F002870

General Info

Members Datasets Scaffolds Average Seq Length
100 86 62 430

Family's Representative Sequence

Representative Sequence 3300009553|Ga0105249_10079124|Ga0105249_100791242
Length 462
Sequence VGARAAARGTAARPRLADAAVGARPMTDPAAGAHLSRALREFVGSARFAQALTLLAVGFAFSTHAVRSLIGWPGLVAALVGLLVLCGLSLVARWRAVEWYGILPITILVFVGWCAASVLWSSTPGATALRVVYLVAFAVIGVYVALMRDTIQIVRAFGDVMRVLLGVSIGLEVLAGILIDAPIAVLGIQGNIANLGPIQGVFGSRNLLGFVALIALLTFIVEWRTKIVQRGRAIGSIVLAALCIVLSGSPTTWVALGAALLALAALYGLRRAAPATRWRWQLVLLAAGLAALVTAWILRIRIIELLDARGEFDVRLDVWRELSRYLNQNPLQGWGWVGAWPDTAPYTWIELATGRPHSSALSAYIDVYFQVGVIGALMFIALVGVALVRAWLLASSRRSVVYVWPALMLVVIAVTSFAESFALGEGGWMLLVVCAVKAARDMSWRDALAAGRPPAPTHEELT

Samples

Sample ID Description Type Environment
1 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
2 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
3 2643221546 Microbacterium sp. Root53 Isolate Unclassified
4 2643221549 Agromyces sp. Root1464 Isolate Unclassified
5 2643221553 Microbacterium sp. Root553 Isolate Unclassified
6 2643221566 Microbacterium sp. Root166 Isolate Unclassified
7 2643221572 Leifsonia sp. Root60 Isolate Unclassified
8 2643221597 Microbacterium sp. Root180 Isolate Unclassified
9 2643221619 Agromyces sp. Root81 Isolate Unclassified
10 2643221630 Microbacterium sp. Root322 Isolate Unclassified
11 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
12 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
13 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
14 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
15 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
16 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
17 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
18 2808606372 Agromyces sp. 23-23 Isolate Unclassified
19 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
20 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
21 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
22 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
23 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
24 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
25 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
26 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
27 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
28 2919395869 Microbacterium resistens 2980 Isolate Unclassified
29 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
30 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
31 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
32 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
33 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
34 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
35 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
36 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
37 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
38 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
39 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
40 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
41 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
42 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
43 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
46 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
47 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
48 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
55 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
56 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
57 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
58 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
59 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
60 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
61 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
62 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
63 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
64 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
65 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
66 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
67 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
68 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
69 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
70 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
71 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
72 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
73 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
74 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
75 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
76 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
77 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
78 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
79 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
80 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
82 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
83 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
84 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
85 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
86 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 60
Metatranscriptomes 2
Isolates 38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4
Nodule 0
Rhizoplane 9
Rhizosphere 39
Stem 0
Stem Tuber 0
Unclassified 48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1106877 3300003578 Bacteria 3480
2 Ga0006562J51391_1106878 3300003578 Bacteria 10460
3 Ga0070668_100021734 3300005347 Bacteria 4848
4 Ga0070665_100189725 3300005548 Bacteria 2056
5 Ga0068862_100218465 3300005844 Bacteria 1725
6 Ga0075364_10007834 3300006051 Bacteria 6359
7 Ga0075364_10020052 3300006051 Bacteria 4204
8 Ga0075367_10003032 3300006178 Bacteria 7867
9 Ga0105244_10093670 3300009036 Bacteria 1476
10 Ga0105249_10079124 3300009553 Bacteria 3051
11 Ga0157369_10227362 3300013105 Bacteria 1951
12 Ga0171462_1001 3300013250 Bacteria 1135406
13 Ga0163163_10300017 3300014325 Bacteria 1659
14 Ga0209646_1000134 3300025246 Bacteria 124492
15 Ga0207643_10053039 3300025908 Bacteria 2303
16 Ga0207712_10086814 3300025961 Bacteria 2293
17 Ga0207668_10195308 3300025972 Bacteria 1607
18 Ga0207675_100134861 3300026118 Bacteria 2342
19 Ga0268266_10165563 3300028379 Bacteria 2003
20 Ga0268265_10083947 3300028380 Bacteria 2524
21 Ga0307408_100140461 3300031548 Bacteria 1896
22 Ga0439465_0020382 3300041413 Bacteria 2076
23 Ga0439449_0019727 3300042007 Bacteria 2527
24 Ga0466968_0020277 3300044735 Bacteria 2682
25 Ga0466960_0024951 3300044901 Bacteria 2701
26 Ga0495627_000739 3300046453 Bacteria 24592
27 Ga0495638_0089725 3300046460 Bacteria 1854
28 Ga0495645_0013170 3300046543 Bacteria 5847
29 Ga0496100_0008828 3300048903 Bacteria 5637
30 Ga0496101_0120451 3300048904 Bacteria 1983
31 Ga0496104_0116477 3300048907 Bacteria 2564
32 Ga0496109_0048126 3300048912 Bacteria 3879
33 Ga0496111_0077329 3300048914 Bacteria 2426
34 Ga0496113_0135553 3300048916 Bacteria 1934
35 Ga0496113_0204486 3300048916 Bacteria 1570
36 Ga0496114_0085984 3300048917 Bacteria 2664
37 Ga0496115_0018992 3300048918 Bacteria 5285
38 Ga0496116_0019931 3300048919 Bacteria 5114
39 Ga0496117_0000497 3300048920 Bacteria 64914
40 Ga0496117_0003741 3300048920 Bacteria 17422
41 Ga0496117_0041245 3300048920 Bacteria 3384
42 Ga0496118_0003749 3300048921 Bacteria 18789
43 Ga0496118_0030556 3300048921 Bacteria 4493
44 Ga0496119_0003193 3300048922 Bacteria 17177
45 Ga0496119_0007083 3300048922 Bacteria 10200
46 Ga0496119_0014244 3300048922 Bacteria 6244
47 Ga0496119_0099748 3300048922 Bacteria 1633
48 Ga0496120_0004440 3300048923 Bacteria 11762
49 Ga0496120_0071153 3300048923 Bacteria 1910
50 Ga0496122_0000020 3300048925 Bacteria 401675
51 Ga0496122_0000522 3300048925 Bacteria 79377
52 Ga0496123_0000003 3300048926 Bacteria 866556
53 Ga0496123_0000251 3300048926 Bacteria 108664
54 Ga0496124_0007625 3300048927 Bacteria 11465
55 Ga0496124_0009556 3300048927 Bacteria 9964
56 Ga0496125_0001049 3300048928 Bacteria 42719
57 Ga0496125_0080963 3300048928 Bacteria 2483
58 Ga0496126_0017728 3300048929 Bacteria 7090
59 Ga0501038_0006847 3300049574 Bacteria 10531
60 Ga0501070_0003623 3300049586 Bacteria 13336
61 Ga0501076_0099992 3300049592 Bacteria 2337
62 nmdc:mga00v17_45578_c1 3300050491 Bacteria 2650

