Ga0182008_10000286 3300014497 Bacteria 39644
21 Ga0182008_10000485 3300014497 Bacteria 30173
22 Ga0182008_10015736 3300014497 Bacteria 3942
23 Ga0182006_1000457 3300015261 Bacteria 32184
24 Ga0182006_1000930 3300015261 Bacteria 19521
25 Ga0182006_1000958 3300015261 Bacteria 19176
26 Ga0182006_1007390 3300015261 Bacteria 5030
27 Ga0182006_1018825 3300015261 Bacteria 2914
28 Ga0182006_1035109 3300015261 Bacteria 2001
29 Ga0163161_10000937 3300017792 Bacteria 22439
30 Ga0163161_10000982 3300017792 Bacteria 21843
31 Ga0163161_10005249 3300017792 Bacteria 9016
32 Ga0207695_10009136 3300025913 Bacteria 12303
33 Ga0207671_10001932 3300025914 Bacteria 22972
34 Ga0207671_10008775 3300025914 Bacteria 8515
35 Ga0207671_10173850 3300025914 Unclassified 1673
36 Ga0207712_10266991 3300025961 Bacteria 1390
37 Ga0307517_10000977 3300028786 Bacteria 48466
38 Ga0307509_10066571 3300031507 Bacteria 3779
39 Ga0307516_10002714 3300031730 Bacteria 23321
40 Ga0307414_10030839 3300032004 Unclassified 3508
41 Ga0439439_0006455 3300041406 Bacteria 2713
42 Ga0466972_0026445 3300044658 Bacteria 2877
43 Ga0495627_018149 3300046453 Bacteria 2380
44 Ga0495610_0000025 3300046512 Bacteria 301208
45 Ga0495648_0012213 3300046524 Bacteria 6420
46 Ga0495633_0000923 3300046558 Bacteria 24876
47 Ga0496115_0153390 3300048918 Bacteria 1902
48 Ga0496122_0001373 3300048925 Bacteria 39623
49 Ga0496122_0002587 3300048925 Bacteria 25370
50 Ga0496122_0008147 3300048925 Bacteria 11411
51 Ga0496123_0001485 3300048926 Bacteria 32574
52 Ga0496123_0001966 3300048926 Bacteria 26685
53 Ga0496123_0005915 3300048926 Bacteria 12068
54 Ga0496123_0009296 3300048926 Bacteria 8871
55 Ga0496125_0024946 3300048928 Bacteria 5487
56 Ga0496125_0107327 3300048928 Bacteria 2035
57 Ga0500583_0012684 3300053092 Bacteria 3226
58 Ga0500583_0106730 3300053092 Bacteria 1376
59 Ga0500651_0000126 3300053093 Bacteria 47037
60 Ga0500651_0000181 3300053093 Bacteria 40952
61 Ga0500651_0000182 3300053093 Bacteria 40910
62 Ga0500651_0000379 3300053093 Bacteria 24408
63 Ga0500651_0000475 3300053093 Bacteria 21066
64 Ga0500651_0000487 3300053093 Bacteria 20663
65 Ga0500651_0000665 3300053093 Bacteria 17115
66 Ga0500651_0000985 3300053093 Bacteria 14027
67 Ga0500651_0001944 3300053093 Bacteria 10682
68 Ga0500651_0005087 3300053093 Bacteria 7472
69 Ga0500651_0012117 3300053093 Bacteria 5217
70 Ga0500651_0012810 3300053093 Bacteria 5090
71 Ga0500651_0080939 3300053093 Bacteria 2011
72 Ga0500603_018358 3300053150 Unclassified 1684
73 Ga0500622_0010561 3300053156 Bacteria 5063
74 Ga0500622_0109738 3300053156 Bacteria 1349

