|
Taxon Oid |
3300031810
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Soil, plant litter and rhizosphere microbial communities from European coniferous forests |
| Genome Name Sample Name |
Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA1 (Metagenome Metatranscriptome) (v2) (version 2) |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300031810 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Unclassified |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Soil, plant litter and rhizosphere microbial communities from European coniferous forests |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.16.5 |
| Img Submission Id |
203813 |
|
Gold Analysis Project Id
|
Ga0316044
|
| Gold Analysis Project Type |
Metatranscriptome Analysis |
|
Gold Sequencing Project Id
|
Gp0290745
|
|
Gold Study Id
|
Gs0128948
|
| Add Date |
11/28/2018 00:00:00 |
| Assembly Method |
MEGAHIT v. 1.1.2 |
| Has Coverage |
True |
| Public Release Date |
11/28/2018 00:00:00 |
| Submission Type |
Reanalysis |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected] |
| Alt2 Contact Names |
HÃ¥vard Kauserud; Petr Baldrian |
| Contact Email |
[email protected] |
| Contact Name |
Petr Baldrian |
| Award Doi |
10.46936/fics.proj.2016.49499/60006010 |
| Funding Program |
CSP-EMSL |
| Funding Year |
2017 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA468274 |
| Ncbi Biosample Accession |
SAMN09201835 |
| Sequencing Method |
Illumina HiSeq 2500-1TB |
| Sequencing Strategy |
Metatranscriptome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Unclassified |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Elevation In Meters |
1200.000000 |
| Geographic Location |
Czech Republic: South Bohemian Region |
| Habitat |
roots |
| Isolation |
Spruce fine roots |
| Isolation Country |
8727 |
| Latitude |
49.043 |
| Longitude |
13.6183 |
| Sample Collection Date |
2016/3/22 |
| Host Name |
Picea abies |
| Genome Size Assembled |
52006805 |
| Gene Count Assembled |
86153 |