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048925 Ga0496122_0000522 Ga0496122_0000522_78047_79357 391
2 3300048926 Ga0496123_0000251 Ga0496123_0000251_36000_37310 391
3 3300048927 Ga0496124_0007625 Ga0496124_0007625_9022_10332 391
4 3300048928 Ga0496125_0080963 Ga0496125_0080963_1100_2410 391
5 3300048916 Ga0496113_0135553 Ga0496113_0135553_11_1228 394
6 3300049574 Ga0501038_0006847 Ga0501038_0006847_1623_2927 396
7 3300049592 Ga0501076_0099992 Ga0501076_0099992_894_2162 398
8 3300025246 Ga0209646_1000134 Ga0209646_100013432 399
9 iso_pu_bacteria 2643221549 2643768171 400
10 3300046543 Ga0495645_0013170 Ga0495645_0013170_4023_5264 402
11 3300048917 Ga0496114_0085984 Ga0496114_0085984_298_1539 402
12 3300048916 Ga0496113_0204486 Ga0496113_0204486_248_1528 408
13 3300048922 Ga0496119_0099748 Ga0496119_0099748_25_1284 408
14 3300048912 Ga0496109_0048126 Ga0496109_0048126_957_2237 409
15 3300048914 Ga0496111_0077329 Ga0496111_0077329_1037_2317 409
16 iso_pu_bacteria 8046352972 8046355758 411
17 3300044901 Ga0466960_0024951 Ga0466960_0024951_1039_2538 414
18 3300048920 Ga0496117_0003741 Ga0496117_0003741_5470_6798 414
19 3300048921 Ga0496118_0030556 Ga0496118_0030556_3108_4436 414
20 3300013105 Ga0157369_10227362 Ga0157369_102273622 415
21 3300046453 Ga0495627_000739 Ga0495627_000739_12304_13584 415
22 3300048907 Ga0496104_0116477 Ga0496104_0116477_235_1515 415
23 3300042007 Ga0439449_0019727 Ga0439449_0019727_479_1786 416
24 iso_pu_bacteria 2808606372 2808902899 416
25 iso_pu_bacteria 2643221542 2643734208 417
26 iso_pu_bacteria 2643221553 2643785261 417
27 iso_pu_bacteria 2643221630 2644170794 417
28 iso_pu_bacteria 2643221724 2644679597 417
29 iso_pu_bacteria 2721755702 2723642905 417
30 iso_pu_bacteria 2728369380 2730229106 417
31 iso_pu_bacteria 2747842429 2747952613 417
32 iso_pu_bacteria 2852663356 2852664680 417
33 iso_pu_bacteria 2857723135 2857723297 417
34 iso_pu_bacteria 2946041624 2946043620 417
35 iso_pu_bacteria 2946080515 2946081456 417
36 iso_pu_bacteria 8004182704 8004185960 417
37 iso_pu_bacteria 2643221572 2643874619 418
38 iso_pu_bacteria 2643221669 2644381675 418
39 iso_pu_bacteria 2852646457 2852646846 418
40 iso_pu_bacteria 2895660088 2895663011 418
41 iso_pu_bacteria 2919395869 2919396805 418
42 iso_pu_bacteria 2935409751 2935413510 418
43 iso_pu_bacteria 2945968032 2945971299 418
44 3300048922 Ga0496119_0003193 Ga0496119_0003193_8940_10277 419
45 3300048923 Ga0496120_0071153 Ga0496120_0071153_449_1786 419
46 iso_pu_bacteria 2643221619 2644111590 420
47 iso_pu_bacteria 2977264416 2977265863 420
48 3300006051 Ga0075364_10007834 Ga0075364_100078345 421
49 3300031548 Ga0307408_100140461 Ga0307408_1001404612 421
50 3300048919 Ga0496116_0019931 Ga0496116_0019931_245_1549 421
51 3300048920 Ga0496117_0000497 Ga0496117_0000497_42544_43842 421
