F004589

General Info

Members Datasets Scaffolds Average Seq Length
100 29 99 414

Family's Representative Sequence

Representative Sequence 3300044673|Ga0453683_0055766|Ga0453683_0055766_173_1540
Length 455
Sequence MDPTGLTRLLGFFAAKTPKKIGVTVDFKEFNLHPQIQAGVEALGYVTPTPIQLQAIPPVMDGQDVMGLAQTGTGKTAAFGLPMLHRLMQGERGRVRALVVAPTRELAEQINDALNAMGKVTRLKSVTVYGGVNINTQIKRLKEGVEIVVACPGRLLDHISQGTVDLSKVEMLVLDEADQMFDMGFLPDVKRILKVLPSVRQTLMFSATMPDDIRKLAHDILKKPVTVQVSRTAPAATVSHALYPVAQHLKTPLLFELLKHTDTESVLIFTRTKHRAKRVGEQLEKSGYKAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMITNEDDLMVRGIERVLGGKIERRTLEGFDYNVPAPKKDVEFVRPPREPQRRKESPAKSGKPAAGRHAVGAGTKSAAPRPASHAARRSGR

Samples

Sample ID Description Type Environment
1 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
4 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
5 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
6 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
7 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
8 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
9 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
10 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
11 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
12 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
13 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
14 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
15 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
16 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
17 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
18 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
19 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
20 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
21 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
22 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
23 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
24 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
25 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
26 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
27 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
28 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
29 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98
Metatranscriptomes 1
Isolates 1

