|
Taxon Oid |
3300059514
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA |
| Genome Name Sample Name |
Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 106R_AW_T2_R4 (Metagenome Metatranscriptome) |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300059514 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.1.11 |
| Img Submission Id |
289572 |
|
Gold Analysis Project Id
|
Ga0587095
|
| Gold Analysis Project Type |
Metatranscriptome Analysis |
|
Gold Sequencing Project Id
|
Gp0687467
|
|
Gold Study Id
|
Gs0159182
|
| Add Date |
12/07/2022 00:00:00 |
| Assembly Method |
MEGAHIT v. 1.2.9 |
| Comments |
released based on JGI ITS |
| Has Coverage |
True |
| Public Release Date |
12/07/2023 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Erin Nuccio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected]; [email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
Erin Nuccio; Jennifer Pett-Ridge; Peter Weber; Rachel Hestrin; Rhona Stuart; Vanessa Brisson |
| Contact Email |
[email protected] |
| Contact Name |
Erin Nuccio |
| Award Doi |
10.46936/fics.proj.2021.60052/60000400 |
| Funding Program |
CSP-EMSL |
| Funding Year |
2022 |
| Is Published |
False |
| Sequencing Method |
Illumina NovaSeq S4 |
| Sequencing Strategy |
Metatranscriptome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Elevation In Meters |
171.000000 |
| Geographic Location |
USA: Berkeley, CA |
| Habitat |
Rhizosphere soil |
| Isolation |
rhizosphere soil |
| Isolation Country |
8855 |
| Latitude |
37.876 |
| Longitude |
-122.267 |
| Sample Collection Date |
2019/11/19 |
| Host Name |
Panicum hallii |
| Genome Size Assembled |
78671586 |
| Gene Count Assembled |
193147 |