52 3300048920 Ga0496117_0041245 Ga0496117_0041245_1997_3301 421
53 3300048921 Ga0496118_0003749 Ga0496118_0003749_9310_10614 421
54 3300048922 Ga0496119_0014244 Ga0496119_0014244_2341_3645 421
55 3300048923 Ga0496120_0004440 Ga0496120_0004440_3431_4735 421
56 3300048925 Ga0496122_0000020 Ga0496122_0000020_355750_357054 421
57 3300048926 Ga0496123_0000003 Ga0496123_0000003_570874_572178 421
58 3300048927 Ga0496124_0009556 Ga0496124_0009556_6348_7652 421
59 3300048928 Ga0496125_0001049 Ga0496125_0001049_4173_5477 421
60 3300048929 Ga0496126_0017728 Ga0496126_0017728_2222_3520 421
61 iso_pu_bacteria 2811994872 2812322408 421
62 3300013250 Ga0171462_1001 Ga0171462_1001315 422
63 3300048903 Ga0496100_0008828 Ga0496100_0008828_1533_2843 422
64 3300048904 Ga0496101_0120451 Ga0496101_0120451_635_1945 422
65 3300048918 Ga0496115_0018992 Ga0496115_0018992_1024_2334 422
66 iso_pu_bacteria 2643221546 2643753054 422
67 iso_pu_bacteria 2808606306 2808631817 422
68 iso_pu_bacteria 2919443155 2919443469 422
69 3300005347 Ga0070668_100021734 Ga0070668_1000217342 423
70 3300005844 Ga0068862_100218465 Ga0068862_1002184652 423
71 3300009036 Ga0105244_10093670 Ga0105244_100936701 423
72 3300014325 Ga0163163_10300017 Ga0163163_103000172 423
73 3300025908 Ga0207643_10053039 Ga0207643_100530392 423
74 3300025961 Ga0207712_10086814 Ga0207712_100868142 423
75 3300025972 Ga0207668_10195308 Ga0207668_101953082 423
76 3300026118 Ga0207675_100134861 Ga0207675_1001348612 423
77 3300028380 Ga0268265_10083947 Ga0268265_100839473 423
78 3300009553 Ga0105249_10079124 Ga0105249_100791242 424
79 iso_pu_bacteria 2643221566 2643849329 424
80 iso_pu_bacteria 2833709550 2833710232 424
81 3300006178 Ga0075367_10003032 Ga0075367_100030322 425
82 3300049586 Ga0501070_0003623 Ga0501070_0003623_8151_9503 425
83 iso_pu_bacteria 2585428157 2588106770 425
84 iso_pu_bacteria 2808606447 2809226799 425
85 iso_pu_bacteria 2852632344 2852633018 425
86 iso_pu_bacteria 2977251589 2977251866 425
87 3300041413 Ga0439465_0020382 Ga0439465_0020382_242_1564 426
88 3300044735 Ga0466968_0020277 Ga0466968_0020277_1121_2470 426
89 3300046460 Ga0495638_0089725 Ga0495638_0089725_209_1549 427
90 3300005548 Ga0070665_100189725 Ga0070665_1001897252 428
91 3300028379 Ga0268266_10165563 Ga0268266_101655632 428
92 3300048922 Ga0496119_0007083 Ga0496119_0007083_6093_7463 428
93 iso_pu_bacteria 2773857763 2774400294 428
94 iso_pu_bacteria 2821268502 2821269322 428
95 iso_pu_bacteria 8045830549 8045832768 428
96 3300006051 Ga0075364_10020052 Ga0075364_100200523 429
97 3300050491 nmdc:mga00v17_45578_c1 nmdc:mga00v17_45578_c1_972_2300 429
98 iso_pu_bacteria 2643221597 2643996482 429
99 3300003578 Ga0006562J51391_1106877 Ga0006562J51391_11068772 431
100 3300003578 Ga0006562J51391_1106878 Ga0006562J51391_11068785 431

