F000292

General Info

Members Datasets Scaffolds Average Seq Length
100 62 81 379

Family's Representative Sequence

Representative Sequence 3300003320|rootH2_10288509|rootH2_102885092
Length 439
Sequence MQYQNKIARLNIYKQVFFYVLSSIATIKHRCVTHFRVLSIGRQKATRQLHIAGNTSQLIKKISYAFLLLIILSCNSNSKTEEKVTKETHPVNDSIVTFTDVQLKNSGIETGKPSVQNLRATIRANGSVDVPPQSMVSVSFPLGGYLKSTSLLPGSSVHKGEVIGIMEDQSYVQLQQDYLTAKARMEYLANDMQRQKELSDAEATSKKSFQLVLSDYKTQQVLMKSLEEKLMIIGINPAKLSVTNISRDVAVYSPINGYVTKVNVNIGKYVNPADVLFELVNPDDIHAAITVFEKDINQFKKGMHGKVFLADSTGKQYDVEVILVTRNVDDNRSGLVHCHFENPLHELLPGMFLTGIFELDNKPAIAVPEQAIVRYEGKEYVFVTQDGKQFIMTPVKTGIIENGFVELQPSPGKDWLNTTIAVKGAYSLLGSLKNKAVDE

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
3 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
4 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
5 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
6 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
7 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
8 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
9 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
10 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
11 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
12 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
13 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
14 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
15 2984572630 Chryseobacterium sp. SORGH_AS909 Isolate Aerial Root
16 2984606641 Chryseobacterium sp. SORGH_AS1175 Isolate Aerial Root
17 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere
18 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
19 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
20 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
21 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
22 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
23 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
24 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
25 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
26 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
27 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
28 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
29 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
32 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
33 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
40 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
42 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
43 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
46 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
47 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
48 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
49 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
50 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
51 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
52 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
53 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
54 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
55 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
56 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
57 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
58 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
59 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
60 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
61 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81
Metatranscriptomes 0
Isolates 19

