|
Taxon Oid |
3300023304
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum |
| Genome Name Sample Name |
Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B3.ctno.R1 |
| Sequencing Center |
QB3 Vincent J. Coates Genomics Sequencing Laboratory |
| Img Genome Id |
3300023304 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.16.1 |
| Img Submission Id |
181110 |
|
Gold Analysis Project Id
|
Ga0256714
|
| Gold Analysis Project Type |
Metatranscriptome Analysis |
|
Gold Sequencing Project Id
|
Gp0295822
|
|
Gold Study Id
|
Gs0133540
|
| Add Date |
02/23/2018 00:00:00 |
| Assembly Method |
MEGAHIT v. 1.1.2 |
| Comments |
released by JGI data releasing policy |
| Has Coverage |
False |
| Public Release Date |
03/03/2021 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Heidi Wipf |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected] |
| Alt2 Contact Names |
Edi Wipf; Devin Coleman-Derr |
| Contact Email |
[email protected], [email protected]; [email protected] |
| Contact Name |
Edi Wipf, Edi Wipf; Devin Coleman-Derr |
| Is Published |
False |
| Sequencing Method |
Illumina HiSeq 4000 |
| Sequencing Quality |
Level 6: Finished |
| Sequencing Strategy |
Metatranscriptome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Geographic Location |
Five Points, CA, USA |
| Habitat |
sorghum rhizosphere |
| Isolation |
plant rhizosphere |
| Isolation Country |
8855 |
| Latitude |
36.3391 |
| Longitude |
-120.12 |
| Sample Collection Date |
2017/6 |
| Host Name |
Sorghum bicolor |
| Genome Size Assembled |
16744710 |
| Gene Count Assembled |
32794 |