F003646

General Info

Members Datasets Scaffolds Average Seq Length
100 91 74 501

Family's Representative Sequence

Representative Sequence 3300028558|Ga0265326_10013609|Ga0265326_100136092
Length 567
Sequence VTSGDASTRALAEAIDAAEPTETRGLGELIARLDAEGRLRGGGSGGTAEALRREASGGPDRSDLPIRGIAFDSRAVKPGFLFVAVPGDHADGHDYAAAAVARGASAVLVERLIADLPARQIVVDRGRGALAVAAAWWYGDPSRELGVVGITGTDGKTTTSFLATAVLEAAGISTGMLTTAELKVGGLRGPNPEHVTTPEAPQLQRTLRAMVDAADAAAVLETTSHGLALDRVGGVDYDVAIFTNLTHEHLELHGTFEAYRAAKLSLFERLGGGREPGDLRPGKHLPRMWPRTAIVNHDDPSAPLFEMAAASAGAVLIKFGLSPQADVRAAAVTEDARRLRIDVQTPRWRGEVELQLMGRFNVYNSLAAIALGEALELDPAAIRAGVSGVRGVPGRMERIECGQEFGVIVDYAHSPASLQTVLDQLAPATGPGAGLIVVFGSAGERDVRKRPMMGRIAGERCRLVVVTDEDPRGEDREAILDQIAAGAEAAGKRRGDDLLCIPDRREAIAAAFERAEPGDLVLLAGKGHEQSIIMGDGPRAWDERTEAVAALRRMGFAGAGSLEAIGR

Samples

Sample ID Description Type Environment
1 2510917027 Brevibacillus sp. CF112 Isolate Rhizosphere
2 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
3 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
4 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
5 2738541299 Paenisporosarcina sp. OV554 Isolate Unclassified
6 2744054657 Brevibacillus sp. SKDU10 Isolate Unclassified
7 2808606364 Bacillus sp. SLBN-3 Isolate Unclassified
8 2816332336 Brevibacillus laterosporus ZQ2 Isolate Unclassified
9 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
10 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
11 2857472729 Cohnella sp. R-74144 Isolate Unclassified
12 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
13 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
14 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
15 2898907183 Brevibacillus sp. SYP-B805 Isolate Rhizosphere
16 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
17 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
18 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
19 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
20 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
21 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
22 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
23 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere
24 3006826541 Bacillus haikouensis CrR16 Isolate Unclassified
25 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
26 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
27 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
28 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
29 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
30 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
31 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
32 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
33 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
36 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
37 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
38 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
39 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
45 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
46 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
47 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
52 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
53 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
54 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
55 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
56 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
57 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
58 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
59 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
60 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
61 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
62 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
63 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
64 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
65 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
66 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
67 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
68 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
71 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
72 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
73 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
74 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
75 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
76 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
77 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
78 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
79 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
80 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
81 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
83 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
84 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
85 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
86 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
87 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
88 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
89 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
90 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
91 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 73
Metatranscriptomes 1
Isolates 26

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2
Nodule 1
Rhizoplane 5
Rhizosphere 72
Stem 0
Stem Tuber 0
Unclassified 20