Biome Distribution

Category Percentage (%)
Aerial Root 2
Bulb 0
Endosphere 7
Nodule 0
Rhizoplane 0
Rhizosphere 80
Stem 0
Stem Tuber 0
Unclassified 11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2926207 2162886007 Bacteria 3934
2 JGI24739J22299_10006185 3300001989 Bacteria 4521
3 JGI25153J46596_10030262 3300003215 Bacteria 1845
4 JGI25153J46596_10032568 3300003215 Bacteria 1736
5 rootH2_10003742 3300003320 Bacteria 4146
6 rootH2_10100941 3300003320 Bacteria 8438
7 rootH2_10135903 3300003320 Bacteria 2000
8 rootH2_10288509 3300003320 Bacteria 2129
9 rootH1_10000296 3300003323 Bacteria 4966
10 rootH1_10242212 3300003323 Bacteria 3627
11 JGI25160J50197_1001277 3300003354 Bacteria 12777
12 Ga0055526_1024542 3300003771 Unclassified 1968
13 Ga0065714_10064600 3300005288 Bacteria 30244
14 Ga0065714_10076269 3300005288 Bacteria 2811
15 Ga0065704_10070212 3300005289 Bacteria 71637
16 Ga0065704_10073893 3300005289 Bacteria 6696
17 Ga0070677_10015652 3300005333 Bacteria 2688
18 Ga0070680_100133337 3300005336 Unclassified 2079
19 Ga0070673_100131923 3300005364 Bacteria 2097
20 Ga0068867_100065779 3300005459 Bacteria 2699
21 Ga0068857_100022060 3300005577 Bacteria 5602
22 Ga0068856_100117424 3300005614 Bacteria 2661
23 Ga0081540_1025192 3300005983 Bacteria 3430
24 Ga0081539_10106016 3300005985 Bacteria 1423
25 Ga0068871_100120557 3300006358 Bacteria 2215
26 Ga0105237_10004580 3300009545 Bacteria 15963
27 Ga0105239_10003526 3300010375 Bacteria 19158
28 Ga0105239_10339049 3300010375 Bacteria 1696
29 Ga0157373_10027153 3300013100 Bacteria 4131
30 Ga0157372_10055002 3300013307 Bacteria 4443
31 Ga0157380_10155432 3300014326 Bacteria 1982
32 Ga0209564_1003597 3300025295 Bacteria 10323
33 Ga0209758_1005410 3300025297 Bacteria 9855
34 Ga0207426_1026003 3300025302 Archaea 1965
35 Ga0207669_10183964 3300025937 Bacteria 1501
36 Ga0207691_10071184 3300025940 Bacteria 3139
37 Ga0265338_10001062 3300028800 Bacteria 45690
38 Ga0265327_10010693 3300031251 Bacteria 6413
39 Ga0316576_10062601 3300031727 Unclassified 2729
40 Ga0307412_10025296 3300031911 Unclassified 3676
41 Ga0451577_0094622 3300042876 Bacteria 2668
42 Ga0451577_0142908 3300042876 Bacteria 2151
43 Ga0451577_0165526 3300042876 Bacteria 1992
44 Ga0451577_0184065 3300042876 Unclassified 1884
45 Ga0466972_0039917 3300044658 Unclassified 2289
46 Ga0453683_0000445 3300044673 Bacteria 47576
47 Ga0453683_0017422 3300044673 Bacteria 4624
48 Ga0453683_0032222 3300044673 Bacteria 3308
49 Ga0453683_0071691 3300044673 Unclassified 2168
50 Ga0453683_0209389 3300044673 Unclassified 1238
51 Ga0453683_0224348 3300044673 Bacteria 1195
52 Ga0453684_0000202 3300044712 Bacteria 261894
53 Ga0453684_0000284 3300044712 Bacteria 218640
54 Ga0453684_0000703 3300044712 Bacteria 118801
55 Ga0453684_0001073 3300044712 Bacteria 87085
56 Ga0453684_0003092 3300044712 Bacteria 38368
57 Ga0453684_0034099 3300044712 Bacteria 7075
58 Ga0453684_0045702 3300044712 Bacteria 5835
59 Ga0453684_0050145 3300044712 Bacteria 5494
60 Ga0453684_0082688 3300044712 Bacteria 3999
61 Ga0453684_0095033 3300044712 Bacteria 3665
62 Ga0453684_0113927 3300044712 Bacteria 3279
63 Ga0453684_0143127 3300044712 Bacteria 2852
64 Ga0453684_0162219 3300044712 Bacteria 2642
65 Ga0451576_0000221 3300045051 Bacteria 140932
66 Ga0451576_0000275 3300045051 Bacteria 126175
67 Ga0451576_0000569 3300045051 Bacteria 78838
68 Ga0451576_0037957 3300045051 Bacteria 5100
69 Ga0451576_0065686 3300045051 Bacteria 3777
70 Ga0451576_0137017 3300045051 Bacteria 2553
71 Ga0451576_0256485 3300045051 Bacteria 1828
72 Ga0495627_000002 3300046453 Bacteria 903861
73 Ga0495661_0001258 3300046665 Bacteria 21865
74 Ga0495661_0021191 3300046665 Bacteria 4239
75 Ga0495660_0002077 3300046810 Bacteria 12979
76 Ga0495686_0022731 3300047472 Bacteria 4146
77 Ga0496122_0009109 3300048925 Bacteria 10521
78 Ga0496126_0285903 3300048929 Bacteria 1365
79 Ga0501300_003355 3300049523 Bacteria 2390
80 Ga0501034_0077471 3300049571 Bacteria 3330
81 Ga0501044_0143625 3300049823 Bacteria 2374