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 95
Stem 0
Stem Tuber 0
Unclassified 5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10003902 3300005327 Bacteria 12225
2 Ga0070716_100032188 3300006173 Bacteria 2858
3 Ga0105239_10012488 3300010375 Bacteria 9460
4 Ga0105239_10035936 3300010375 Bacteria 5439
5 Ga0105239_10280921 3300010375 Bacteria 1874
6 Ga0207705_10010782 3300025909 Bacteria 6634
7 Ga0265334_10002504 3300028573 Bacteria 8586
8 Ga0265334_10004739 3300028573 Bacteria 5985
9 Ga0265338_10017046 3300028800 Bacteria 7855
10 Ga0265340_10015465 3300031247 Bacteria 3964
11 Ga0265331_10038461 3300031250 Bacteria 2338
12 Ga0265327_10044771 3300031251 Bacteria 2357
13 Ga0316576_10006257 3300031727 Bacteria 7390
14 Ga0316576_10016876 3300031727 Bacteria 4948
15 Ga0316576_10024764 3300031727 Bacteria 4194
16 Ga0316576_10027571 3300031727 Bacteria 3995
17 Ga0316576_10061977 3300031727 Bacteria 2742
18 Ga0316576_10191399 3300031727 Bacteria 1542
19 Ga0316578_10017160 3300031728 Bacteria 3936
20 Ga0316578_10028914 3300031728 Bacteria 3142
21 Ga0307409_100048058 3300031995 Bacteria 3244
22 Ga0316592_1020414 3300033524 Bacteria 1407
23 Ga0373928_0000116 3300035084 Bacteria 14635
24 Ga0316574_0075705 3300035398 Bacteria 2132
25 Ga0316574_0113317 3300035398 Bacteria 1739
26 Ga0316582_0021270 3300036647 Bacteria 3829
27 Ga0316584_0002947 3300036712 Bacteria 10941
28 Ga0316584_0009082 3300036712 Bacteria 6883
29 Ga0316584_0073004 3300036712 Bacteria 2571
30 Ga0395900_0014774 3300037418 Bacteria 7958
31 Ga0395898_0005382 3300037466 Bacteria 13834
32 Ga0400490_30487 3300038726 Bacteria 2913
33 Ga0400486_05505 3300038742 Bacteria 3443
34 Ga0451577_0000127 3300042876 Bacteria 168002
35 Ga0451577_0000132 3300042876 Bacteria 167282
36 Ga0451577_0000314 3300042876 Bacteria 92338
37 Ga0451577_0000632 3300042876 Bacteria 56385
38 Ga0451577_0005749 3300042876 Bacteria 12576
39 Ga0451577_0008151 3300042876 Bacteria 10218
40 Ga0451577_0010133 3300042876 Bacteria 9028
41 Ga0451577_0011775 3300042876 Bacteria 8255
42 Ga0451577_0029211 3300042876 Bacteria 4982
43 Ga0451577_0036058 3300042876 Bacteria 4454
44 Ga0451577_0181942 3300042876 Bacteria 1895
45 Ga0451577_0195320 3300042876 Bacteria 1826
46 Ga0453683_0000002 3300044673 Bacteria 1244396
47 Ga0453683_0000060 3300044673 Bacteria 185920
48 Ga0453683_0000102 3300044673 Bacteria 127214
49 Ga0453683_0000121 3300044673 Bacteria 116746
50 Ga0453683_0000533 3300044673 Bacteria 42419
51 Ga0453683_0001283 3300044673 Bacteria 22256
52 Ga0453683_0011168 3300044673 Bacteria 5937
53 Ga0453683_0015312 3300044673 Bacteria 4967
54 Ga0453683_0019028 3300044673 Bacteria 4403
55 Ga0453683_0021598 3300044673 Bacteria 4109
56 Ga0453683_0055766 3300044673 Bacteria 2473
57 Ga0453683_0078743 3300044673 Bacteria 2064
58 Ga0453684_0000052 3300044712 Bacteria 546732
59 Ga0453684_0000314 3300044712 Bacteria 205428
60 Ga0453684_0000319 3300044712 Bacteria 203440
61 Ga0453684_0000453 3300044712 Bacteria 165759
62 Ga0453684_0001369 3300044712 Bacteria 70779
63 Ga0453684_0002779 3300044712 Bacteria 41401
64 Ga0453684_0003070 3300044712 Bacteria 38652
65 Ga0453684_0003129 3300044712 Bacteria 38101
66 Ga0453684_0003317 3300044712 Bacteria 36640
67 Ga0453684_0003633 3300044712 Bacteria 34344
68 Ga0453684_0006792 3300044712 Bacteria 21524
69 Ga0453684_0007092 3300044712 Bacteria 20904
70 Ga0453684_0012299 3300044712 Bacteria 14162
71 Ga0453684_0018747 3300044712 Bacteria 10595
72 Ga0453684_0033129 3300044712 Bacteria 7209
73 Ga0453684_0046529 3300044712 Bacteria 5769
74 Ga0453684_0050734 3300044712 Bacteria 5453
75 Ga0453684_0065791 3300044712 Bacteria 4621
76 Ga0453684_0083192 3300044712 Bacteria 3984
77 Ga0453684_0093280 3300044712 Bacteria 3709
78 Ga0453684_0122958 3300044712 Bacteria 3129
79 Ga0453684_0125103 3300044712 Bacteria 3096
80 Ga0453684_0141364 3300044712 Bacteria 2874
81 Ga0453684_0178908 3300044712 Bacteria 2491
82 Ga0453684_0283502 3300044712 Bacteria 1888
83 Ga0453684_0326580 3300044712 Bacteria 1736
84 Ga0453684_0370906 3300044712 Bacteria 1609
85 Ga0453684_0389712 3300044712 Bacteria 1563
86 Ga0451576_0000001 3300045051 Bacteria 1802108
87 Ga0451576_0001235 3300045051 Bacteria 45186
88 Ga0451576_0001584 3300045051 Bacteria 38234
89 Ga0451576_0002192 3300045051 Bacteria 30124
90 Ga0451576_0003468 3300045051 Bacteria 21616
91 Ga0451576_0104957 3300045051 Bacteria 2939
92 Ga0451576_0114996 3300045051 Bacteria 2801
93 Ga0451576_0134767 3300045051 Bacteria 2575
94 Ga0451576_0177922 3300045051 Bacteria 2221
95 Ga0451576_0209684 3300045051 Bacteria 2035
96 Ga0451576_0255518 3300045051 Bacteria 1831
97 Ga0496116_0000005 3300048919 Bacteria 827804
98 Ga0496121_0000603 3300048924 Bacteria 67446
99 Ga0501034_0042090 3300049571 Bacteria 4623