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300028786 Ga0307517_10000977 Ga0307517_100009772 325
2 3300013104 Ga0157370_10011614 Ga0157370_100116149 337
3 3300053093 Ga0500651_0012810 Ga0500651_0012810_1336_2643 338
4 3300053093 Ga0500651_0000475 Ga0500651_0000475_3353_4675 347
5 3300053093 Ga0500651_0001944 Ga0500651_0001944_8418_9914 347
6 3300053093 Ga0500651_0005087 Ga0500651_0005087_2138_3709 357
7 iso_pu_bacteria 2852627209 2852629701 360
8 3300014497 Ga0182008_10015736 Ga0182008_100157363 361
9 3300053093 Ga0500651_0000487 Ga0500651_0000487_18712_20442 361
10 3300053093 Ga0500651_0080939 Ga0500651_0080939_35_1420 362
11 3300053156 Ga0500622_0109738 Ga0500622_0109738_71_1273 362
12 3300053093 Ga0500651_0000475 Ga0500651_0000475_13806_15185 363
13 iso_pu_bacteria 2739367663 2739644479 363
14 3300053093 Ga0500651_0000181 Ga0500651_0000181_662_1951 364
15 3300053093 Ga0500651_0012117 Ga0500651_0012117_3731_4996 364
16 3300031507 Ga0307509_10066571 Ga0307509_100665712 366
17 3300053093 Ga0500651_0000985 Ga0500651_0000985_11866_13587 366
18 iso_pu_bacteria 2738541283 2738757853 366
19 3300053092 Ga0500583_0106730 Ga0500583_0106730_74_1258 367
20 iso_pu_bacteria 2738543023 2739301745 367
21 3300013104 Ga0157370_10003272 Ga0157370_1000327212 368
22 3300048925 Ga0496122_0001373 Ga0496122_0001373_26419_27615 368
23 3300048926 Ga0496123_0009296 Ga0496123_0009296_7083_8279 368
24 3300053093 Ga0500651_0000379 Ga0500651_0000379_1251_2705 368
25 iso_pu_bacteria 2738541283 2738757100 368
26 iso_pu_bacteria 2738541284 2738763930 368
27 iso_pu_bacteria 2852627209 2852628580 368
28 iso_pu_bacteria 2738541283 2738759232 369
29 3300009545 Ga0105237_10001769 Ga0105237_1000176918 370
30 3300015261 Ga0182006_1000958 Ga0182006_10009584 370
31 3300015261 Ga0182006_1035109 Ga0182006_10351091 370
32 3300017792 Ga0163161_10005249 Ga0163161_100052496 370
33 3300025914 Ga0207671_10173850 Ga0207671_101738501 370
34 3300046453 Ga0495627_018149 Ga0495627_018149_567_1745 370
35 3300046512 Ga0495610_0000025 Ga0495610_0000025_202994_204172 370
36 3300046558 Ga0495633_0000923 Ga0495633_0000923_8512_9690 370
37 3300048918 Ga0496115_0153390 Ga0496115_0153390_569_1738 370
38 3300053093 Ga0500651_0000126 Ga0500651_0000126_44949_46148 370
39 iso_pu_bacteria 2738541283 2738756195 370
40 iso_pu_bacteria 2852627209 2852632200 370
41 iso_pu_bacteria 2919186247 2919189667 370
42 iso_pu_bacteria 2939664404 2939667893 370
43 iso_pu_bacteria 2902048731 2902049156 371
44 iso_pu_bacteria 2919186247 2919186294 371
45 iso_pu_bacteria 2939664404 2939666436 371
46 3300009545 Ga0105237_10002865 Ga0105237_100028652 372
47 3300013104 Ga0157370_10002514 Ga0157370_100025147 372
48 3300014497 Ga0182008_10000485 Ga0182008_1000048522 372
49 3300015261 Ga0182006_1018825 Ga0182006_10188253 372
50 3300017792 Ga0163161_10000937 Ga0163161_1000093719 372
51 3300017792 Ga0163161_10000982 Ga0163161_100009827 372
52 3300025914 Ga0207671_10008775 Ga0207671_100087755 372
53 3300046524 Ga0495648_0012213 Ga0495648_0012213_100_1329 372
54 3300048925 Ga0496122_0008147 Ga0496122_0008147_93_1265 372
55 3300048926 Ga0496123_0001485 Ga0496123_0001485_29879_31051 372
56 3300048928 Ga0496125_0107327 Ga0496125_0107327_621_1793 372
57 3300053092 Ga0500583_0012684 Ga0500583_0012684_476_1705 372
58 3300053156 Ga0500622_0010561 Ga0500622_0010561_3439_4668 372
59 iso_pu_bacteria 2775506987 2776613520 372
60 3300009093 Ga0105240_10017964 Ga0105240_100179646 373
61 3300009545 Ga0105237_10000327 Ga0105237_1000032718 373
62 3300009553 Ga0105249_10325076 Ga0105249_103250761 373
63 3300013104 Ga0157370_10010700 Ga0157370_100107004 373
64 3300015261 Ga0182006_1000930 Ga0182006_100093014 373
65 3300025913 Ga0207695_10009136 Ga0207695_100091365 373
66 3300025914 Ga0207671_10001932 Ga0207671_100019323 373
67 3300025961 Ga0207712_10266991 Ga0207712_102669911 373
68 3300041406 Ga0439439_0006455 Ga0439439_0006455_270_1457 373
69 3300048925 Ga0496122_0002587 Ga0496122_0002587_13700_14884 373
70 3300048926 Ga0496123_0001966 Ga0496123_0001966_20666_21850 373
71 iso_pu_bacteria 2738543023 2739300125 373
72 3300005288 Ga0065714_10082316 Ga0065714_100823162 374
73 3300013104 Ga0157370_10052914 Ga0157370_100529141 374
74 3300013104 Ga0157370_10207417 Ga0157370_102074172 374
75 3300053093 Ga0500651_0000665 Ga0500651_0000665_14495_15970 374
76 iso_pu_bacteria 2738541284 2738760134 374
77 iso_pu_bacteria 2919186247 2919186989 374
78 iso_pu_bacteria 2919186247 2919190072 374
79 iso_pu_bacteria 2939664404 2939665742 374
80 iso_pu_bacteria 2939664404 2939668353 374
81 3300009545 Ga0105237_10009131 Ga0105237_100091315 375
82 3300013104 Ga0157370_10007623 Ga0157370_100076232 375
83 3300014497 Ga0182008_10000286 Ga0182008_1000028619 375
84 3300015261 Ga0182006_1000457 Ga0182006_100045713 375
85 3300048926 Ga0496123_0005915 Ga0496123_0005915_5780_7018 375
86 3300048928 Ga0496125_0024946 Ga0496125_0024946_4065_5303 375
87 3300053093 Ga0500651_0000182 Ga0500651_0000182_16790_17965 375
88 iso_pu_bacteria 2738541283 2738757117 375
89 iso_pu_bacteria 2919186247 2919187955 375
90 iso_pu_bacteria 2939664404 2939664778 375
91 3300032004 Ga0307414_10030839 Ga0307414_100308391 377
92 3300044658 Ga0466972_0026445 Ga0466972_0026445_644_1897 377
93 3300053150 Ga0500603_018358 Ga0500603_018358_124_1314 377
94 iso_pu_bacteria 2585427687 2586208277 378
95 iso_pu_bacteria 2738543023 2739304164 378
96 3300003322 rootL2_10052089 rootL2_100520893 379
97 3300005288 Ga0065714_10064909 Ga0065714_100649099 380
98 3300005288 Ga0065714_10077581 Ga0065714_100775812 380
99 3300031730 Ga0307516_10002714 Ga0307516_1000271414 380
100 iso_pu_bacteria 2585427687 2586208831 380
101 2162886007 SwRhRL2b_contig_2732696 SwRhRL2b_0490.00004380 401
102 3300005289 Ga0065704_10000205 Ga0065704_1000020593 401
103 3300015261 Ga0182006_1007390 Ga0182006_10073903 401