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_0162219 Ga0453684_0162219_1324_2508 325
2 3300044673 Ga0453683_0209389 Ga0453683_0209389_47_1078 332
3 3300005289 Ga0065704_10073893 Ga0065704_100738933 333
4 3300005577 Ga0068857_100022060 Ga0068857_1000220602 348
5 3300042876 Ga0451577_0094622 Ga0451577_0094622_91_1305 351
6 3300045051 Ga0451576_0037957 Ga0451576_0037957_182_1363 351
7 3300005459 Ga0068867_100065779 Ga0068867_1000657792 354
8 3300003215 JGI25153J46596_10030262 JGI25153J46596_100302622 355
9 3300005333 Ga0070677_10015652 Ga0070677_100156522 355
10 3300014326 Ga0157380_10155432 Ga0157380_101554322 355
11 3300025937 Ga0207669_10183964 Ga0207669_101839642 355
12 3300006358 Ga0068871_100120557 Ga0068871_1001205573 357
13 3300048925 Ga0496122_0009109 Ga0496122_0009109_5243_6397 358
14 3300005614 Ga0068856_100117424 Ga0068856_1001174242 359
15 iso_pu_bacteria 2511231000 2511234247 359
16 iso_pu_bacteria 2582581281 2585159692 359
17 iso_pu_bacteria 2582581282 2585163970 359
18 3300003323 rootH1_10242212 rootH1_102422121 362
19 3300003320 rootH2_10135903 rootH2_101359032 363
20 3300042876 Ga0451577_0142908 Ga0451577_0142908_845_2029 363
21 3300025940 Ga0207691_10071184 Ga0207691_100711842 364
22 3300044673 Ga0453683_0224348 Ga0453683_0224348_45_1175 364
23 3300049823 Ga0501044_0143625 Ga0501044_0143625_285_1385 364
24 3300005985 Ga0081539_10106016 Ga0081539_101060161 366
25 3300031911 Ga0307412_10025296 Ga0307412_100252962 366
26 3300044673 Ga0453683_0032222 Ga0453683_0032222_309_1457 366
27 3300045051 Ga0451576_0065686 Ga0451576_0065686_777_1925 366
28 3300001989 JGI24739J22299_10006185 JGI24739J22299_100061852 367
29 3300003215 JGI25153J46596_10032568 JGI25153J46596_100325682 367
30 3300003771 Ga0055526_1024542 Ga0055526_10245421 367
31 3300025295 Ga0209564_1003597 Ga0209564_10035977 367
32 3300025297 Ga0209758_1005410 Ga0209758_10054107 367
33 3300025302 Ga0207426_1026003 Ga0207426_10260032 367
34 3300042876 Ga0451577_0165526 Ga0451577_0165526_173_1279 367
35 3300048929 Ga0496126_0285903 Ga0496126_0285903_77_1225 367
36 3300044673 Ga0453683_0017422 Ga0453683_0017422_3209_4411 368
37 3300044712 Ga0453684_0003092 Ga0453684_0003092_24838_26028 368
38 3300003323 rootH1_10000296 rootH1_100002962 369
39 3300005288 Ga0065714_10064600 Ga0065714_1006460015 370
40 iso_pu_bacteria 2929154850 2929155811 370
41 3300010375 Ga0105239_10339049 Ga0105239_103390492 371
42 3300046453 Ga0495627_000002 Ga0495627_000002_23102_24247 371
43 3300047472 Ga0495686_0022731 Ga0495686_0022731_1869_3014 371
44 3300049523 Ga0501300_003355 Ga0501300_003355_1012_2136 371
45 iso_pu_bacteria 2929177148 2929182488 371
46 iso_pu_bacteria 2945977869 2945978411 371
47 iso_pu_bacteria 2946013367 2946015727 371
48 iso_pu_bacteria 2993480792 2993483800 372
49 3300044712 Ga0453684_0082688 Ga0453684_0082688_2800_3939 373
50 iso_pu_bacteria 2884791551 2884795246 373
51 3300013100 Ga0157373_10027153 Ga0157373_100271532 374
52 3300044658 Ga0466972_0039917 Ga0466972_0039917_1068_2201 374
53 3300044712 Ga0453684_0113927 Ga0453684_0113927_1285_2469 374
54 3300003320 rootH2_10100941 rootH2_101009412 375
55 3300031251 Ga0265327_10010693 Ga0265327_100106933 375
56 3300049571 Ga0501034_0077471 Ga0501034_0077471_1653_2786 375
57 3300003320 rootH2_10003742 rootH2_100037422 376
58 3300003354 JGI25160J50197_1001277 JGI25160J50197_10012772 376
59 3300005336 Ga0070680_100133337 Ga0070680_1001333372 376
60 3300044712 Ga0453684_0034099 Ga0453684_0034099_4950_6086 376
61 3300045051 Ga0451576_0137017 Ga0451576_0137017_1125_2309 376
62 3300005364 Ga0070673_100131923 Ga0070673_1001319231 377
63 3300005289 Ga0065704_10070212 Ga0065704_100702126 378
64 3300044712 Ga0453684_0045702 Ga0453684_0045702_3336_4508 378
65 iso_pu_bacteria 2984572630 2984575126 378
66 iso_pu_bacteria 2984606641 2984608577 378
67 iso_pu_bacteria 2511231000 2511233751 379
68 iso_pu_bacteria 2582581281 2585158239 379
69 iso_pu_bacteria 2582581282 2585162450 379
70 iso_pu_bacteria 2585428115 2587941979 379
71 iso_pu_bacteria 2904780799 2904784629 379
72 iso_pu_bacteria 2919177583 2919181164 379
73 iso_pu_bacteria 2945924605 2945928004 379
74 3300005983 Ga0081540_1025192 Ga0081540_10251922 380
75 3300044712 Ga0453684_0095033 Ga0453684_0095033_2359_3537 380
76 iso_pu_bacteria 2919437846 2919439969 380
77 3300044673 Ga0453683_0000445 Ga0453683_0000445_19535_20716 381
78 3300044712 Ga0453684_0050145 Ga0453684_0050145_1818_2999 381
79 3300045051 Ga0451576_0256485 Ga0451576_0256485_506_1687 381
80 3300028800 Ga0265338_10001062 Ga0265338_1000106220 382
81 3300031727 Ga0316576_10062601 Ga0316576_100626011 382
82 3300042876 Ga0451577_0184065 Ga0451577_0184065_427_1611 382
83 3300044712 Ga0453684_0000202 Ga0453684_0000202_179568_180752 382
84 3300044712 Ga0453684_0000703 Ga0453684_0000703_40700_41884 382
85 3300044712 Ga0453684_0001073 Ga0453684_0001073_64498_65688 382
86 3300044712 Ga0453684_0143127 Ga0453684_0143127_561_1745 382
87 3300045051 Ga0451576_0000221 Ga0451576_0000221_98905_100089 382
88 3300045051 Ga0451576_0000275 Ga0451576_0000275_43849_45033 382
89 3300045051 Ga0451576_0000569 Ga0451576_0000569_56652_57842 382
90 3300005288 Ga0065714_10076269 Ga0065714_100762693 384
91 3300044673 Ga0453683_0071691 Ga0453683_0071691_666_1853 384
92 3300044712 Ga0453684_0000284 Ga0453684_0000284_202025_203212 384
93 3300046665 Ga0495661_0001258 Ga0495661_0001258_14206_15375 384
94 3300046665 Ga0495661_0021191 Ga0495661_0021191_1826_2995 384
95 3300046810 Ga0495660_0002077 Ga0495660_0002077_5715_6887 384
96 3300003320 rootH2_10288509 rootH2_102885092 387
97 3300009545 Ga0105237_10004580 Ga0105237_100045807 387
98 3300010375 Ga0105239_10003526 Ga0105239_100035266 387
99 3300013307 Ga0157372_10055002 Ga0157372_100550022 387
100 2162886007 SwRhRL2b_contig_2926207 SwRhRL2b_0488.00005930 388