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055532_1001190 3300003758 Bacteria 7817
2 Ga0070660_100043975 3300005339 Unclassified 3414
3 Ga0070659_100020934 3300005366 Unclassified 4974
4 Ga0070706_100025896 3300005467 Bacteria 5398
5 Ga0070707_100023915 3300005468 Bacteria 5779
6 Ga0070707_100025111 3300005468 Bacteria 5652
7 Ga0070698_100012488 3300005471 Bacteria 8992
8 Ga0070698_100037629 3300005471 Bacteria 4988
9 Ga0070699_100020757 3300005518 Bacteria 5665
10 Ga0070697_100048985 3300005536 Bacteria 3427
11 Ga0070696_100000522 3300005546 Bacteria 24349
12 Ga0075428_100001121 3300006844 Bacteria 28599
13 Ga0075434_100043242 3300006871 Bacteria 4467
14 Ga0105251_10036272 3300009011 Bacteria 2427
15 Ga0105244_10000241 3300009036 Bacteria 56117
16 Ga0105245_10033677 3300009098 Bacteria 4541
17 Ga0114129_10028177 3300009147 Bacteria 7958
18 Ga0105249_10203247 3300009553 Bacteria 1940
19 Ga0157374_10000093 3300013296 Bacteria 84512
20 Ga0157378_10055436 3300013297 Bacteria 3531
21 Ga0157378_10205575 3300013297 Bacteria 1865
22 Ga0163163_10188960 3300014325 Unclassified 2108
23 Ga0157376_10000397 3300014969 Bacteria 28315
24 Ga0213875_10000043 3300021388 Bacteria 152637
25 Ga0224712_10000406 3300022467 Bacteria 8470
26 Ga0209147_100057 3300025229 Bacteria 253870
27 Ga0207655_1000350 3300025728 Bacteria 66830
28 Ga0207690_10045460 3300025932 Unclassified 2901
29 Ga0209998_10000719 3300027717 Bacteria 8751
30 Ga0265326_10013609 3300028558 Bacteria 2378
31 Ga0265319_1003871 3300028563 Bacteria 7642
32 Ga0265318_10008405 3300028577 Bacteria 4599
33 Ga0265323_10015167 3300028653 Bacteria 3034
34 Ga0265338_10011619 3300028800 Bacteria 10148
35 Ga0265320_10010796 3300031240 Bacteria 5413
36 Ga0265320_10034812 3300031240 Bacteria 2557
37 Ga0265325_10026125 3300031241 Bacteria 3165
38 Ga0265329_10008327 3300031242 Bacteria 3939
39 Ga0265339_10034364 3300031249 Bacteria 2850
40 Ga0265339_10044337 3300031249 Bacteria 2454
41 Ga0265331_10037783 3300031250 Bacteria 2363
42 Ga0265331_10056705 3300031250 Bacteria 1859
43 Ga0265316_10042666 3300031344 Bacteria 3623
44 Ga0265314_10031605 3300031711 Bacteria 3905
45 Ga0316576_10052266 3300031727 Bacteria 2975
46 Ga0307405_10022611 3300031731 Bacteria 3558
47 Ga0307410_10011963 3300031852 Bacteria 4991
48 Ga0307416_100040134 3300032002 Bacteria 3633
49 Ga0373943_0031146 3300035170 Bacteria 2529
50 Ga0436364_0413139 3300037853 Bacteria 254582
51 Ga0453684_0323134 3300044712 Bacteria 1747
52 Ga0495618_0014051 3300046514 Bacteria 4875
53 Ga0495640_0027269 3300046533 Bacteria 4121
54 Ga0495626_0055089 3300048091 Bacteria 1825
55 Ga0495626_0069022 3300048091 Bacteria 1593
56 Ga0496101_0132657 3300048904 Bacteria 1893
57 Ga0496105_0003525 3300048908 Bacteria 11602
58 Ga0496108_0003744 3300048911 Bacteria 12189
59 Ga0496108_0230532 3300048911 Unclassified 1610
60 Ga0496109_0009454 3300048912 Bacteria 8311
61 Ga0496117_0072798 3300048920 Bacteria 2295
62 Ga0496122_0040676 3300048925 Bacteria 3689
63 Ga0496123_0026685 3300048926 Bacteria 4320
64 Ga0496126_0003449 3300048929 Bacteria 19951
65 Ga0501039_0067797 3300049575 Bacteria 2771
66 Ga0501072_0082347 3300049588 Bacteria 2551
67 Ga0501074_0063341 3300049590 Bacteria 2664
68 Ga0501080_0024939 3300049742 Bacteria 5546
69 nmdc:mga05p37_150_c1 3300050507 Bacteria 65679
70 Ga0495601_0005359 3300053077 Bacteria 7472
71 Ga0495601_0052391 3300053077 Bacteria 2577
72 Ga0495595_0007568 3300053084 Unclassified 4446
73 Ga0495619_0002494 3300053085 Bacteria 12046
74 Ga0530510_0172829 3300061734 Bacteria 1601