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044673 Ga0453683_0019028 Ga0453683_0019028_1683_2804 369
2 3300044673 Ga0453683_0000060 Ga0453683_0000060_64576_65697 370
3 3300044712 Ga0453684_0003129 Ga0453684_0003129_34557_35678 370
4 3300045051 Ga0451576_0000001 Ga0451576_0000001_1088820_1089941 370
5 3300028573 Ga0265334_10002504 Ga0265334_100025045 371
6 3300031727 Ga0316576_10024764 Ga0316576_100247645 372
7 3300044712 Ga0453684_0033129 Ga0453684_0033129_1823_3073 372
8 3300044673 Ga0453683_0000533 Ga0453683_0000533_39698_41008 374
9 3300044712 Ga0453684_0326580 Ga0453684_0326580_414_1586 374
10 3300042876 Ga0451577_0008151 Ga0451577_0008151_675_2018 375
11 3300044673 Ga0453683_0000121 Ga0453683_0000121_35756_37099 375
12 3300044712 Ga0453684_0003633 Ga0453684_0003633_2883_4226 375
13 3300031727 Ga0316576_10191399 Ga0316576_101913992 377
14 3300036712 Ga0316584_0009082 Ga0316584_0009082_4505_5743 377
15 3300045051 Ga0451576_0104957 Ga0451576_0104957_1522_2868 378
16 3300042876 Ga0451577_0005749 Ga0451577_0005749_9703_11046 380
17 3300031727 Ga0316576_10006257 Ga0316576_100062572 381
18 3300031728 Ga0316578_10017160 Ga0316578_100171605 381
19 3300035398 Ga0316574_0075705 Ga0316574_0075705_568_1866 381
20 3300036647 Ga0316582_0021270 Ga0316582_0021270_1056_2354 381
21 3300036712 Ga0316584_0073004 Ga0316584_0073004_146_1444 381
22 3300006173 Ga0070716_100032188 Ga0070716_1000321882 382
23 3300031250 Ga0265331_10038461 Ga0265331_100384612 383
24 3300010375 Ga0105239_10035936 Ga0105239_100359362 384
25 3300044712 Ga0453684_0389712 Ga0453684_0389712_279_1529 385
26 3300028800 Ga0265338_10017046 Ga0265338_1001704610 387
27 3300035398 Ga0316574_0113317 Ga0316574_0113317_454_1716 388
28 3300044712 Ga0453684_0370906 Ga0453684_0370906_202_1500 389
29 3300044673 Ga0453683_0021598 Ga0453683_0021598_1587_2927 391
30 3300049571 Ga0501034_0042090 Ga0501034_0042090_1335_2636 391
31 3300031727 Ga0316576_10061977 Ga0316576_100619772 392
32 3300042876 Ga0451577_0011775 Ga0451577_0011775_1722_3062 393
33 3300044673 Ga0453683_0011168 Ga0453683_0011168_368_1699 398
34 3300044712 Ga0453684_0083192 Ga0453684_0083192_670_2004 398
35 3300031727 Ga0316576_10016876 Ga0316576_100168765 401
36 3300031727 Ga0316576_10027571 Ga0316576_100275712 401
37 3300031728 Ga0316578_10028914 Ga0316578_100289142 401
38 3300042876 Ga0451577_0029211 Ga0451577_0029211_763_2037 402
39 3300044712 Ga0453684_0065791 Ga0453684_0065791_3041_4324 402
40 3300028573 Ga0265334_10004739 Ga0265334_100047394 403
41 3300031247 Ga0265340_10015465 Ga0265340_100154654 403
42 3300042876 Ga0451577_0000314 Ga0451577_0000314_5383_6699 403
43 3300042876 Ga0451577_0195320 Ga0451577_0195320_311_1636 403
44 3300044712 Ga0453684_0000453 Ga0453684_0000453_159664_160980 403
45 3300044712 Ga0453684_0283502 Ga0453684_0283502_562_1869 403
46 3300048919 Ga0496116_0000005 Ga0496116_0000005_350334_351620 403
47 3300048924 Ga0496121_0000603 Ga0496121_0000603_20983_22269 403
48 3300031995 Ga0307409_100048058 Ga0307409_1000480582 404
49 3300042876 Ga0451577_0000132 Ga0451577_0000132_41741_43096 404
50 3300044712 Ga0453684_0000319 Ga0453684_0000319_76039_77394 404