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF16576

HlyD_D23

Barrel-sandwich domain of CusB or HlyD membrane-fusion

117

353

0.92

PF13437

HlyD_3

HlyD family secretion protein

250

350

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5ks8-assembly1.cif.gz_F crystal structure of two-subunit pyruvate carboxylase from methylobacillus flagellatus 0.9363 88 231
2d5d-assembly1.cif.gz_A structure of biotin carboxyl carrier protein (74val start) from pyrococcus horikoshi ot3 ligand free form ii 0.9254 88 229
5gua-assembly1.cif.gz_A structure of biotin carboxyl carrier protein from pyrococcus horikoshi ot3 (delta n79) a138y mutant 0.919 86 229
5ks8-assembly1.cif.gz_C crystal structure of two-subunit pyruvate carboxylase from methylobacillus flagellatus 0.917 88 233
8pn8-assembly1.cif.gz_G engineered glycolyl-coa carboxylase (l100n variant) with bound coa 0.9161 88 229
ID Description Score Start End Superfamily
1vf7L03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9917 124 181 1.10.287.470
1vf7B03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.989 124 181 1.10.287.470
1vf7C03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9881 124 181 1.10.287.470
1vf7M03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9872 124 181 1.10.287.470
1vf7K03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9867 124 181 1.10.287.470
ID Description Score Start End GO Terms
AF-A0A349BPL3-F1-model_v4 Efflux RND transporter periplasmic adaptor subunit 0.8369 201 307
AF-A0A2M6GIP0-F1-model_v4 Efflux transporter periplasmic adaptor subunit 0.8304 226 387 GO:0015679
GO:0030313
GO:0060003
AF-A0A2M6GIP0-F1-model_v4 Efflux transporter periplasmic adaptor subunit 0.8259 226 387 GO:0015679
GO:0030313
GO:0060003
AF-A0A7X7NJ48-F1-model_v4 HlyD family efflux transporter periplasmic adaptor subunit 0.8238 68 311 GO:0030313
AF-A0A519VJS2-F1-model_v4 Efflux RND transporter periplasmic adaptor subunit 0.8103 73 387 GO:0015679
GO:0016020
GO:0022857
GO:0030313
GO:0060003

Feature Viewer

pLDDT pTM Quality
84.51 0.56 Medium
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Predicted Structure (AlphaFold2)

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