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048925 Ga0496122_0040676 Ga0496122_0040676_2431_3663 406
2 3300028800 Ga0265338_10011619 Ga0265338_100116199 450
3 3300031240 Ga0265320_10034812 Ga0265320_100348122 453
4 3300031242 Ga0265329_10008327 Ga0265329_100083272 453
5 3300031249 Ga0265339_10044337 Ga0265339_100443372 453
6 3300031250 Ga0265331_10056705 Ga0265331_100567052 453
7 3300049575 Ga0501039_0067797 Ga0501039_0067797_1051_2628 456
8 3300006844 Ga0075428_100001121 Ga0075428_1000011212 461
9 3300031852 Ga0307410_10011963 Ga0307410_100119634 461
10 3300032002 Ga0307416_100040134 Ga0307416_1000401342 461
11 3300046514 Ga0495618_0014051 Ga0495618_0014051_2282_3796 462
12 3300046533 Ga0495640_0027269 Ga0495640_0027269_650_2164 462
13 3300053077 Ga0495601_0005359 Ga0495601_0005359_4190_5704 462
14 3300053084 Ga0495595_0007568 Ga0495595_0007568_1255_2769 462
15 3300053085 Ga0495619_0002494 Ga0495619_0002494_6545_8059 462
16 3300048904 Ga0496101_0132657 Ga0496101_0132657_217_1860 465
17 3300048908 Ga0496105_0003525 Ga0496105_0003525_6647_8290 465
18 3300048911 Ga0496108_0003744 Ga0496108_0003744_2170_3813 465
19 3300048912 Ga0496109_0009454 Ga0496109_0009454_5839_7482 465
20 3300013296 Ga0157374_10000093 Ga0157374_1000009353 466
21 3300014969 Ga0157376_10000397 Ga0157376_100003974 467
22 3300005536 Ga0070697_100048985 Ga0070697_1000489852 468
23 iso_pu_bacteria 2512564013 2512636369 468
24 3300005339 Ga0070660_100043975 Ga0070660_1000439753 469
25 3300005366 Ga0070659_100020934 Ga0070659_1000209344 469
26 3300025932 Ga0207690_10045460 Ga0207690_100454602 469
27 3300048911 Ga0496108_0230532 Ga0496108_0230532_38_1576 469
28 3300027717 Ga0209998_10000719 Ga0209998_100007193 470
29 3300061734 Ga0530510_0172829 Ga0530510_0172829_23_1456 473
30 3300014325 Ga0163163_10188960 Ga0163163_101889602 474
31 3300009147 Ga0114129_10028177 Ga0114129_100281774 476
32 3300050507 nmdc:mga05p37_150_c1 nmdc:mga05p37_150_c1_59606_61198 476
33 3300005468 Ga0070707_100025111 Ga0070707_1000251113 477
34 3300005518 Ga0070699_100020757 Ga0070699_1000207573 477
35 3300049590 Ga0501074_0063341 Ga0501074_0063341_424_1929 477
36 3300044712 Ga0453684_0323134 Ga0453684_0323134_241_1689 478
37 3300053077 Ga0495601_0052391 Ga0495601_0052391_708_2360 478
38 iso_pu_bacteria 2744054657 2745168497 479
39 iso_pu_bacteria 2816332336 2817619684 479
40 3300028563 Ga0265319_1003871 Ga0265319_10038713 480
41 3300031240 Ga0265320_10010796 Ga0265320_100107962 480
42 3300031241 Ga0265325_10026125 Ga0265325_100261252 480
43 3300031249 Ga0265339_10034364 Ga0265339_100343642 480
44 3300031344 Ga0265316_10042666 Ga0265316_100426662 480
45 3300031711 Ga0265314_10031605 Ga0265314_100316052 480
46 iso_pu_bacteria 2738541299 2738837432 485
47 iso_pu_bacteria 2808606364 2808868294 485
48 iso_pu_bacteria 2980125574 2980125808 485
49 iso_pu_bacteria 3006826541 3006829961 485
50 3300005471 Ga0070698_100037629 Ga0070698_1000376292 486
51 iso_pu_bacteria 2857591370 2857593122 486
52 iso_pu_bacteria 2524023129 2524186575 487
53 iso_pu_bacteria 2593339198 2595316467 487
54 iso_pu_bacteria 2857472729 2857473475 487
55 iso_pu_bacteria 2864997549 2864999947 487
56 iso_pu_bacteria 2889295896 2889296133 487
57 iso_pu_bacteria 2898907183 2898907356 487
58 iso_pu_bacteria 2981284811 2981287876 487
59 iso_pu_bacteria 2981289755 2981292411 487
60 iso_pu_bacteria 2981980479 2981983495 487
61 iso_pu_bacteria 2981985349 2981988467 487
62 iso_pu_bacteria 8002317523 8002322026 487
63 iso_pu_bacteria 8046991243 8046997604 487
64 iso_pu_bacteria 2857460504 2857463089 488
65 iso_pu_bacteria 2857465823 2857471142 488
66 iso_pu_bacteria 2915597211 2915602460 488
67 iso_pu_bacteria 2915606848 2915612141 488
68 iso_pu_bacteria 2929183550 2929187623 488
69 3300009011 Ga0105251_10036272 Ga0105251_100362722 490
70 3300009036 Ga0105244_10000241 Ga0105244_1000024132 490
71 3300025728 Ga0207655_1000350 Ga0207655_100035034 490
72 3300048091 Ga0495626_0055089 Ga0495626_0055089_287_1759 490
73 3300049742 Ga0501080_0024939 Ga0501080_0024939_3000_4499 490
74 3300048091 Ga0495626_0069022 Ga0495626_0069022_39_1526 491
75 3300048920 Ga0496117_0072798 Ga0496117_0072798_692_2182 492
76 3300048926 Ga0496123_0026685 Ga0496123_0026685_1535_3025 492
77 3300048929 Ga0496126_0003449 Ga0496126_0003449_4616_6106 492
78 3300031727 Ga0316576_10052266 Ga0316576_100522662 494
79 3300049588 Ga0501072_0082347 Ga0501072_0082347_343_1860 494
80 3300021388 Ga0213875_10000043 Ga0213875_10000043147 495
81 3300037853 Ga0436364_0413139 Ga0436364_0413139_107440_108951 495
82 3300035170 Ga0373943_0031146 Ga0373943_0031146_98_1693 496
83 3300005467 Ga0070706_100025896 Ga0070706_1000258964 497
84 3300005468 Ga0070707_100023915 Ga0070707_1000239152 497
85 3300005471 Ga0070698_100012488 Ga0070698_1000124885 497
86 3300005546 Ga0070696_100000522 Ga0070696_10000052210 497
87 3300006871 Ga0075434_100043242 Ga0075434_1000432422 497
88 3300009098 Ga0105245_10033677 Ga0105245_100336774 497
89 3300013297 Ga0157378_10055436 Ga0157378_100554362 497
90 3300013297 Ga0157378_10205575 Ga0157378_102055751 497
91 3300028558 Ga0265326_10013609 Ga0265326_100136092 497
92 3300028653 Ga0265323_10015167 Ga0265323_100151672 497
93 3300031250 Ga0265331_10037783 Ga0265331_100377832 497
94 iso_pu_bacteria 2510917027 2511179148 497
95 3300009553 Ga0105249_10203247 Ga0105249_102032472 498
96 3300025229 Ga0209147_100057 Ga0209147_100057197 498
97 3300028577 Ga0265318_10008405 Ga0265318_100084054 498
98 3300031731 Ga0307405_10022611 Ga0307405_100226112 498
99 3300022467 Ga0224712_10000406 Ga0224712_100004066 499
100 3300003758 Ga0055532_1001190 Ga0055532_10011903 503