51 3300044712 Ga0453684_0125103 Ga0453684_0125103_1010_2479 404
52 3300033524 Ga0316592_1020414 Ga0316592_10204141 405
53 3300044712 Ga0453684_0000314 Ga0453684_0000314_168935_170242 406
54 3300044712 Ga0453684_0050734 Ga0453684_0050734_3834_5189 406
55 3300038726 Ga0400490_30487 Ga0400490_30487_782_2068 407
56 3300038742 Ga0400486_05505 Ga0400486_05505_1507_2922 407
57 3300042876 Ga0451577_0000632 Ga0451577_0000632_13443_14780 407
58 3300044712 Ga0453684_0003070 Ga0453684_0003070_15966_17303 407
59 3300044712 Ga0453684_0122958 Ga0453684_0122958_1190_2551 407
60 3300044712 Ga0453684_0178908 Ga0453684_0178908_154_1497 407
61 3300042876 Ga0451577_0181942 Ga0451577_0181942_44_1369 408
62 3300044712 Ga0453684_0003317 Ga0453684_0003317_11744_13081 408
63 3300045051 Ga0451576_0134767 Ga0451576_0134767_716_2080 408
64 3300031251 Ga0265327_10044771 Ga0265327_100447713 409
65 3300037418 Ga0395900_0014774 Ga0395900_0014774_2704_4026 409
66 3300037466 Ga0395898_0005382 Ga0395898_0005382_10204_11526 409
67 3300044712 Ga0453684_0001369 Ga0453684_0001369_36317_37699 409
68 3300035084 Ga0373928_0000116 Ga0373928_0000116_7294_8616 410
69 3300042876 Ga0451577_0036058 Ga0451577_0036058_2105_3487 411
70 3300044673 Ga0453683_0001283 Ga0453683_0001283_17624_18976 411
71 3300044712 Ga0453684_0012299 Ga0453684_0012299_6767_8107 411
72 3300045051 Ga0451576_0003468 Ga0451576_0003468_12557_13846 411
73 3300036712 Ga0316584_0002947 Ga0316584_0002947_4056_5309 412
74 3300044712 Ga0453684_0093280 Ga0453684_0093280_2390_3655 412
75 3300045051 Ga0451576_0255518 Ga0451576_0255518_52_1374 412
76 iso_pu_bacteria 2740891818 2740995322 412
77 3300045051 Ga0451576_0177922 Ga0451576_0177922_131_1477 413
78 3300044673 Ga0453683_0015312 Ga0453683_0015312_3322_4644 414
79 3300044673 Ga0453683_0055766 Ga0453683_0055766_173_1540 414
80 3300044712 Ga0453684_0000052 Ga0453684_0000052_27586_28947 414
81 3300044712 Ga0453684_0141364 Ga0453684_0141364_377_1654 414
82 3300045051 Ga0451576_0209684 Ga0451576_0209684_76_1398 414
83 3300010375 Ga0105239_10012488 Ga0105239_100124884 415
84 3300042876 Ga0451577_0000127 Ga0451577_0000127_51095_52465 416
85 3300042876 Ga0451577_0010133 Ga0451577_0010133_1658_2998 416
86 3300044673 Ga0453683_0000002 Ga0453683_0000002_438411_439742 416
87 3300044673 Ga0453683_0000102 Ga0453683_0000102_107748_109088 416
88 3300044673 Ga0453683_0078743 Ga0453683_0078743_448_1794 416
89 3300044712 Ga0453684_0002779 Ga0453684_0002779_38741_40111 416
90 3300044712 Ga0453684_0006792 Ga0453684_0006792_10529_11893 416
91 3300044712 Ga0453684_0007092 Ga0453684_0007092_10606_11946 416
92 3300044712 Ga0453684_0018747 Ga0453684_0018747_209_1540 416
93 3300044712 Ga0453684_0046529 Ga0453684_0046529_873_2201 416
94 3300045051 Ga0451576_0001235 Ga0451576_0001235_11057_12397 416
95 3300045051 Ga0451576_0001584 Ga0451576_0001584_5118_6455 416
96 3300045051 Ga0451576_0002192 Ga0451576_0002192_24517_25848 416
97 3300045051 Ga0451576_0114996 Ga0451576_0114996_680_2044 416
98 3300005327 Ga0070658_10003902 Ga0070658_100039024 419
99 3300010375 Ga0105239_10280921 Ga0105239_102809212 419
100 3300025909 Ga0207705_10010782 Ga0207705_100107823 419