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF16344

FecR_C

FecR, C-terminal

414

482

0.98

PF04773

FecR

FecR protein

207

303

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
4m0n-assembly1.cif.gz_A crystal structure of a putative anti-sigma factor (bdi_1681) from parabacteroides distasonis atcc 8503 at 1.65 a resolution 0.8789 185 397
4m0h-assembly2.cif.gz_B crystal structure of a putative anti-sigma factor (bdi_1681) from parabacteroides distasonis atcc 8503 at 2.50 a resolution 0.8725 182 398
4m0h-assembly2.cif.gz_B crystal structure of a putative anti-sigma factor (bdi_1681) from parabacteroides distasonis atcc 8503 at 2.50 a resolution 0.8573 182 398
6ovm-assembly1.cif.gz_R crystal structure of the pseudomonas capeferrum anti-sigma regulator pupr c-terminal cell-surface signaling domain in complex with the outer membrane transporter pupb n-terminal signaling domain (semet) 0.8544 185 401
4m0n-assembly1.cif.gz_A crystal structure of a putative anti-sigma factor (bdi_1681) from parabacteroides distasonis atcc 8503 at 1.65 a resolution 0.8518 185 397
ID Description Score Start End Superfamily
4m0hB01 Mainly Beta;Sandwich;Jelly Rolls; 0.931 182 317 2.60.120.1440
4m0hB01 Mainly Beta;Sandwich;Jelly Rolls; 0.8829 182 317 2.60.120.1440
af_P95200_9_428_3.50.50.100 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.8529 148 171 3.50.50.100
af_P23485_97_238_2.60.120.1440 Mainly Beta;Sandwich;Jelly Rolls; 0.8374 187 317 2.60.120.1440
af_Q8IEJ7_196_382_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8334 384 401 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A351YGK7-F1-model_v4 FecR family protein 0.9037 130 401 GO:0016989
AF-A0A519UWG2-F1-model_v4 DUF4974 domain-containing protein 0.901 183 401 GO:0016989
AF-Q07NA0-F1-model_v4 Putative FecR 0.8955 187 399 GO:0016989
AF-A0A522WPJ8-F1-model_v4 DUF4974 domain-containing protein 0.8946 187 399 GO:0016989
AF-A0A1S6EUG1-F1-model_v4 Iron dicitrate transport regulator FecR 0.8887 187 399 GO:0016989

Feature Viewer

pLDDT pTM Quality
77.27 0.66 Medium
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Predicted Structure (AlphaFold2)

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