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08245

Mur_ligase_M

Mur ligase middle domain

150

372

0.96

PF02875

Mur_ligase_C

Mur ligase, glutamate ligase domain

394

527

0.94

PF01225

Mur_ligase

Mur ligase family, catalytic domain

65

138

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
4bub-assembly1.cif.gz_A crystal structure of mure ligase from thermotoga maritima in complex with adp 0.9181 6 503
4bub-assembly1.cif.gz_A crystal structure of mure ligase from thermotoga maritima in complex with adp 0.9163 6 503
4bub-assembly2.cif.gz_B crystal structure of mure ligase from thermotoga maritima in complex with adp 0.9145 6 503
4bub-assembly2.cif.gz_B crystal structure of mure ligase from thermotoga maritima in complex with adp 0.9127 6 503
2xja-assembly4.cif.gz_D structure of mure from m.tuberculosis with dipeptide and adp 0.9073 6 499
ID Description Score Start End Superfamily
4c13A02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.962 108 346 3.40.1190.10
2wtzD03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9596 358 495 3.90.190.20
4c13A02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9541 108 346 3.40.1190.10
af_I1KPB4_561_737_3.90.190.20 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9536 350 502 3.90.190.20
1e8cB03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9534 348 490 3.90.190.20
ID Description Score Start End GO Terms
AF-A0A496UJS6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9781 301 499 GO:0005524
GO:0009058
GO:0016881
AF-A0A352UQN6-F1-model_v4 deleted 0.9765 6 497
AF-A0A2V6AFD5-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9757 1 179 GO:0005524
GO:0009058
GO:0016881
AF-A0A2N1ZZU6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (Meso-A2pm-adding enzyme) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (UDP-MurNAc-tripeptide synthetase) (UDP-N-acetylmuramyl-tripeptide synthetase) 0.9723 6 499 GO:0000287
GO:0005524
GO:0005737
GO:0008360
GO:0008765
GO:0009252
GO:0051301
GO:0071555
AF-A0A0B0HYV2-F1-model_v4 deleted 0.9718 6 279

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Predicted Structure (AlphaFold2)

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