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00270

DEAD

DEAD/DEAH box helicase

49

216

0.96

PF00271

Helicase_C

Helicase conserved C-terminal domain

249

358

0.94

PF04851

ResIII

Type III restriction enzyme, res subunit

46

211

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
3fe2-assembly2.cif.gz_B human dead-box rna helicase ddx5 (p68), conserved domain i in complex with adp 0.9686 1 210
4px9-assembly3.cif.gz_C dead-box rna helicase ddx3x domain 1 with n-terminal atp-binding loop 0.9686 2 210
4px9-assembly2.cif.gz_B dead-box rna helicase ddx3x domain 1 with n-terminal atp-binding loop 0.9685 2 210
4kbg-assembly1.cif.gz_A almost closed conformation of the helicase core of the rna helicase hera 0.9674 1 210
4kbg-assembly1.cif.gz_A almost closed conformation of the helicase core of the rna helicase hera 0.9628 1 210
ID Description Score Start End Superfamily
af_P25888_1_211_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.983 1 209 3.40.50.300
af_Q7JQN4_104_363_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9798 2 206 3.40.50.300
af_Q54CD8_165_435_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9778 2 208 3.40.50.300
af_Q0INC5_134_401_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9775 2 208 3.40.50.300
af_A0A1D6MHG8_113_357_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9761 10 206 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A5E4CZ51-F1-model_v4 RNA helicase (EC 3.6.4.13) 0.9722 8 370 GO:0003676
GO:0003724
GO:0005524
GO:0005829
GO:0016787
AF-A0A853KMN1-F1-model_v4 deleted 0.9719 1 368
AF-U6K9J8-F1-model_v4 ATP-dependent RNA helicase, putative 0.9716 1 209 GO:0003723
GO:0003724
GO:0005524
GO:0005829
GO:0016787
AF-A0A7C7IK15-F1-model_v4 DEAD/DEAH box helicase 0.9711 3 210 GO:0003676
GO:0003724
GO:0005524
GO:0005829
GO:0016787
AF-L8H5X4-F1-model_v4 DEAD/DEAH box helicase domain containing protein 0.971 2 370 GO:0003676
GO:0003724
GO:0005524
GO:0005829
GO:0016787

Feature Viewer

pLDDT pTM Quality
81.76 0.61 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map