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04932

Wzy_C

O-Antigen ligase

235

380

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
7tpj-assembly1.cif.gz_B single-particle cryo-em structure of the waal o-antigen ligase in its apo state 0.578 26 402
7tpj-assembly1.cif.gz_B single-particle cryo-em structure of the waal o-antigen ligase in its apo state 0.5464 26 402
2rld-assembly1.cif.gz_B crystal structure of a protein with unknown function from s23 ribosomal protein family (bt_0352) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a resolution 0.4249 127 220
2rld-assembly1.cif.gz_A crystal structure of a protein with unknown function from s23 ribosomal protein family (bt_0352) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a resolution 0.4071 121 220
8bh1-assembly1.cif.gz_A core divisome complex ftswiqbl from pseudomonas aeruginosa 0.3766 79 409
ID Description Score Start End Superfamily
af_I1JRZ9_200_386_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.3624 1 153 1.20.120.1770
5jr9A00 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.3507 1 220 1.20.58.2140
af_C6T5I9_68_228_1.20.140.40 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Invertase/pectin methylesterase inhibitor family protein 0.3489 83 220 1.20.140.40
af_Q9LSE7_201_388_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.3453 1 133 1.20.120.1770
5jr9A00 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.3351 1 220 1.20.58.2140
ID Description Score Start End GO Terms
AF-A0A074UKA2-F1-model_v4 deleted 0.947 1 246
AF-A0A0F0LW27-F1-model_v4 O-Antigen ligase 0.9258 12 411 GO:0016020
GO:0016874
AF-A0A259SFS1-F1-model_v4 Lipid A core--O-antigen ligase 0.9257 9 421 GO:0016020
GO:0016874
AF-A0A348NS45-F1-model_v4 Lipid A core--O-antigen ligase 0.9252 35 405 GO:0016020
GO:0016874
AF-A0A1I6K5Q6-F1-model_v4 O-antigen ligase 0.9173 11 411 GO:0016020
GO:0016874

Feature Viewer

pLDDT pTM Quality
80.45 0.81 High
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Predicted Structure (AlphaFold2)

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